Gvermi12442.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12442.t1
Unique NameGvermi12442.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length768
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4761234..4764053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4792.ETI46347
Max annot lvl4776|Peronosporales
Evalue1.58e-17
EggNOG OGs2CTDP@1|root,2RFZI@2759|Eukaryota,3QHHE@4776|Peronosporales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12442Gvermi12442Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4761234..4764053 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12442.t1Gvermi12442.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4761234..4764053 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12442.t1.start1Gvermi12442.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4761234..4761236 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12442.t1.CDS1Gvermi12442.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4761234..4762564 +
Gvermi12442.t1.CDS2Gvermi12442.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4762743..4763083 +
Gvermi12442.t1.CDS3Gvermi12442.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4763422..4764053 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12442.t1.exon1Gvermi12442.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4761234..4762564 +
Gvermi12442.t1.exon2Gvermi12442.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4762743..4763083 +
Gvermi12442.t1.exon3Gvermi12442.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4763422..4764053 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12442.t1.intron1Gvermi12442.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4762565..4762742 +
Gvermi12442.t1.intron2Gvermi12442.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4763084..4763421 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12442.t1.stop1Gvermi12442.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4764051..4764053 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12442.t1 ID=Gvermi12442.t1|Name=Gvermi12442.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=768bp
MLSFASEGEQDDYLSVSDSNDESCNQSESVGSESLNADQVSHISEQELRQ
LRVESYLGYAAGGKLVHSNAQDALQIAVEDIWSSLFCDNFDTMMDDSLDV
QNLRDETNILEDAERVMHSRQGGLREWDYGSPFQQFSIDIDGINKILGRR
FIRETNSILDKVTKEIQQEGTEGVLTATSLTRLSILNVFLPEHVLQKIVS
NVNRVLKHKCKRETTPFEITGVLILHVLAASYSSTVGTITAKRNRDFFFQ
MEIESGSYSEIWAALSCTDERRQRVEQFGDGWCNYPPRANSMITELEDEL
AAVNRLFLYVPGVAIFSLDDDHQRLRSRSVAQLTNLSHVNNLQKALGPVN
