Gvermi12146.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12146.t1
Unique NameGvermi12146.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length364
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3561356..3562447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4577.GRMZM5G863645_P01
PFAMsHydrolase_4
Max annot lvl35493|Streptophyta
KEGG rclassRC00020,RC00041
KEGG koko:K01054
KEGG ReactionR01351
KEGG Pathwayko00561,ko01100,ko04714,ko04723,ko04923,map00561,map01100,map04714,map04723,map04923
KEGG ModuleM00098
Evalue3.92e-45
EggNOG OGsCOG2267@1|root,KOG1455@2759|Eukaryota,37JG9@33090|Viridiplantae,3GEJG@35493|Streptophyta,3M22P@4447|Liliopsida,3I85V@38820|Poales
EC3.1.1.23
DescriptionSerine aminopeptidase, S33
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12146Gvermi12146Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3561356..3562447 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12146.t1.stop1Gvermi12146.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3561356..3561358 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12146.t1.CDS1Gvermi12146.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3561356..3562447 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12146.t1.exon1Gvermi12146.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3561356..3562447 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12146.t1.start1Gvermi12146.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3562445..3562447 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12146.t1Gvermi12146.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3561356..3562447 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12146.t1 ID=Gvermi12146.t1|Name=Gvermi12146.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=364bp
MEAALSWLFPSGHRLPSGRAPSFTQPLFPPPHATRPSPPPGVLACPLPQP
RLHARHATVGWRVDEWADHSAYYVLNSRGQRIFVQTWRPRHRTRSFWHRL
FPRRRAERGIIYIIHGLNDHSNKYTRVARAWVDAGYVVIAHDFHGHGRSD
GYRAYTSSMQHYVDDAQHTIQHAKQRLPRRLSTLPSFILAHSLGGAVAIH
LARDAPCGTFRGVMLTAPAVRVYPKPILKLFAPLLGTLAPLLPVQRLKFD
RKRRRAKSNEHDAYDSRDDPLVVRSPVRARVGYEVLKSCEKIMSEAERFR
VPVFVAHSRKDRVTNAKGTIDFHDRIGSSDKTVRLYDGSVHDLLAEKRDM
VMEDMVSWASRRL*
back to top

spliced messenger RNA

>Gvermi12146.t1 ID=Gvermi12146.t1|Name=Gvermi12146.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1092bp|location=Sequence derived from alignment at ScGOVlb_3404:3561356..3562447- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGCCGCGCTCAGCTGGCTGTTTCCCTCCGGCCACCGCCTGCCCTC
CGGCCGGGCGCCGTCCTTCACGCAGCCCTTGTTCCCGCCGCCGCACGCTA
CGCGCCCCTCGCCGCCGCCCGGCGTGCTGGCCTGCCCGCTGCCGCAGCCG
CGCCTGCACGCGCGCCACGCCACCGTCGGCTGGCGCGTCGACGAGTGGGC
TGACCACAGCGCATACTACGTGCTCAACTCGCGCGGGCAGCGCATCTTCG
TGCAGACCTGGCGCCCGCGCCACCGCACGCGCTCCTTCTGGCACCGCCTC
TTTCCACGCCGCCGCGCGGAGCGCGGCATCATTTACATCATCCACGGCCT
CAACGACCACTCCAACAAGTACACGCGCGTGGCGAGGGCGTGGGTGGACG
CGGGGTACGTTGTCATCGCGCACGATTTTCACGGCCACGGCCGCTCTGAT
GGCTACAGGGCGTATACTTCCTCCATGCAGCACTACGTCGATGACGCGCA
ACACACCATTCAGCACGCCAAACAGCGGTTGCCCAGACGCCTTTCTACGC
TGCCCAGCTTCATTCTGGCCCATTCCCTTGGAGGCGCCGTTGCCATTCAC
CTCGCCAGGGACGCTCCGTGCGGCACGTTTAGGGGGGTCATGCTCACGGC
GCCCGCCGTGCGCGTGTACCCCAAGCCGATTTTGAAGCTGTTTGCACCGC
TGCTGGGCACGCTGGCGCCGTTGCTGCCGGTGCAGAGGCTCAAATTTGAC
CGGAAGAGACGGCGAGCGAAAAGCAATGAGCACGACGCGTACGACAGTCG
AGACGACCCGTTGGTTGTGCGCAGCCCCGTGCGAGCGAGAGTGGGCTATG
AGGTGCTCAAGAGCTGTGAAAAGATCATGAGCGAGGCGGAGCGCTTTCGC
GTGCCCGTGTTTGTGGCGCATTCTCGGAAGGATCGCGTGACAAACGCGAA
GGGGACGATCGACTTCCACGACCGCATTGGCAGTAGCGACAAGACCGTTC
GGCTGTATGACGGAAGTGTGCACGACCTGCTGGCCGAGAAGCGCGACATG
GTCATGGAGGACATGGTGTCATGGGCTTCGCGCCGTCTGTGA
back to top

protein sequence of Gvermi12146.t1

>Gvermi12146.t1 ID=Gvermi12146.t1|Name=Gvermi12146.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=364bp
MEAALSWLFPSGHRLPSGRAPSFTQPLFPPPHATRPSPPPGVLACPLPQP
RLHARHATVGWRVDEWADHSAYYVLNSRGQRIFVQTWRPRHRTRSFWHRL
FPRRRAERGIIYIIHGLNDHSNKYTRVARAWVDAGYVVIAHDFHGHGRSD
GYRAYTSSMQHYVDDAQHTIQHAKQRLPRRLSTLPSFILAHSLGGAVAIH
LARDAPCGTFRGVMLTAPAVRVYPKPILKLFAPLLGTLAPLLPVQRLKFD
RKRRRAKSNEHDAYDSRDDPLVVRSPVRARVGYEVLKSCEKIMSEAERFR
VPVFVAHSRKDRVTNAKGTIDFHDRIGSSDKTVRLYDGSVHDLLAEKRDM
VMEDMVSWASRRL*
back to top

