Gvermi12486.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12486.t1
Unique NameGvermi12486.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length671
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5353343..5355463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog148304.MAPG_03433T0
Max annot lvl4751|Fungi
Evalue8.95e-12
EggNOG OGs2CUME@1|root,2RN2Y@2759|Eukaryota,38RSC@33154|Opisthokonta,3PTI8@4751|Fungi,3RCXG@4890|Ascomycota,21ITS@147550|Sordariomycetes,41R1K@639021|Magnaporthales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12486Gvermi12486Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 5353343..5355463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12486.t1Gvermi12486.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 5353343..5355463 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12486.t1.stop1Gvermi12486.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 5353343..5353345 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12486.t1.CDS1Gvermi12486.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5353343..5354116 -
Gvermi12486.t1.CDS2Gvermi12486.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5354225..5355463 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12486.t1.exon1Gvermi12486.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5353343..5354116 -
Gvermi12486.t1.exon2Gvermi12486.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5354225..5355463 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12486.t1.intron1Gvermi12486.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 5354117..5354224 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12486.t1.start1Gvermi12486.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 5355461..5355463 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12486.t1 ID=Gvermi12486.t1|Name=Gvermi12486.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=671bp
MVEENVTADFRTLLPPSETVELLQGSSNSNKKTQATFNEILRFPFLQEIR
AGSLKNDAVKGGTPVLHIVSDGLTYFTSSQITDVNIVRKLSGFAATIPRL
AAVLPRKRLAEVLIGMVTRYAEFANKKSVESKKFYSNFGTAISDTSDAID
ALDGDLDVLRKEIEQLEKSGDDSEFSFFSFIQTSAGAKLLDITRRRIGKY
LTTEVNSEQSLISSLSLVLSVSPDLLTAIFRGSENEPEPDIEKYAELLKD
FQTRLRNVRLLMTALSQNLRNVLRQSVSLMSTWYLILQQLNDLNTTSSPD
EPFAEEEVVVISDAWKSLKKDADEFTASVADVSVTAVTSVLEKNTEVVRR
SLAFTPRSFRAIKSLSPEENEALSKITNDEETLRSLEAMTGTSGKIVATF
NKLLRVPFLDSLHRYQKLQADTVPIARNLYSYATLQQRLIPMLKSSLSIE
