Gvermi12451.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12451.t1
Unique NameGvermi12451.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length429
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4853473..4854759 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704275.1
Preferred nameRPT5
PFAMsAAA
Max annot lvl2759|Eukaryota
KEGG koko:K03065
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
GOsGO:0000166,GO:0000502,GO:0001678,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005838,GO:0005886,GO:0006355,GO:0006357,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0007088,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008540,GO:0009056,GO:0009057,GO:0009553,GO:0009555,GO:0009743,GO:0009746,GO:0009749,GO:0009756,GO:0009757,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010182,GO:0010243,GO:0010255,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010965,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017025,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0019725,GO:0019941,GO:0022607,GO:0022624,GO:0023052,GO:0030071,GO:0030162,GO:0030163,GO:0030433,GO:0030554,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031595,GO:0031597,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033500,GO:0033554,GO:0034284,GO:0034622,GO:0034976,GO:0035639,GO:0036094,GO:0036402,GO:0036503,GO:0042176,GO:0042221,GO:0042592,GO:0042593,GO:0042623,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043248,GO:0043254,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045893,GO:0045898,GO:0045899,GO:0045931,GO:0045935,GO:0045944,GO:0048229,GO:0048518,GO:0048522,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051603,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0055082,GO:0060255,GO:0060260,GO:0060261,GO:0061136,GO:0062033,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070682,GO:0070887,GO:0071310,GO:0071322,GO:0071326,GO:0071331,GO:0071333,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090068,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901700,GO:1901701,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1902680,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1903508,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2000112,GO:2000142,GO:2000144,GO:2001141,GO:2001252
Evalue9.7e-227
EggNOG OGsCOG1222@1|root,KOG0652@2759|Eukaryota
DescriptionBelongs to the AAA ATPase family
COG categoryO
BRITEko00000,ko00001,ko00002,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12451Gvermi12451Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4853473..4854759 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12451.t1.stop1Gvermi12451.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4853473..4853475 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12451.t1.CDS1Gvermi12451.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4853473..4854759 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12451.t1.exon1Gvermi12451.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4853473..4854759 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12451.t1.start1Gvermi12451.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4854757..4854759 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12451.t1Gvermi12451.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4853473..4854759 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12451.t1 ID=Gvermi12451.t1|Name=Gvermi12451.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=429bp