mRNA from alignment at ScGOVlb_3404:3561356..3562447-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12146.t1 ID=Gvermi12146.t1|Name=Gvermi12146.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1092bp|location=Sequence derived from alignment at ScGOVlb_3404:3561356..3562447- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGGCCGCGCTCAGCTGGCTGTTTCCCTCCGGCCACCGCCTGCCCTC
CGGCCGGGCGCCGTCCTTCACGCAGCCCTTGTTCCCGCCGCCGCACGCTA
CGCGCCCCTCGCCGCCGCCCGGCGTGCTGGCCTGCCCGCTGCCGCAGCCG
CGCCTGCACGCGCGCCACGCCACCGTCGGCTGGCGCGTCGACGAGTGGGC
TGACCACAGCGCATACTACGTGCTCAACTCGCGCGGGCAGCGCATCTTCG
TGCAGACCTGGCGCCCGCGCCACCGCACGCGCTCCTTCTGGCACCGCCTC
TTTCCACGCCGCCGCGCGGAGCGCGGCATCATTTACATCATCCACGGCCT
CAACGACCACTCCAACAAGTACACGCGCGTGGCGAGGGCGTGGGTGGACG
CGGGGTACGTTGTCATCGCGCACGATTTTCACGGCCACGGCCGCTCTGAT
GGCTACAGGGCGTATACTTCCTCCATGCAGCACTACGTCGATGACGCGCA
ACACACCATTCAGCACGCCAAACAGCGGTTGCCCAGACGCCTTTCTACGC
TGCCCAGCTTCATTCTGGCCCATTCCCTTGGAGGCGCCGTTGCCATTCAC
CTCGCCAGGGACGCTCCGTGCGGCACGTTTAGGGGGGTCATGCTCACGGC
GCCCGCCGTGCGCGTGTACCCCAAGCCGATTTTGAAGCTGTTTGCACCGC
TGCTGGGCACGCTGGCGCCGTTGCTGCCGGTGCAGAGGCTCAAATTTGAC
CGGAAGAGACGGCGAGCGAAAAGCAATGAGCACGACGCGTACGACAGTCG
AGACGACCCGTTGGTTGTGCGCAGCCCCGTGCGAGCGAGAGTGGGCTATG
AGGTGCTCAAGAGCTGTGAAAAGATCATGAGCGAGGCGGAGCGCTTTCGC
GTGCCCGTGTTTGTGGCGCATTCTCGGAAGGATCGCGTGACAAACGCGAA
GGGGACGATCGACTTCCACGACCGCATTGGCAGTAGCGACAAGACCGTTC
GGCTGTATGACGGAAGTGTGCACGACCTGCTGGCCGAGAAGCGCGACATG
GTCATGGAGGACATGGTGTCATGGGCTTCGCGCCGTCTGTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:3561356..3562447-

>Gvermi12146.t1 ID=Gvermi12146.t1|Name=Gvermi12146.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1092bp|location=Sequence derived from alignment at ScGOVlb_3404:3561356..3562447- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGGCCGCGCTCAGCTGGCTGTTTCCCTCCGGCCACCGCCTGCCCTC
CGGCCGGGCGCCGTCCTTCACGCAGCCCTTGTTCCCGCCGCCGCACGCTA
CGCGCCCCTCGCCGCCGCCCGGCGTGCTGGCCTGCCCGCTGCCGCAGCCG
CGCCTGCACGCGCGCCACGCCACCGTCGGCTGGCGCGTCGACGAGTGGGC
TGACCACAGCGCATACTACGTGCTCAACTCGCGCGGGCAGCGCATCTTCG
TGCAGACCTGGCGCCCGCGCCACCGCACGCGCTCCTTCTGGCACCGCCTC
TTTCCACGCCGCCGCGCGGAGCGCGGCATCATTTACATCATCCACGGCCT
CAACGACCACTCCAACAAGTACACGCGCGTGGCGAGGGCGTGGGTGGACG
CGGGGTACGTTGTCATCGCGCACGATTTTCACGGCCACGGCCGCTCTGAT
GGCTACAGGGCGTATACTTCCTCCATGCAGCACTACGTCGATGACGCGCA
ACACACCATTCAGCACGCCAAACAGCGGTTGCCCAGACGCCTTTCTACGC
TGCCCAGCTTCATTCTGGCCCATTCCCTTGGAGGCGCCGTTGCCATTCAC
CTCGCCAGGGACGCTCCGTGCGGCACGTTTAGGGGGGTCATGCTCACGGC
GCCCGCCGTGCGCGTGTACCCCAAGCCGATTTTGAAGCTGTTTGCACCGC
TGCTGGGCACGCTGGCGCCGTTGCTGCCGGTGCAGAGGCTCAAATTTGAC
CGGAAGAGACGGCGAGCGAAAAGCAATGAGCACGACGCGTACGACAGTCG
AGACGACCCGTTGGTTGTGCGCAGCCCCGTGCGAGCGAGAGTGGGCTATG
AGGTGCTCAAGAGCTGTGAAAAGATCATGAGCGAGGCGGAGCGCTTTCGC
GTGCCCGTGTTTGTGGCGCATTCTCGGAAGGATCGCGTGACAAACGCGAA
GGGGACGATCGACTTCCACGACCGCATTGGCAGTAGCGACAAGACCGTTC
GGCTGTATGACGGAAGTGTGCACGACCTGCTGGCCGAGAAGCGCGACATG
GTCATGGAGGACATGGTGTCATGGGCTTCGCGCCGTCTGTGA
back to top