Gvermi12176.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12176.t1
Unique Name	Gvermi12176.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	399

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:3678436..3679632 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5334.XP_003031473.1
Preferred name	NUP57
PFAMs	Nucleoporin_FG,Nup54
Max annot lvl	4751\|Fungi
KEGG ko	ko:K14308
KEGG TC	1.I.1
KEGG Pathway	ko03013,map03013
KEGG Module	M00427
GOs	GO:0003674,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0006606,GO:0006607,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0006999,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0017056,GO:0031224,GO:0031967,GO:0031975,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0036228,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044446,GO:0044464,GO:0044613,GO:0045184,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072657,GO:0090435
Evalue	1.58e-23
EggNOG OGs	KOG0845@1\|root,KOG3091@1\|root,KOG0845@2759\|Eukaryota,KOG3091@2759\|Eukaryota,38C34@33154\|Opisthokonta,3NVWB@4751\|Fungi,3VC7T@5204\|Basidiomycota,224BZ@155619\|Agaricomycetes,3W6DR@5338\|Agaricales
Description	Nucleoporin complex subunit 54
COG category	UY
BRITE	ko00000,ko00001,ko00002,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12176	Gvermi12176	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 3678436..3679632 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12176.t1.start1	Gvermi12176.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 3678436..3678438 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12176.t1.CDS1	Gvermi12176.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 3678436..3679632 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12176.t1.exon1	Gvermi12176.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 3678436..3679632 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12176.t1.stop1	Gvermi12176.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 3679630..3679632 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12176.t1	Gvermi12176.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 3678436..3679632 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:3678436..3679632+
coding sequence from alignment at ScGOVlb_3404:3678436..3679632+

mRNA sequence

>Gvermi12176.t1 ID=Gvermi12176.t1|Name=Gvermi12176.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=399bp
MAFNFGGSSQSQSSFGFGAAGSSQGAGSFGFGGSQPQSQSLFGSTPQSQS
LFGSTPQSQSLFGQPQSQSLFGQPQSQSLFGQAQSQSLFGQSSQSLFGQS
SQSIFGQSQSLFGQPQSSTSLFGGQSQSIWGQSSTAYGGSSIFGAQPQMA
QHQQQQPLRLPRSLTDVIEKLNPLHPESKFHSALYNRVSPSDISRYKRPS
NMDERLWDEAVEKNPDPSRLVPVQANLFDDLIERSNMQTKRIDEHLVVLS
KIKHIITKIDGEVDTDISTKLSAYRRRHRELARKLLKIASVVELEASNID
SSGALTPVETVRKKRLDTIARALAAPAEFKDKLSDLVEIAETTILNRQAQ
PAIEIRDPKAANTIKQLLSDQLQGIQHLSHVCDRADRDISIMATALER*