NAICSALNPVFLASHYSRPGEKITDVWERLIRLIQGVPTAGPVRPMVDAI
FASDRRYNSKATIEYINERIGATGIGMHKRSLDYPFCIRRWSHSFTLIPK
AGYESPKSAAEREIFHFISADSVSQTSPSGNRDNNVMDTVARLKVRQVLS
NVDEVTLLQSEDPGWFLGRAFQLTSRTSQAFLRAICEDYETNTEALSFLI
SGKQMDYKQHEEAVTIVMFATAENLQNKTKSEILMLLSSVGHTLSQALRK
SQLIDKVMELRSRVHNGNLKLTSTAQQTLSPSQHKEANKKKLLDGLYLAS
LSSWIMKPLVSTPGMKEGNFNESQVLKALPSFFECNVVVNGSSLYSENSE
LHDQKYKIEYIRTTGLISSRRDPMISDSPDAVLCFTDCDEAQHVRAVEIK
TMTSLNNVDASEQRKHD*
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spliced messenger RNA

>Gvermi12442.t1 ID=Gvermi12442.t1|Name=Gvermi12442.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2304bp|location=Sequence derived from alignment at ScGOVlb_3404:4761234..4764053+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atgctttcatttgcttcagagggagaacaggatgactatctttctgtttc
agacagtaacgacgaatcatgtaatcagtcagaaagtgttggctcggaat
ctctaaatgcagaccaggtgtcccacatttcggaacaagaacttcgtcaa
cttcgcgttgaaagttatttagggtacgctgcaggaggtaaattagttca
ttctaatgcccaagatgcgcttcaaattgctgtcgaagacatttggtctt
cactgttttgcgacaattttgacacgatgatggatgatagtctggatgtg
cagaatttaagagatgaaaccaatattttggaagatgcggaacgcgtcat
gcacagtagacaaggaggattaagggaatgggattacggatctccattcc
agcaattctcgattgacattgatggcattaacaagattcttggaagacga
ttcattcgtgagacaaattccatactggacaaagtcacgaaggagataca
acaagagggaacagaaggagttctgactgccactagtttgacaaggctga
gtattttgaatgtgttcttgcctgaacatgtgttgcaaaaaatcgtgtcg
aatgttaatcgagttcttaagcacaaatgcaagagagaaactactccttt
cgagattactggtgtgcttattctacatgtattggcagcttcgtactctt
ccacggttggtacaattacggccaaacggaaccgcgattttttcttccag
atggagatagaaagtggaagctactccgaaatttgggcagcactatcttg
tactgatgaaagaaggcaaagagtagaacaatttggtgatgggtggtgta
actatccgccaagagcaaactcgatgattacagagcttgaagatgagttg
gctgccgttaatcgtcttttcctttacgttcctggggtggccatttttag
tcttgatgacgaccatcaaagattgaggtcaagatctgtagcacaattaa
caaacttgtcccacgtcaacaatcttcaaaaggctctaggtcctgtgaac
aacgccatttgttctgcactcaatccggtgttcttggccagccactattc
aaggccaggagaaaagataaccgacgtctgggagaggttaataagactca
ttcaaggggttccaactgccgggcctgtccggcctatggtagatgctatt
tttgcttcggacagaagatacaattctaaagcgactattgaatatatcaa
cgaaagaatcggtgcaactggtattggaatgcacaaaagaagcttggatt
atcctttttgtattcggagatggtcccattcATTTACTTTGATTCCTAAA
GCAGGGTACGAATCTCCGAAAAGCGCAGCTGAAAGAGAGATATTTCATTT
CATCTCTGCCGACTCTGTTTCACAGACATCACCATCCGGTAATCGTGACA
ACAACGTCATGGATACTGTTGCAAGGTTAAAAGTACGACAAGTTCTGTCC
AACGTGGATGAAGTAACATTGCTTCAATCGGAAGACCCTGGGTGGTTTCT
TGGCAGAGCTTTTCAGTTAACATCACGAACCTCGCAGGCTTTCCTTCGAG
CCATATGCGAAGACTATGAGACCAATACAGAAGCACTCTCGTTCCTAATT
AGTGGAAAGCAAATGGACTACAAACAACATGAAGAGGCTGTTACTATCGT
TATGTTTGCTACTGCCGAGAACCTTCAGAACAAGACAAAGAGCGAAATTC
