Gvermi12408.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12408.t1
Unique NameGvermi12408.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length226
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4623247..4623924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX43523
Preferred nameRHEB
PFAMsRas
Max annot lvl2759|Eukaryota
KEGG rclassRC01078
KEGG koko:K07200,ko:K07208,ko:K07843,ko:K07848,ko:K07849,ko:K13238,ko:K17198,ko:K17925
KEGG ReactionR04756
KEGG Pathwayko00071,ko04068,ko04072,ko04140,ko04150,ko04151,ko04152,ko04211,ko04213,ko04218,ko04371,ko04530,ko04710,ko04713,ko04714,ko04910,ko04919,ko04920,ko04921,ko04922,ko04931,ko04932,ko04934,ko05165,ko05231,ko05410,map00071,map04068,map04072,map04140,map04150,map04151,map04152,map04211,map04213,map04218,map04371,map04530,map04710,map04713,map04714,map04910,map04919,map04920,map04921,map04922,map04931,map04932,map04934,map05165,map05231,map05410
GOsGO:0000082,GO:0000166,GO:0000278,GO:0000287,GO:0000323,GO:0001558,GO:0001763,GO:0001882,GO:0001883,GO:0002009,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005975,GO:0006355,GO:0006417,GO:0006629,GO:0006950,GO:0007049,GO:0007050,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007264,GO:0007275,GO:0007399,GO:0007424,GO:0007430,GO:0008104,GO:0008150,GO:0008152,GO:0008286,GO:0008361,GO:0008582,GO:0009605,GO:0009653,GO:0009719,GO:0009725,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010468,GO:0010506,GO:0010507,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0010769,GO:0010770,GO:0010941,GO:0010942,GO:0010975,GO:0010976,GO:0014013,GO:0014015,GO:0016020,GO:0016043,GO:0016241,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019219,GO:0019222,GO:0019899,GO:0019900,GO:0019901,GO:0022008,GO:0022402,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030154,GO:0030307,GO:0030425,GO:0030856,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031344,GO:0031346,GO:0031667,GO:0031929,GO:0032006,GO:0032007,GO:0032008,GO:0032101,GO:0032103,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032535,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0032991,GO:0033036,GO:0034248,GO:0034250,GO:0035239,GO:0035264,GO:0035295,GO:0035556,GO:0035639,GO:0036094,GO:0036477,GO:0040007,GO:0040008,GO:0040012,GO:0040017,GO:0042221,GO:0042592,GO:0042594,GO:0042632,GO:0042995,GO:0043005,GO:0043025,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0044087,GO:0044089,GO:0044093,GO:0044238,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045176,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045685,GO:0045687,GO:0045727,GO:0045786,GO:0045793,GO:0045887,GO:0045927,GO:0046872,GO:0048167,GO:0048168,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048589,GO:0048638,GO:0048639,GO:0048699,GO:0048713,GO:0048714,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0048869,GO:0048878,GO:0050767,GO:0050769,GO:0050770,GO:0050772,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050804,GO:0050807,GO:0050896,GO:0050920,GO:0050921,GO:0051090,GO:0051091,GO:0051092,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051270,GO:0051272,GO:0051716,GO:0051726,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0055088,GO:0055092,GO:0060255,GO:0060284,GO:0060429,GO:0060446,GO:0060541,GO:0060562,GO:0061138,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071704,GO:0071840,GO:0080090,GO:0090066,GO:0090069,GO:0090070,GO:0097159,GO:0097367,GO:0097447,GO:0097458,GO:0098588,GO:0098805,GO:0098852,GO:0099177,GO:0120025,GO:0120035,GO:0120038,GO:1901265,GO:1901363,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902531,GO:1902532,GO:1902533,GO:1902667,GO:1902669,GO:1903047,GO:1903432,GO:1903506,GO:1903939,GO:1903940,GO:1904263,GO:1904396,GO:1904398,GO:1990904,GO:2000026,GO:2000074,GO:2000112,GO:2000377,GO:2001141
Evalue1.36e-36
EggNOG OGsCOG1100@1|root,KOG2101@1|root,KOG0395@2759|Eukaryota,KOG2101@2759|Eukaryota
EC5.3.3.8
Descriptionphosphatidylinositol binding
COG categoryI
BRITEko00000,ko00001,ko01000,ko04031
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12408Gvermi12408Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4623247..4623924 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12408.t1.stop1Gvermi12408.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4623247..4623249 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12408.t1.CDS1Gvermi12408.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4623247..4623924 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12408.t1.exon1Gvermi12408.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4623247..4623924 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12408.t1.start1Gvermi12408.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4623922..4623924 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12408.t1Gvermi12408.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4623247..4623924 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12408.t1 ID=Gvermi12408.t1|Name=Gvermi12408.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=226bp
MAQVDRPSSEPPSPPHSPFCLRKRIAVLGARGVGKSAVVIQCIYGRFEPE
YMPTCEDSFLWTTTVDGNRYEVTIVDADGQDEFPHFGQQYTIGIDGYILM
FSVLHEGTFQIVKRVNEKLLDTLLVLNRKGTAELPRILVGNQIDDLQHRR
VSREDAQHFADENGIPYYETSALTSENVQDVFTRLLRIIYANQFGFSDSP
SKFPPQKSQPRLSRADHNSNACNVQ*
back to top