spliced messenger RNA

>Gvermi12176.t1 ID=Gvermi12176.t1|Name=Gvermi12176.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1197bp|location=Sequence derived from alignment at ScGOVlb_3404:3678436..3679632+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCAACTTTGGGGGCTCGAGCCAAAGCCAGTCGTCTTTCGGCTT
TGGAGCTGCGGGATCAAGCCAAGGAGCTGGTTCATTTGGATTTGGGGGCT
CCCAACCGCAGTCACAATCTCTTTTCGGTTCCACTCCGCAGTCACAATCT
CTTTTCGGTTCCACTCCGCAGTCCCAATCGCTTTTCGGGCAACCTCAGTC
TCAATCCTTGTTTGGACAACCGCAAAGCCAATCCCTCTTTGGGCAAGCAC
AATCACAGTCTCTTTTCGGACAATCAAGCCAGTCACTATTTGGACAGTCA
AGTCAGTCGATTTTTGGACAATCGCAGTCTCTTTTCGGCCAACCTCAATC
GAGCACAAGTTTGTTTGGTGGACAAAGCCAGTCTATATGGGGCCAGTCAT
CGACTGCATACGGCGGATCTTCAATTTTCGGCGCACAACCGCAAATGGCT
CAGCACCAACAGCAGCAACCTTTGCGTCTCCCCCGTTCGTTGACCGATGT
GATCGAAAAGCTTAACCCGTTGCATCCAGAATCTAAATTTCATTCCGCTT
TATATAACCGAGTATCACCAAGCGATATTTCGAGGTACAAGCGACCTTCG
AACATGGATGAAAGGCTCTGGGATGAAGCTGTGGAAAAAAACCCAGATCC
ATCGCGTCTTGTTCCTGTTCAAGCAAACCTTTTTGACGATCTTATCGAAC
GATCAAACATGCAAACAAAGCGAATTGATGAACATCTGGTTGTTCTATCT
AAAATAAAGCATATCATCACGAAGATCGACGGAGAAGTGGACACAGATAT
TTCCACAAAACTTTCGGCATATCGGCGAAGACATCGTGAACTTGCGCGCA
AATTGCTGAAGATTGCCTCTGTTGTTGAACTGGAAGCATCGAATATTGAT
TCTAGTGGAGCCCTAACCCCCGTTGAAACCGTGCGAAAAAAGAGATTGGA
CACAATCGCACGAGCTTTAGCAGCTCCAGCTGAATTCAAGGACAAGCTCA
GTGACCTTGTCGAAATCGCAGAAACCACCATTCTGAATCGACAAGCACAG
CCAGCAATTGAGATTCGTGACCCCAAGGCTGCAAACACCATCAAGCAGCT
TCTGAGCGATCAACTTCAGGGAATTCAACACCTTAGTCACGTTTGCGACC
GTGCTGATCGCGACATTTCCATCATGGCTACTGCGCTAGAGCGATGA

protein sequence of Gvermi12176.t1

>Gvermi12176.t1 ID=Gvermi12176.t1|Name=Gvermi12176.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=399bp
MAFNFGGSSQSQSSFGFGAAGSSQGAGSFGFGGSQPQSQSLFGSTPQSQS
LFGSTPQSQSLFGQPQSQSLFGQPQSQSLFGQAQSQSLFGQSSQSLFGQS
SQSIFGQSQSLFGQPQSSTSLFGGQSQSIWGQSSTAYGGSSIFGAQPQMA
QHQQQQPLRLPRSLTDVIEKLNPLHPESKFHSALYNRVSPSDISRYKRPS
NMDERLWDEAVEKNPDPSRLVPVQANLFDDLIERSNMQTKRIDEHLVVLS
KIKHIITKIDGEVDTDISTKLSAYRRRHRELARKLLKIASVVELEASNID
SSGALTPVETVRKKRLDTIARALAAPAEFKDKLSDLVEIAETTILNRQAQ
PAIEIRDPKAANTIKQLLSDQLQGIQHLSHVCDRADRDISIMATALER*

mRNA from alignment at ScGOVlb_3404:3678436..3679632+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12176.t1 ID=Gvermi12176.t1|Name=Gvermi12176.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1197bp|location=Sequence derived from alignment at ScGOVlb_3404:3678436..3679632+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTTCAACTTTGGGGGCTCGAGCCAAAGCCAGTCGTCTTTCGGCTT
TGGAGCTGCGGGATCAAGCCAAGGAGCTGGTTCATTTGGATTTGGGGGCT
CCCAACCGCAGTCACAATCTCTTTTCGGTTCCACTCCGCAGTCACAATCT
CTTTTCGGTTCCACTCCGCAGTCCCAATCGCTTTTCGGGCAACCTCAGTC
TCAATCCTTGTTTGGACAACCGCAAAGCCAATCCCTCTTTGGGCAAGCAC
AATCACAGTCTCTTTTCGGACAATCAAGCCAGTCACTATTTGGACAGTCA
AGTCAGTCGATTTTTGGACAATCGCAGTCTCTTTTCGGCCAACCTCAATC
GAGCACAAGTTTGTTTGGTGGACAAAGCCAGTCTATATGGGGCCAGTCAT
CGACTGCATACGGCGGATCTTCAATTTTCGGCGCACAACCGCAAATGGCT
CAGCACCAACAGCAGCAACCTTTGCGTCTCCCCCGTTCGTTGACCGATGT
GATCGAAAAGCTTAACCCGTTGCATCCAGAATCTAAATTTCATTCCGCTT
TATATAACCGAGTATCACCAAGCGATATTTCGAGGTACAAGCGACCTTCG
AACATGGATGAAAGGCTCTGGGATGAAGCTGTGGAAAAAAACCCAGATCC
ATCGCGTCTTGTTCCTGTTCAAGCAAACCTTTTTGACGATCTTATCGAAC
GATCAAACATGCAAACAAAGCGAATTGATGAACATCTGGTTGTTCTATCT
AAAATAAAGCATATCATCACGAAGATCGACGGAGAAGTGGACACAGATAT
TTCCACAAAACTTTCGGCATATCGGCGAAGACATCGTGAACTTGCGCGCA
AATTGCTGAAGATTGCCTCTGTTGTTGAACTGGAAGCATCGAATATTGAT
TCTAGTGGAGCCCTAACCCCCGTTGAAACCGTGCGAAAAAAGAGATTGGA
CACAATCGCACGAGCTTTAGCAGCTCCAGCTGAATTCAAGGACAAGCTCA
GTGACCTTGTCGAAATCGCAGAAACCACCATTCTGAATCGACAAGCACAG
CCAGCAATTGAGATTCGTGACCCCAAGGCTGCAAACACCATCAAGCAGCT
TCTGAGCGATCAACTTCAGGGAATTCAACACCTTAGTCACGTTTGCGACC
GTGCTGATCGCGACATTTCCATCATGGCTACTGCGCTAGAGCGATGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:3678436..3679632+