TTATGTTACTAAGTTCTGTTGGACACACACTGTCACAAGCGCTTCGGAAA
TCTCAGCTGATCGACAAAGTGATGGAACTCAGGTCACGAGTGCACAATGG
CAATCTTAAATTGACAAGTACAGCACAGCAAACCTTGAGCCCCTCGCAAC
ACAAGGAGGCCAACAAAAAGAAACTTCTAGATGGTCTTTACCTCGCATCG
CTCTCCTCTTGGATCATGAAGCCGCTTGTTAGTACTCCGGGCATGAAAGA
AGGAAACTTCAACGAATCGCAGGTTTTGAAAGCATTACCTTCATTCTTTG
AGTGTAATGTGGTAGTGAATGGTAGTTCGTTATATTCGGAGAACAGCGAA
CTCCATGATCAGAAGTATAAGATAGAGTATATACGAACAACCGGACTGAT
TTCGTCTCGTAGAGACCCAATGATTTCAGATAGCCCCGACGCAGTTTTGT
GCTTTACCGACTGCGACGAAGCACAGCATGTCCGCGCTGTTGAGATCAAA
ACCATGACCTCTTTGAACAATGTGGACGCATCAGAACAGCGAAAACACGA
TTAA
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protein sequence of Gvermi12442.t1

>Gvermi12442.t1 ID=Gvermi12442.t1|Name=Gvermi12442.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=768bp
MLSFASEGEQDDYLSVSDSNDESCNQSESVGSESLNADQVSHISEQELRQ
LRVESYLGYAAGGKLVHSNAQDALQIAVEDIWSSLFCDNFDTMMDDSLDV
QNLRDETNILEDAERVMHSRQGGLREWDYGSPFQQFSIDIDGINKILGRR
FIRETNSILDKVTKEIQQEGTEGVLTATSLTRLSILNVFLPEHVLQKIVS
NVNRVLKHKCKRETTPFEITGVLILHVLAASYSSTVGTITAKRNRDFFFQ
MEIESGSYSEIWAALSCTDERRQRVEQFGDGWCNYPPRANSMITELEDEL
AAVNRLFLYVPGVAIFSLDDDHQRLRSRSVAQLTNLSHVNNLQKALGPVN
NAICSALNPVFLASHYSRPGEKITDVWERLIRLIQGVPTAGPVRPMVDAI
FASDRRYNSKATIEYINERIGATGIGMHKRSLDYPFCIRRWSHSFTLIPK
AGYESPKSAAEREIFHFISADSVSQTSPSGNRDNNVMDTVARLKVRQVLS
NVDEVTLLQSEDPGWFLGRAFQLTSRTSQAFLRAICEDYETNTEALSFLI
SGKQMDYKQHEEAVTIVMFATAENLQNKTKSEILMLLSSVGHTLSQALRK
SQLIDKVMELRSRVHNGNLKLTSTAQQTLSPSQHKEANKKKLLDGLYLAS
LSSWIMKPLVSTPGMKEGNFNESQVLKALPSFFECNVVVNGSSLYSENSE
LHDQKYKIEYIRTTGLISSRRDPMISDSPDAVLCFTDCDEAQHVRAVEIK
TMTSLNNVDASEQRKHD*
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mRNA from alignment at ScGOVlb_3404:4761234..4764053+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12442.t1 ID=Gvermi12442.t1|Name=Gvermi12442.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2820bp|location=Sequence derived from alignment at ScGOVlb_3404:4761234..4764053+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgctttcatttgcttcagagggagaacaggatgactatctttctgtttc
agacagtaacgacgaatcatgtaatcagtcagaaagtgttggctcggaat
ctctaaatgcagaccaggtgtcccacatttcggaacaagaacttcgtcaa
cttcgcgttgaaagttatttagggtacgctgcaggaggtaaattagttca
ttctaatgcccaagatgcgcttcaaattgctgtcgaagacatttggtctt
cactgttttgcgacaattttgacacgatgatggatgatagtctggatgtg
cagaatttaagagatgaaaccaatattttggaagatgcggaacgcgtcat
gcacagtagacaaggaggattaagggaatgggattacggatctccattcc
agcaattctcgattgacattgatggcattaacaagattcttggaagacga
ttcattcgtgagacaaattccatactggacaaagtcacgaaggagataca
acaagagggaacagaaggagttctgactgccactagtttgacaaggctga