spliced messenger RNA

>Gvermi12408.t1 ID=Gvermi12408.t1|Name=Gvermi12408.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=678bp|location=Sequence derived from alignment at ScGOVlb_3404:4623247..4623924- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCAGGTTGACCGGCCCAGTAGCGAGCCCCCGTCGCCGCCGCACAG
CCCATTCTGCCTCCGCAAGCGAATTGCTGTTCTCGGTGCGCGCGGTGTTG
GCAAAAGCGCCGTAGTGATACAATGCATCTACGGCAGGTTCGAGCCCGAG
TACATGCCCACCTGTGAGGATTCATTCCTCTGGACTACCACCGTCGACGG
CAACCGATACGAGGTCACCATCGTCGACGCAGATGGTCAGGATGAGTTTC
CACATTTTGGCCAACAATACACCATTGGCATAGATGGTTATATCCTAATG
TTCTCTGTTCTCCACGAGGGTACCTTCCAAATTGTAAAGCGAGTCAACGA
GAAGCTTCTGGACACCCTTCTGGTGCTCAATCGAAAGGGCACAGCTGAAT
TGCCCCGAATCTTGGTCGGTAATCAAATCGATGACCTTCAGCATCGCCGT
GTATCCCGAGAAGATGCACAACATTTTGCTGACGAGAATGGCATCCCGTA
CTATGAAACCTCCGCTCTGACAAGTGAAAATGTGCAAGATGTCTTTACCC
GTCTTTTGAGAATCATATATGCCAATCAATTTGGATTTTCCGATTCCCCC
TCCAAATTCCCACCACAAAAATCACAGCCACGTCTCTCACGGGCTGATCA
CAACTCCAATGCGTGCAATGTGCAATAG
back to top

protein sequence of Gvermi12408.t1

>Gvermi12408.t1 ID=Gvermi12408.t1|Name=Gvermi12408.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=226bp
MAQVDRPSSEPPSPPHSPFCLRKRIAVLGARGVGKSAVVIQCIYGRFEPE
YMPTCEDSFLWTTTVDGNRYEVTIVDADGQDEFPHFGQQYTIGIDGYILM
FSVLHEGTFQIVKRVNEKLLDTLLVLNRKGTAELPRILVGNQIDDLQHRR
VSREDAQHFADENGIPYYETSALTSENVQDVFTRLLRIIYANQFGFSDSP
SKFPPQKSQPRLSRADHNSNACNVQ*
back to top

mRNA from alignment at ScGOVlb_3404:4623247..4623924-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12408.t1 ID=Gvermi12408.t1|Name=Gvermi12408.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=678bp|location=Sequence derived from alignment at ScGOVlb_3404:4623247..4623924- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCAGGTTGACCGGCCCAGTAGCGAGCCCCCGTCGCCGCCGCACAG
CCCATTCTGCCTCCGCAAGCGAATTGCTGTTCTCGGTGCGCGCGGTGTTG
GCAAAAGCGCCGTAGTGATACAATGCATCTACGGCAGGTTCGAGCCCGAG
TACATGCCCACCTGTGAGGATTCATTCCTCTGGACTACCACCGTCGACGG
CAACCGATACGAGGTCACCATCGTCGACGCAGATGGTCAGGATGAGTTTC
CACATTTTGGCCAACAATACACCATTGGCATAGATGGTTATATCCTAATG
TTCTCTGTTCTCCACGAGGGTACCTTCCAAATTGTAAAGCGAGTCAACGA
GAAGCTTCTGGACACCCTTCTGGTGCTCAATCGAAAGGGCACAGCTGAAT
TGCCCCGAATCTTGGTCGGTAATCAAATCGATGACCTTCAGCATCGCCGT
GTATCCCGAGAAGATGCACAACATTTTGCTGACGAGAATGGCATCCCGTA
CTATGAAACCTCCGCTCTGACAAGTGAAAATGTGCAAGATGTCTTTACCC
GTCTTTTGAGAATCATATATGCCAATCAATTTGGATTTTCCGATTCCCCC
TCCAAATTCCCACCACAAAAATCACAGCCACGTCTCTCACGGGCTGATCA
CAACTCCAATGCGTGCAATGTGCAATAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:4623247..4623924-

>Gvermi12408.t1 ID=Gvermi12408.t1|Name=Gvermi12408.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=678bp|location=Sequence derived from alignment at ScGOVlb_3404:4623247..4623924- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCAGGTTGACCGGCCCAGTAGCGAGCCCCCGTCGCCGCCGCACAG
CCCATTCTGCCTCCGCAAGCGAATTGCTGTTCTCGGTGCGCGCGGTGTTG
GCAAAAGCGCCGTAGTGATACAATGCATCTACGGCAGGTTCGAGCCCGAG
TACATGCCCACCTGTGAGGATTCATTCCTCTGGACTACCACCGTCGACGG
CAACCGATACGAGGTCACCATCGTCGACGCAGATGGTCAGGATGAGTTTC
CACATTTTGGCCAACAATACACCATTGGCATAGATGGTTATATCCTAATG
TTCTCTGTTCTCCACGAGGGTACCTTCCAAATTGTAAAGCGAGTCAACGA
GAAGCTTCTGGACACCCTTCTGGTGCTCAATCGAAAGGGCACAGCTGAAT
TGCCCCGAATCTTGGTCGGTAATCAAATCGATGACCTTCAGCATCGCCGT
GTATCCCGAGAAGATGCACAACATTTTGCTGACGAGAATGGCATCCCGTA
CTATGAAACCTCCGCTCTGACAAGTGAAAATGTGCAAGATGTCTTTACCC
GTCTTTTGAGAATCATATATGCCAATCAATTTGGATTTTCCGATTCCCCC
TCCAAATTCCCACCACAAAAATCACAGCCACGTCTCTCACGGGCTGATCA
CAACTCCAATGCGTGCAATGTGCAATAG
back to top