Gvermi12354.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12354.t1
Unique NameGvermi12354.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length145
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4317381..4317879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT485CT
PFAMsRibosomal_S7
Max annot lvl2759|Eukaryota
KEGG koko:K02992
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Evalue3.45e-39
EggNOG OGsCOG0049@1|root,KOG3291@2759|Eukaryota
DescriptionrRNA binding
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12354Gvermi12354Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4317381..4317879 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12354.t1Gvermi12354.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4317381..4317879 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12354.t1.start1Gvermi12354.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4317381..4317383 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12354.t1.CDS1Gvermi12354.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4317381..4317658 +
Gvermi12354.t1.CDS2Gvermi12354.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4317723..4317879 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12354.t1.exon1Gvermi12354.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4317381..4317658 +
Gvermi12354.t1.exon2Gvermi12354.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4317723..4317879 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12354.t1.intron1Gvermi12354.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4317659..4317722 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12354.t1.stop1Gvermi12354.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4317877..4317879 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12354.t1 ID=Gvermi12354.t1|Name=Gvermi12354.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=145bp
MSLHLSDPIVHKLVRVIMKDGKKHSALRIVDEAFHILRTQQDVNSPVSLL
HRAVANAAPVVETRRYKVGGRALQVPLPCAPKRSQSLAMRFIRDAFRERK
EHGGGLRLANELAALDKRQGGAFARREELHKRAETNRAFAHYAR*
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spliced messenger RNA

>Gvermi12354.t1 ID=Gvermi12354.t1|Name=Gvermi12354.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=435bp|location=Sequence derived from alignment at ScGOVlb_3404:4317381..4317879+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACTACATCTTTCCGATCCAATCGTGCACAAACTTGTGCGCGTTAT
CATGAAAGACGGAAAGAAGCACTCCGCGTTACGAATCGTTGACGAAGCAT
TTCACATCCTTCGCACGCAGCAGGACGTTAACTCTCCAGTGTCTCTTCTA
CACCGAGCTGTTGCAAACGCTGCTCCAGTGGTCGAAACACGGCGCTATAA
GGTCGGAGGAAGGGCTTTACAAGTTCCGTTACCATGCGCCCCTAAACGTT
CCCAGAGTTTGGCAATGCGCTTCATAAGAGACGCTTTCCGGGAAAGAAAA
GAACACGGAGGTGGACTGAGACTAGCGAATGAGCTGGCAGCATTAGATAA
GAGACAGGGTGGCGCTTTCGCACGCAGGGAAGAGTTGCATAAAAGAGCGG
AGACCAATCGAGCCTTTGCACATTATGCTAGGTAA
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protein sequence of Gvermi12354.t1

>Gvermi12354.t1 ID=Gvermi12354.t1|Name=Gvermi12354.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=145bp
MSLHLSDPIVHKLVRVIMKDGKKHSALRIVDEAFHILRTQQDVNSPVSLL
HRAVANAAPVVETRRYKVGGRALQVPLPCAPKRSQSLAMRFIRDAFRERK
EHGGGLRLANELAALDKRQGGAFARREELHKRAETNRAFAHYAR*
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mRNA from alignment at ScGOVlb_3404:4317381..4317879+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12354.t1 ID=Gvermi12354.t1|Name=Gvermi12354.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=499bp|location=Sequence derived from alignment at ScGOVlb_3404:4317381..4317879+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCACTACATCTTTCCGATCCAATCGTGCACAAACTTGTGCGCGTTAT
CATGAAAGACGGAAAGAAGCACTCCGCGTTACGAATCGTTGACGAAGCAT
TTCACATCCTTCGCACGCAGCAGGACGTTAACTCTCCAGTGTCTCTTCTA
CACCGAGCTGTTGCAAACGCTGCTCCAGTGGTCGAAACACGGCGCTATAA
GGTCGGAGGAAGGGCTTTACAAGTTCCGTTACCATGCGCCCCTAAACGTT
CCCAGAGTTTGGCAATGCGCTTCATAAGGTAAGGCGTTCACTGCCTTTTT
GTACAAAGACTCAGCATCGCTGACGAAATCTTTGTTCCTCAGAGACGCTT
TCCGGGAAAGAAAAGAACACGGAGGTGGACTGAGACTAGCGAATGAGCTG
GCAGCATTAGATAAGAGACAGGGTGGCGCTTTCGCACGCAGGGAAGAGTT
GCATAAAAGAGCGGAGACCAATCGAGCCTTTGCACATTATGCTAGGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4317381..4317879+

>Gvermi12354.t1 ID=Gvermi12354.t1|Name=Gvermi12354.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=435bp|location=Sequence derived from alignment at ScGOVlb_3404:4317381..4317879+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCACTACATCTTTCCGATCCAATCGTGCACAAACTTGTGCGCGTTAT
CATGAAAGACGGAAAGAAGCACTCCGCGTTACGAATCGTTGACGAAGCAT
TTCACATCCTTCGCACGCAGCAGGACGTTAACTCTCCAGTGTCTCTTCTA
CACCGAGCTGTTGCAAACGCTGCTCCAGTGGTCGAAACACGGCGCTATAA
GGTCGGAGGAAGGGCTTTACAAGTTCCGTTACCATGCGCCCCTAAACGTT
CCCAGAGTTTGGCAATGCGCTTCATAAGAGACGCTTTCCGGGAAAGAAAA
GAACACGGAGGTGGACTGAGACTAGCGAATGAGCTGGCAGCATTAGATAA
GAGACAGGGTGGCGCTTTCGCACGCAGGGAAGAGTTGCATAAAAGAGCGG
AGACCAATCGAGCCTTTGCACATTATGCTAGGTAA
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