NYVKVNLSLIEKRRAEAQRVHAEHNKFQQDWNTAVLLVQRAIAEQEANID
GLKATIEELAKQKKRRTLGAIFTFIGAALFTVAAAFTGGMLFVLCGAAAI
GMVVTGSVLASQAAELQRGIEGYKTALRTAEETLSHFKFVLPIMQEVRDQ
LKSVTLIWNDITNNLTDLSTGTEAWEILAFTLQGDEWDPFMNAALENWKN
IETSVLAYVAQVSDVNPTIE*
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spliced messenger RNA

>Gvermi12486.t1 ID=Gvermi12486.t1|Name=Gvermi12486.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2013bp|location=Sequence derived from alignment at ScGOVlb_3404:5353343..5355463- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGAAGAGAACGTCACTGCCGATTTCCGTACCCTTCTGCCCCCATC
GGAAACTGTTGAGCTTCTGCAAGGCTCTTCAAACTCCAACAAGAAGACTC
AGGCCACTTTCAATGAAATTCTCCGGTTTCCATTTTTGCAAGAGATTCGC
GCTGGATCCTTGAAGAATGATGCCGTCAAGGGTGGCACGCCAGTTCTCCA
CATTGTCTCAGACGGCCTCACTTACTTCACGTCCTCACAGATTACTGACG
TCAATATTGTCCGAAAGCTTTCCGGTTTTGCCGCCACCATACCGCGCCTT
GCTGCTGTTCTCCCGCGCAAACGCCTCGCTGAAGTTCTCATCGGTATGGT
CACCCGCTACGCTGAATTTGCCAATAAGAAATCTGTAGAATCTAAGAAAT
TCTACTCCAACTTTGGTACCGCCATCTCAGACACATCGGACGCAATTGAT
GCCTTAGATGGCGATCTCGATGTGCTCCGAAAAGAAATCGAACAATTAGA
AAAGAGTGGGGATGATTCTGAGTTCAGTTTTTTCTCGTTCATCCAAACCA
GTGCCGGAGCCAAATTGCTTGACATCACCCGTCGTCGTATCGGCAAATAT
CTTACTACGGAAGTCAACTCCGAGCAGTCCTTAATATCGTCTCTGTCCTT
GGTTTTGTCCGTCAGCCCAGACCTGCTGACGGCGATTTTCCGCGGATCCG
AAAACGAGCCCGAGCCCGACATCGAGAAATATGCTGAACTGCTAAAGGAT
TTTCAAACTCGTTTGCGAAACGTGCGCTTGTTAATGACAGCGCTCTCCCA
AAATTTGAGAAATGTGCTCCGTCAGTCCGTCTCACTAATGAGTACATGGT
ATCTCATCCTACAGCAGCTTAACGACCTCAACACGACCAGTTCACCGGAT
GAGCCGTTTGCTGAAGAAGAAGTCGTTGTCATATCCGACGCATGGAAGAG
CCTAAAAAAGGATGCTGATGAGTTCACGGCTTCCGTGGCGGATGTCTCAG
TTACAGCCGTAACCTCTGTACTGGAAAAGAACACTGAGGTTGTCCGGCGT
TCACTTGCTTTTACCCCAAGGTCTTTCAGAGCGATCAAATCTTTATCTCC
CGAAGAGAACGAGGCGTTGTCTAAGATTACGAATGATGAGGAAACATTGC
GATCTCTGGAAGCTATGACGGGCACCAGCGGAAAAATTGTTGCCACATTC
AACAAACTGCTCCGCGTTCCGTTCTTGGACAGTCTACATCGATATCAGAA
GTTACAAGCCGACACAGTTCCAATCGCTCGCAATCTTTATTCGTATGCCA
CGCTTCAACAAAGATTGATTCCAATGCTCAAATCATCGCTTTCGATCGAG
AATTATGTCAAAGTTAACCTTAGTCTGATCGAAAAACGTCGTGCTGAGGC
ACAGCGAGTGCATGCTGAGCATAACAAGTTTCAGCAAGATTGGAACACGG
CTGTTTTGCTAGTCCAGCGTGCAATCGCTGAACAGGAAGCAAATATTGAC
GGACTTAAAGCTACAATAGAAGAACTCGCTAAGCAGAAGAAAAGAAGAAC
TCTCGGTGCCATCTTCACTTTTATTGGAGCTGCTCTGTTTACCGTTGCTG
CAGCCTTCACAGGTGGTATGCTTTTCGTGTTGTGCGGGGCCGCTGCCATC
GGAATGGTTGTGACCGGCAGTGTACTTGCGTCTCAAGCGGCCGAGCTACA
GAGAGGCATTGAAGGGTACAAAACGGCTCTACGAACCGCAGAGGAAACTC