>Gvermi12176.t1 ID=Gvermi12176.t1|Name=Gvermi12176.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1197bp|location=Sequence derived from alignment at ScGOVlb_3404:3678436..3679632+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTTCAACTTTGGGGGCTCGAGCCAAAGCCAGTCGTCTTTCGGCTT
TGGAGCTGCGGGATCAAGCCAAGGAGCTGGTTCATTTGGATTTGGGGGCT
CCCAACCGCAGTCACAATCTCTTTTCGGTTCCACTCCGCAGTCACAATCT
CTTTTCGGTTCCACTCCGCAGTCCCAATCGCTTTTCGGGCAACCTCAGTC
TCAATCCTTGTTTGGACAACCGCAAAGCCAATCCCTCTTTGGGCAAGCAC
AATCACAGTCTCTTTTCGGACAATCAAGCCAGTCACTATTTGGACAGTCA
AGTCAGTCGATTTTTGGACAATCGCAGTCTCTTTTCGGCCAACCTCAATC
GAGCACAAGTTTGTTTGGTGGACAAAGCCAGTCTATATGGGGCCAGTCAT
CGACTGCATACGGCGGATCTTCAATTTTCGGCGCACAACCGCAAATGGCT
CAGCACCAACAGCAGCAACCTTTGCGTCTCCCCCGTTCGTTGACCGATGT
GATCGAAAAGCTTAACCCGTTGCATCCAGAATCTAAATTTCATTCCGCTT
TATATAACCGAGTATCACCAAGCGATATTTCGAGGTACAAGCGACCTTCG
AACATGGATGAAAGGCTCTGGGATGAAGCTGTGGAAAAAAACCCAGATCC
ATCGCGTCTTGTTCCTGTTCAAGCAAACCTTTTTGACGATCTTATCGAAC
GATCAAACATGCAAACAAAGCGAATTGATGAACATCTGGTTGTTCTATCT
AAAATAAAGCATATCATCACGAAGATCGACGGAGAAGTGGACACAGATAT
TTCCACAAAACTTTCGGCATATCGGCGAAGACATCGTGAACTTGCGCGCA
AATTGCTGAAGATTGCCTCTGTTGTTGAACTGGAAGCATCGAATATTGAT
TCTAGTGGAGCCCTAACCCCCGTTGAAACCGTGCGAAAAAAGAGATTGGA
CACAATCGCACGAGCTTTAGCAGCTCCAGCTGAATTCAAGGACAAGCTCA
GTGACCTTGTCGAAATCGCAGAAACCACCATTCTGAATCGACAAGCACAG
CCAGCAATTGAGATTCGTGACCCCAAGGCTGCAAACACCATCAAGCAGCT
TCTGAGCGATCAACTTCAGGGAATTCAACACCTTAGTCACGTTTGCGACC
GTGCTGATCGCGACATTTCCATCATGGCTACTGCGCTAGAGCGATGA