Gvermi12398.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12398.t1
Unique NameGvermi12398.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length149
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4557824..4558270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1162668.LFE_0893
Preferred namerplN
PFAMsRibosomal_L14
Max annot lvl40117|Nitrospirae
KEGG koko:K02874
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904
Evalue4.8e-28
EggNOG OGsCOG0093@1|root,COG0093@2|Bacteria,3J0JD@40117|Nitrospirae
DescriptionBinds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12398Gvermi12398Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4557824..4558270 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12398.t1.stop1Gvermi12398.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4557824..4557826 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12398.t1.CDS1Gvermi12398.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4557824..4558270 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12398.t1.exon1Gvermi12398.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4557824..4558270 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12398.t1.start1Gvermi12398.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4558268..4558270 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12398.t1Gvermi12398.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4557824..4558270 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12398.t1 ID=Gvermi12398.t1|Name=Gvermi12398.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=149bp
MVQMRTVLRVADNSGAKTVRCINILRRKRQRPSGNVGSELVVSVTANDRS
VTTKKAKKGEIHRALVIRSKNEPLRNDGGFVRMGETAAVLLNAEGAPLGT
RIRGPVSAALDRKRFLKVLSLSRATLFSTLAGRTKGDVSRPGVITRLL*
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spliced messenger RNA

>Gvermi12398.t1 ID=Gvermi12398.t1|Name=Gvermi12398.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=447bp|location=Sequence derived from alignment at ScGOVlb_3404:4557824..4558270- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCAGATGCGAACAGTGTTGCGAGTTGCAGACAACTCTGGCGCTAA
AACCGTACGTTGCATCAACATCCTTCGTCGCAAGCGACAGAGACCTTCGG
GAAACGTCGGTTCCGAACTTGTCGTATCAGTAACAGCAAACGACCGATCG
GTCACAACGAAGAAAGCCAAAAAAGGAGAAATCCATCGTGCACTCGTGAT
CCGCTCGAAAAACGAACCGTTGAGAAACGACGGCGGTTTTGTGCGCATGG
GGGAAACAGCTGCCGTGCTTCTAAACGCCGAGGGTGCACCCTTGGGTACC
AGAATCAGGGGGCCTGTTTCGGCCGCTCTGGATAGGAAGCGATTCTTGAA
GGTCCTTTCGCTCTCTCGCGCTACCTTGTTTTCGACTTTAGCTGGTAGAA
CCAAAGGGGATGTCTCACGCCCGGGTGTTATTACTCGGCTACTGTGA
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protein sequence of Gvermi12398.t1

>Gvermi12398.t1 ID=Gvermi12398.t1|Name=Gvermi12398.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=149bp
MVQMRTVLRVADNSGAKTVRCINILRRKRQRPSGNVGSELVVSVTANDRS
VTTKKAKKGEIHRALVIRSKNEPLRNDGGFVRMGETAAVLLNAEGAPLGT
RIRGPVSAALDRKRFLKVLSLSRATLFSTLAGRTKGDVSRPGVITRLL*
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mRNA from alignment at ScGOVlb_3404:4557824..4558270-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12398.t1 ID=Gvermi12398.t1|Name=Gvermi12398.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=447bp|location=Sequence derived from alignment at ScGOVlb_3404:4557824..4558270- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGCAGATGCGAACAGTGTTGCGAGTTGCAGACAACTCTGGCGCTAA
AACCGTACGTTGCATCAACATCCTTCGTCGCAAGCGACAGAGACCTTCGG
GAAACGTCGGTTCCGAACTTGTCGTATCAGTAACAGCAAACGACCGATCG
GTCACAACGAAGAAAGCCAAAAAAGGAGAAATCCATCGTGCACTCGTGAT
CCGCTCGAAAAACGAACCGTTGAGAAACGACGGCGGTTTTGTGCGCATGG
GGGAAACAGCTGCCGTGCTTCTAAACGCCGAGGGTGCACCCTTGGGTACC
AGAATCAGGGGGCCTGTTTCGGCCGCTCTGGATAGGAAGCGATTCTTGAA
GGTCCTTTCGCTCTCTCGCGCTACCTTGTTTTCGACTTTAGCTGGTAGAA
CCAAAGGGGATGTCTCACGCCCGGGTGTTATTACTCGGCTACTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4557824..4558270-

>Gvermi12398.t1 ID=Gvermi12398.t1|Name=Gvermi12398.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=447bp|location=Sequence derived from alignment at ScGOVlb_3404:4557824..4558270- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGCAGATGCGAACAGTGTTGCGAGTTGCAGACAACTCTGGCGCTAA
AACCGTACGTTGCATCAACATCCTTCGTCGCAAGCGACAGAGACCTTCGG
GAAACGTCGGTTCCGAACTTGTCGTATCAGTAACAGCAAACGACCGATCG
GTCACAACGAAGAAAGCCAAAAAAGGAGAAATCCATCGTGCACTCGTGAT
CCGCTCGAAAAACGAACCGTTGAGAAACGACGGCGGTTTTGTGCGCATGG
GGGAAACAGCTGCCGTGCTTCTAAACGCCGAGGGTGCACCCTTGGGTACC
AGAATCAGGGGGCCTGTTTCGGCCGCTCTGGATAGGAAGCGATTCTTGAA
GGTCCTTTCGCTCTCTCGCGCTACCTTGTTTTCGACTTTAGCTGGTAGAA
CCAAAGGGGATGTCTCACGCCCGGGTGTTATTACTCGGCTACTGTGA
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