TGTCGCACTTCAAGTTTGTTTTACCGATTATGCAAGAGGTGCGTGATCAG
CTGAAATCCGTGACACTTATATGGAACGATATAACGAACAACCTCACAGA
CTTGAGTACTGGAACTGAAGCTTGGGAAATCCTTGCCTTCACCTTGCAAG
GAGATGAATGGGATCCATTTATGAATGCCGCGTTGGAAAACTGGAAAAAC
ATTGAGACGAGCGTTCTCGCCTATGTCGCCCAAGTCTCGGATGTGAATCC
TACAATCGAGTAG
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protein sequence of Gvermi12486.t1

>Gvermi12486.t1 ID=Gvermi12486.t1|Name=Gvermi12486.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=671bp
MVEENVTADFRTLLPPSETVELLQGSSNSNKKTQATFNEILRFPFLQEIR
AGSLKNDAVKGGTPVLHIVSDGLTYFTSSQITDVNIVRKLSGFAATIPRL
AAVLPRKRLAEVLIGMVTRYAEFANKKSVESKKFYSNFGTAISDTSDAID
ALDGDLDVLRKEIEQLEKSGDDSEFSFFSFIQTSAGAKLLDITRRRIGKY
LTTEVNSEQSLISSLSLVLSVSPDLLTAIFRGSENEPEPDIEKYAELLKD
FQTRLRNVRLLMTALSQNLRNVLRQSVSLMSTWYLILQQLNDLNTTSSPD
EPFAEEEVVVISDAWKSLKKDADEFTASVADVSVTAVTSVLEKNTEVVRR
SLAFTPRSFRAIKSLSPEENEALSKITNDEETLRSLEAMTGTSGKIVATF
NKLLRVPFLDSLHRYQKLQADTVPIARNLYSYATLQQRLIPMLKSSLSIE
NYVKVNLSLIEKRRAEAQRVHAEHNKFQQDWNTAVLLVQRAIAEQEANID
GLKATIEELAKQKKRRTLGAIFTFIGAALFTVAAAFTGGMLFVLCGAAAI
GMVVTGSVLASQAAELQRGIEGYKTALRTAEETLSHFKFVLPIMQEVRDQ
LKSVTLIWNDITNNLTDLSTGTEAWEILAFTLQGDEWDPFMNAALENWKN
IETSVLAYVAQVSDVNPTIE*
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mRNA from alignment at ScGOVlb_3404:5353343..5355463-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12486.t1 ID=Gvermi12486.t1|Name=Gvermi12486.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2121bp|location=Sequence derived from alignment at ScGOVlb_3404:5353343..5355463- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTGAAGAGAACGTCACTGCCGATTTCCGTACCCTTCTGCCCCCATC
GGAAACTGTTGAGCTTCTGCAAGGCTCTTCAAACTCCAACAAGAAGACTC
AGGCCACTTTCAATGAAATTCTCCGGTTTCCATTTTTGCAAGAGATTCGC
GCTGGATCCTTGAAGAATGATGCCGTCAAGGGTGGCACGCCAGTTCTCCA
CATTGTCTCAGACGGCCTCACTTACTTCACGTCCTCACAGATTACTGACG
TCAATATTGTCCGAAAGCTTTCCGGTTTTGCCGCCACCATACCGCGCCTT
GCTGCTGTTCTCCCGCGCAAACGCCTCGCTGAAGTTCTCATCGGTATGGT
CACCCGCTACGCTGAATTTGCCAATAAGAAATCTGTAGAATCTAAGAAAT
TCTACTCCAACTTTGGTACCGCCATCTCAGACACATCGGACGCAATTGAT
GCCTTAGATGGCGATCTCGATGTGCTCCGAAAAGAAATCGAACAATTAGA
AAAGAGTGGGGATGATTCTGAGTTCAGTTTTTTCTCGTTCATCCAAACCA
GTGCCGGAGCCAAATTGCTTGACATCACCCGTCGTCGTATCGGCAAATAT
CTTACTACGGAAGTCAACTCCGAGCAGTCCTTAATATCGTCTCTGTCCTT
GGTTTTGTCCGTCAGCCCAGACCTGCTGACGGCGATTTTCCGCGGATCCG
AAAACGAGCCCGAGCCCGACATCGAGAAATATGCTGAACTGCTAAAGGAT
TTTCAAACTCGTTTGCGAAACGTGCGCTTGTTAATGACAGCGCTCTCCCA