MAAAALGDIAGELMQDESLDQEILRAPVDELLTRVRLLEAEVKVLRSESQ
RLNHEKKHTIEKIRLNTDKVKLNKQLPYLVGNIVEILDIEEEDEEDGANV
DLDSQRKGKAVVLKTSTRQTIFLPVIGLVPAEELKPADLVGVNKDSYLIL
EKLPAEYDSRVKAMEVDEKPTESYADVGGLDKQIQELVEAVVLPLTQKER
FDAVGIRPPKGVLMYGPPGVGKTLLARACAAQTNATFLKLAGPQLVQMFI
GDGAKLVRDAFALAKEKGPTIIFIDELDAIGTKRFDSELSGDREVQRTML
ELLNQLDGFSSDDNIKVIAATNRVDILDPALLRSGRIDRKIEFVLPDESA
RTIILQIHSRKMNVNKDVNFREIAAQCQQFNSAQLKAVTVEAGMLALRND
RGEIVHEDFVEGVMAVQAKKKGSLHYYS*
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spliced messenger RNA

>Gvermi12451.t1 ID=Gvermi12451.t1|Name=Gvermi12451.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1287bp|location=Sequence derived from alignment at ScGOVlb_3404:4853473..4854759- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCAGCCGCGCTGGGAGATATTGCCGGCGAGCTCATGCAGGATGA
GAGTCTCGACCAAGAAATCCTCCGCGCGCCTGTCGACGAGTTGTTAACAC
GCGTACGATTGCTGGAAGCGGAGGTTAAGGTGCTTCGCAGCGAGAGCCAG
CGCCTCAATCATGAAAAGAAGCACACCATCGAAAAGATCCGTCTCAACAC
TGACAAAGTCAAGCTAAACAAGCAGTTACCATATCTTGTGGGTAACATCG
TCGAGATTTTGGATATTGAGGAGGAAGATGAAGAGGACGGTGCCAATGTC
GATCTGGACTCTCAGAGAAAGGGAAAGGCTGTTGTTTTGAAGACGTCCAC
AAGACAAACCATTTTTCTGCCCGTCATTGGACTTGTTCCAGCAGAAGAGC
TCAAGCCGGCCGACCTAGTCGGTGTCAACAAAGACTCGTACCTTATTCTT
GAAAAGCTACCAGCCGAGTACGACTCACGAGTGAAGGCTATGGAGGTCGA
CGAGAAACCCACCGAATCGTATGCCGACGTTGGTGGACTTGACAAACAGA
TTCAAGAGCTTGTTGAAGCCGTCGTACTACCATTGACACAGAAGGAGCGA
TTTGATGCGGTTGGCATTCGTCCGCCAAAGGGTGTGCTCATGTACGGTCC
GCCTGGAGTAGGAAAGACACTCTTGGCACGTGCATGTGCCGCGCAGACCA
ATGCTACATTCCTGAAACTTGCAGGTCCGCAACTCGTGCAAATGTTCATT
GGTGATGGTGCAAAACTAGTGCGTGATGCCTTTGCGTTGGCAAAGGAAAA
AGGTCCTACCATTATCTTTATTGATGAATTGGATGCTATTGGTACCAAGA
GATTTGATTCGGAGTTGAGCGGTGATCGAGAGGTACAGCGCACAATGCTT
GAGCTGCTAAATCAGCTAGACGGGTTTTCTTCAGACGACAATATCAAAGT
GATCGCGGCAACGAATCGAGTCGATATTCTGGACCCTGCCTTACTGAGAT
CCGGTCGAATTGATAGGAAGATCGAGTTCGTGCTGCCGGATGAGAGTGCG
AGAACGATAATTTTGCAGATTCATTCAAGAAAGATGAATGTTAACAAGGA
TGTCAACTTCAGAGAGATTGCTGCTCAGTGCCAACAATTTAATTCGGCGC
AATTGAAGGCGGTCACGGTTGAGGCGGGAATGTTGGCTCTGCGAAACGAT
CGGGGCGAGATTGTGCATGAGGATTTTGTGGAGGGCGTGATGGCAGTTCA
AGCGAAGAAGAAGGGCTCTTTGCATTATTACTCGTAA
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protein sequence of Gvermi12451.t1

>Gvermi12451.t1 ID=Gvermi12451.t1|Name=Gvermi12451.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=429bp
MAAAALGDIAGELMQDESLDQEILRAPVDELLTRVRLLEAEVKVLRSESQ
RLNHEKKHTIEKIRLNTDKVKLNKQLPYLVGNIVEILDIEEEDEEDGANV
DLDSQRKGKAVVLKTSTRQTIFLPVIGLVPAEELKPADLVGVNKDSYLIL
EKLPAEYDSRVKAMEVDEKPTESYADVGGLDKQIQELVEAVVLPLTQKER
FDAVGIRPPKGVLMYGPPGVGKTLLARACAAQTNATFLKLAGPQLVQMFI
GDGAKLVRDAFALAKEKGPTIIFIDELDAIGTKRFDSELSGDREVQRTML
ELLNQLDGFSSDDNIKVIAATNRVDILDPALLRSGRIDRKIEFVLPDESA
RTIILQIHSRKMNVNKDVNFREIAAQCQQFNSAQLKAVTVEAGMLALRND
RGEIVHEDFVEGVMAVQAKKKGSLHYYS*