gtattttgaatgtgttcttgcctgaacatgtgttgcaaaaaatcgtgtcg
aatgttaatcgagttcttaagcacaaatgcaagagagaaactactccttt
cgagattactggtgtgcttattctacatgtattggcagcttcgtactctt
ccacggttggtacaattacggccaaacggaaccgcgattttttcttccag
atggagatagaaagtggaagctactccgaaatttgggcagcactatcttg
tactgatgaaagaaggcaaagagtagaacaatttggtgatgggtggtgta
actatccgccaagagcaaactcgatgattacagagcttgaagatgagttg
gctgccgttaatcgtcttttcctttacgttcctggggtggccatttttag
tcttgatgacgaccatcaaagattgaggtcaagatctgtagcacaattaa
caaacttgtcccacgtcaacaatcttcaaaaggctctaggtcctgtgaac
aacgccatttgttctgcactcaatccggtgttcttggccagccactattc
aaggccaggagaaaagataaccgacgtctgggagaggttaataagactca
ttcaaggggttccaactgccgggcctgtccggcctatggtagatgctatt
tttgcttcggacagaagatacaattctaaagcgactattgaatatatcaa
cgaaagaatcggtgcaactggtattggaatgcacaaaagaagcttggatt
atcctttttgtattcggagatggtcccattcgtaagcgacataaaggatt
ggttgtcagtgaacggggttgtcgcgctatttacaatgcACGTCGGAGGC
CAAATACTGTCTCCGGAAGAACTGTGGAAGCTATTGTGTACCGCGAAAGT
TTAGGTGGACGCATTGCAGCCTTATACCAAAACAACGACCGGTTGTTCTC
TGCCAACAGATTTACTTTGATTCCTAAAGCAGGGTACGAATCTCCGAAAA
GCGCAGCTGAAAGAGAGATATTTCATTTCATCTCTGCCGACTCTGTTTCA
CAGACATCACCATCCGGTAATCGTGACAACAACGTCATGGATACTGTTGC
AAGGTTAAAAGTACGACAAGTTCTGTCCAACGTGGATGAAGTAACATTGC
TTCAATCGGAAGACCCTGGGTGGTTTCTTGGCAGAGCTTTTCAGTTAACA
TCACGAACCTCGCAGGCTTTCCTTCGAGCCATATGCGAAGACTATGAGAC
CAATACAGAAGCACTCTCGTTCCTAATTAGTGGAAAGCAAATGGACTACA
GTCATGTCATCTTTCCTAGCAGTGCAGACGAAACAAAACAGTTTCTGCTT
TCAAAGTTGGTCATACTTTGCCATTCGTTAAACCTATCAACCAATACTGC
GCCAACAACAGAACAACATGAAGAGGCTGTTACTATCGTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCTAGCAGT
GCAGACGAAACAAAACAGTTTCTGCTTTCAAAGTTGGTCATACTTTGCCA
TTCGTTAAACCTATCAACCAATACTGCGCCAACAACAGAACAACATGAAG
AGGCTGTTACTATCGTTATGTTTGCTACTGCCGAGAACCTTCAGAACAAG
ACAAAGAGCGAAATTCTTATGTTACTAAGTTCTGTTGGACACACACTGTC
ACAAGCGCTTCGGAAATCTCAGCTGATCGACAAAGTGATGGAACTCAGGT
CACGAGTGCACAATGGCAATCTTAAATTGACAAGTACAGCACAGCAAACC
TTGAGCCCCTCGCAACACAAGGAGGCCAACAAAAAGAAACTTCTAGATGG
TCTTTACCTCGCATCGCTCTCCTCTTGGATCATGAAGCCGCTTGTTAGTA
CTCCGGGCATGAAAGAAGGAAACTTCAACGAATCGCAGGTTTTGAAAGCA
TTACCTTCATTCTTTGAGTGTAATGTGGTAGTGAATGGTAGTTCGTTATA
TTCGGAGAACAGCGAACTCCATGATCAGAAGTATAAGATAGAGTATATAC
GAACAACCGGACTGATTTCGTCTCGTAGAGACCCAATGATTTCAGATAGC
CCCGACGCAGTTTTGTGCTTTACCGACTGCGACGAAGCACAGCATGTCCG
CGCTGTTGAGATCAAAACCATGACCTCTTTGAACAATGTGGACGCATCAG
AACAGCGAAAACACGATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4761234..4764053+

>Gvermi12442.t1 ID=Gvermi12442.t1|Name=Gvermi12442.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2304bp|location=Sequence derived from alignment at ScGOVlb_3404:4761234..4764053+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgctttcatttgcttcagagggagaacaggatgactatctttctgtttc