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mRNA from alignment at ScGOVlb_3404:4853473..4854759-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12451.t1 ID=Gvermi12451.t1|Name=Gvermi12451.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1287bp|location=Sequence derived from alignment at ScGOVlb_3404:4853473..4854759- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGCAGCCGCGCTGGGAGATATTGCCGGCGAGCTCATGCAGGATGA
GAGTCTCGACCAAGAAATCCTCCGCGCGCCTGTCGACGAGTTGTTAACAC
GCGTACGATTGCTGGAAGCGGAGGTTAAGGTGCTTCGCAGCGAGAGCCAG
CGCCTCAATCATGAAAAGAAGCACACCATCGAAAAGATCCGTCTCAACAC
TGACAAAGTCAAGCTAAACAAGCAGTTACCATATCTTGTGGGTAACATCG
TCGAGATTTTGGATATTGAGGAGGAAGATGAAGAGGACGGTGCCAATGTC
GATCTGGACTCTCAGAGAAAGGGAAAGGCTGTTGTTTTGAAGACGTCCAC
AAGACAAACCATTTTTCTGCCCGTCATTGGACTTGTTCCAGCAGAAGAGC
TCAAGCCGGCCGACCTAGTCGGTGTCAACAAAGACTCGTACCTTATTCTT
GAAAAGCTACCAGCCGAGTACGACTCACGAGTGAAGGCTATGGAGGTCGA
CGAGAAACCCACCGAATCGTATGCCGACGTTGGTGGACTTGACAAACAGA
TTCAAGAGCTTGTTGAAGCCGTCGTACTACCATTGACACAGAAGGAGCGA
TTTGATGCGGTTGGCATTCGTCCGCCAAAGGGTGTGCTCATGTACGGTCC
GCCTGGAGTAGGAAAGACACTCTTGGCACGTGCATGTGCCGCGCAGACCA
ATGCTACATTCCTGAAACTTGCAGGTCCGCAACTCGTGCAAATGTTCATT
GGTGATGGTGCAAAACTAGTGCGTGATGCCTTTGCGTTGGCAAAGGAAAA
AGGTCCTACCATTATCTTTATTGATGAATTGGATGCTATTGGTACCAAGA
GATTTGATTCGGAGTTGAGCGGTGATCGAGAGGTACAGCGCACAATGCTT
GAGCTGCTAAATCAGCTAGACGGGTTTTCTTCAGACGACAATATCAAAGT
GATCGCGGCAACGAATCGAGTCGATATTCTGGACCCTGCCTTACTGAGAT
CCGGTCGAATTGATAGGAAGATCGAGTTCGTGCTGCCGGATGAGAGTGCG
AGAACGATAATTTTGCAGATTCATTCAAGAAAGATGAATGTTAACAAGGA
TGTCAACTTCAGAGAGATTGCTGCTCAGTGCCAACAATTTAATTCGGCGC
AATTGAAGGCGGTCACGGTTGAGGCGGGAATGTTGGCTCTGCGAAACGAT
CGGGGCGAGATTGTGCATGAGGATTTTGTGGAGGGCGTGATGGCAGTTCA
AGCGAAGAAGAAGGGCTCTTTGCATTATTACTCGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4853473..4854759-

>Gvermi12451.t1 ID=Gvermi12451.t1|Name=Gvermi12451.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1287bp|location=Sequence derived from alignment at ScGOVlb_3404:4853473..4854759- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGCAGCCGCGCTGGGAGATATTGCCGGCGAGCTCATGCAGGATGA
GAGTCTCGACCAAGAAATCCTCCGCGCGCCTGTCGACGAGTTGTTAACAC
GCGTACGATTGCTGGAAGCGGAGGTTAAGGTGCTTCGCAGCGAGAGCCAG
CGCCTCAATCATGAAAAGAAGCACACCATCGAAAAGATCCGTCTCAACAC
TGACAAAGTCAAGCTAAACAAGCAGTTACCATATCTTGTGGGTAACATCG
TCGAGATTTTGGATATTGAGGAGGAAGATGAAGAGGACGGTGCCAATGTC
GATCTGGACTCTCAGAGAAAGGGAAAGGCTGTTGTTTTGAAGACGTCCAC
AAGACAAACCATTTTTCTGCCCGTCATTGGACTTGTTCCAGCAGAAGAGC
TCAAGCCGGCCGACCTAGTCGGTGTCAACAAAGACTCGTACCTTATTCTT
GAAAAGCTACCAGCCGAGTACGACTCACGAGTGAAGGCTATGGAGGTCGA
CGAGAAACCCACCGAATCGTATGCCGACGTTGGTGGACTTGACAAACAGA
TTCAAGAGCTTGTTGAAGCCGTCGTACTACCATTGACACAGAAGGAGCGA
TTTGATGCGGTTGGCATTCGTCCGCCAAAGGGTGTGCTCATGTACGGTCC
GCCTGGAGTAGGAAAGACACTCTTGGCACGTGCATGTGCCGCGCAGACCA
ATGCTACATTCCTGAAACTTGCAGGTCCGCAACTCGTGCAAATGTTCATT
GGTGATGGTGCAAAACTAGTGCGTGATGCCTTTGCGTTGGCAAAGGAAAA
AGGTCCTACCATTATCTTTATTGATGAATTGGATGCTATTGGTACCAAGA
GATTTGATTCGGAGTTGAGCGGTGATCGAGAGGTACAGCGCACAATGCTT
GAGCTGCTAAATCAGCTAGACGGGTTTTCTTCAGACGACAATATCAAAGT
GATCGCGGCAACGAATCGAGTCGATATTCTGGACCCTGCCTTACTGAGAT
CCGGTCGAATTGATAGGAAGATCGAGTTCGTGCTGCCGGATGAGAGTGCG
AGAACGATAATTTTGCAGATTCATTCAAGAAAGATGAATGTTAACAAGGA
TGTCAACTTCAGAGAGATTGCTGCTCAGTGCCAACAATTTAATTCGGCGC
AATTGAAGGCGGTCACGGTTGAGGCGGGAATGTTGGCTCTGCGAAACGAT
CGGGGCGAGATTGTGCATGAGGATTTTGTGGAGGGCGTGATGGCAGTTCA
AGCGAAGAAGAAGGGCTCTTTGCATTATTACTCGTAA
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