agacagtaacgacgaatcatgtaatcagtcagaaagtgttggctcggaat
ctctaaatgcagaccaggtgtcccacatttcggaacaagaacttcgtcaa
cttcgcgttgaaagttatttagggtacgctgcaggaggtaaattagttca
ttctaatgcccaagatgcgcttcaaattgctgtcgaagacatttggtctt
cactgttttgcgacaattttgacacgatgatggatgatagtctggatgtg
cagaatttaagagatgaaaccaatattttggaagatgcggaacgcgtcat
gcacagtagacaaggaggattaagggaatgggattacggatctccattcc
agcaattctcgattgacattgatggcattaacaagattcttggaagacga
ttcattcgtgagacaaattccatactggacaaagtcacgaaggagataca
acaagagggaacagaaggagttctgactgccactagtttgacaaggctga
gtattttgaatgtgttcttgcctgaacatgtgttgcaaaaaatcgtgtcg
aatgttaatcgagttcttaagcacaaatgcaagagagaaactactccttt
cgagattactggtgtgcttattctacatgtattggcagcttcgtactctt
ccacggttggtacaattacggccaaacggaaccgcgattttttcttccag
atggagatagaaagtggaagctactccgaaatttgggcagcactatcttg
tactgatgaaagaaggcaaagagtagaacaatttggtgatgggtggtgta
actatccgccaagagcaaactcgatgattacagagcttgaagatgagttg
gctgccgttaatcgtcttttcctttacgttcctggggtggccatttttag
tcttgatgacgaccatcaaagattgaggtcaagatctgtagcacaattaa
caaacttgtcccacgtcaacaatcttcaaaaggctctaggtcctgtgaac
aacgccatttgttctgcactcaatccggtgttcttggccagccactattc
aaggccaggagaaaagataaccgacgtctgggagaggttaataagactca
ttcaaggggttccaactgccgggcctgtccggcctatggtagatgctatt
tttgcttcggacagaagatacaattctaaagcgactattgaatatatcaa
cgaaagaatcggtgcaactggtattggaatgcacaaaagaagcttggatt
atcctttttgtattcggagatggtcccattcATTTACTTTGATTCCTAAA
GCAGGGTACGAATCTCCGAAAAGCGCAGCTGAAAGAGAGATATTTCATTT
CATCTCTGCCGACTCTGTTTCACAGACATCACCATCCGGTAATCGTGACA
ACAACGTCATGGATACTGTTGCAAGGTTAAAAGTACGACAAGTTCTGTCC
AACGTGGATGAAGTAACATTGCTTCAATCGGAAGACCCTGGGTGGTTTCT
TGGCAGAGCTTTTCAGTTAACATCACGAACCTCGCAGGCTTTCCTTCGAG
CCATATGCGAAGACTATGAGACCAATACAGAAGCACTCTCGTTCCTAATT
AGTGGAAAGCAAATGGACTACAAACAACATGAAGAGGCTGTTACTATCGT
TATGTTTGCTACTGCCGAGAACCTTCAGAACAAGACAAAGAGCGAAATTC
TTATGTTACTAAGTTCTGTTGGACACACACTGTCACAAGCGCTTCGGAAA
TCTCAGCTGATCGACAAAGTGATGGAACTCAGGTCACGAGTGCACAATGG
CAATCTTAAATTGACAAGTACAGCACAGCAAACCTTGAGCCCCTCGCAAC
ACAAGGAGGCCAACAAAAAGAAACTTCTAGATGGTCTTTACCTCGCATCG
CTCTCCTCTTGGATCATGAAGCCGCTTGTTAGTACTCCGGGCATGAAAGA
AGGAAACTTCAACGAATCGCAGGTTTTGAAAGCATTACCTTCATTCTTTG
AGTGTAATGTGGTAGTGAATGGTAGTTCGTTATATTCGGAGAACAGCGAA
CTCCATGATCAGAAGTATAAGATAGAGTATATACGAACAACCGGACTGAT
TTCGTCTCGTAGAGACCCAATGATTTCAGATAGCCCCGACGCAGTTTTGT
GCTTTACCGACTGCGACGAAGCACAGCATGTCCGCGCTGTTGAGATCAAA
ACCATGACCTCTTTGAACAATGTGGACGCATCAGAACAGCGAAAACACGA
TTAA
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