AAATTTGAGAAATGTGCTCCGTCAGTCCGTCTCACTAATGAGTACATGGT
ATCTCATCCTACAGCAGCTTAACGACCTCAACACGACCAGTTCACCGGAT
GAGCCGTTTGCTGAAGAAGAAGTCGTTGTCATATCCGACGCATGGAAGAG
CCTAAAAAAGGATGCTGATGAGTTCACGGCTTCCGTGGCGGATGTCTCAG
TTACAGCCGTAACCTCTGTACTGGAAAAGAACACTGAGGTTGTCCGGCGT
TCACTTGCTTTTACCCCAAGGTCTTTCAGAGCGATCAAATCTTTATCTCC
CGAAGAGAACGAGGCGTTGTCTAAGATTACGAATGATGAGGAAACATTGC
GATCTCTGGAAGCTATGACGGGCACCAGCGGAAAAATTGTTGCCACATTC
AACAAACTGCTCCGCGTTCCGTTCTTGGACAGTCTACATGTAAGTGCAGC
TGCAAACACAGGATCTGAAAAGGATGGATCACAGGAAGAACGCGATGAAG
AAAGCTCGAACATTGACTTGGAAACTCTCACCCTTAATTTCCTACAGCGA
TATCAGAAGTTACAAGCCGACACAGTTCCAATCGCTCGCAATCTTTATTC
GTATGCCACGCTTCAACAAAGATTGATTCCAATGCTCAAATCATCGCTTT
CGATCGAGAATTATGTCAAAGTTAACCTTAGTCTGATCGAAAAACGTCGT
GCTGAGGCACAGCGAGTGCATGCTGAGCATAACAAGTTTCAGCAAGATTG
GAACACGGCTGTTTTGCTAGTCCAGCGTGCAATCGCTGAACAGGAAGCAA
ATATTGACGGACTTAAAGCTACAATAGAAGAACTCGCTAAGCAGAAGAAA
AGAAGAACTCTCGGTGCCATCTTCACTTTTATTGGAGCTGCTCTGTTTAC
CGTTGCTGCAGCCTTCACAGGTGGTATGCTTTTCGTGTTGTGCGGGGCCG
CTGCCATCGGAATGGTTGTGACCGGCAGTGTACTTGCGTCTCAAGCGGCC
GAGCTACAGAGAGGCATTGAAGGGTACAAAACGGCTCTACGAACCGCAGA
GGAAACTCTGTCGCACTTCAAGTTTGTTTTACCGATTATGCAAGAGGTGC
GTGATCAGCTGAAATCCGTGACACTTATATGGAACGATATAACGAACAAC
CTCACAGACTTGAGTACTGGAACTGAAGCTTGGGAAATCCTTGCCTTCAC
CTTGCAAGGAGATGAATGGGATCCATTTATGAATGCCGCGTTGGAAAACT
GGAAAAACATTGAGACGAGCGTTCTCGCCTATGTCGCCCAAGTCTCGGAT
GTGAATCCTACAATCGAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:5353343..5355463-

>Gvermi12486.t1 ID=Gvermi12486.t1|Name=Gvermi12486.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2013bp|location=Sequence derived from alignment at ScGOVlb_3404:5353343..5355463- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTGAAGAGAACGTCACTGCCGATTTCCGTACCCTTCTGCCCCCATC
GGAAACTGTTGAGCTTCTGCAAGGCTCTTCAAACTCCAACAAGAAGACTC
AGGCCACTTTCAATGAAATTCTCCGGTTTCCATTTTTGCAAGAGATTCGC
GCTGGATCCTTGAAGAATGATGCCGTCAAGGGTGGCACGCCAGTTCTCCA
CATTGTCTCAGACGGCCTCACTTACTTCACGTCCTCACAGATTACTGACG
TCAATATTGTCCGAAAGCTTTCCGGTTTTGCCGCCACCATACCGCGCCTT
GCTGCTGTTCTCCCGCGCAAACGCCTCGCTGAAGTTCTCATCGGTATGGT
CACCCGCTACGCTGAATTTGCCAATAAGAAATCTGTAGAATCTAAGAAAT
TCTACTCCAACTTTGGTACCGCCATCTCAGACACATCGGACGCAATTGAT
GCCTTAGATGGCGATCTCGATGTGCTCCGAAAAGAAATCGAACAATTAGA
AAAGAGTGGGGATGATTCTGAGTTCAGTTTTTTCTCGTTCATCCAAACCA
GTGCCGGAGCCAAATTGCTTGACATCACCCGTCGTCGTATCGGCAAATAT
CTTACTACGGAAGTCAACTCCGAGCAGTCCTTAATATCGTCTCTGTCCTT
GGTTTTGTCCGTCAGCCCAGACCTGCTGACGGCGATTTTCCGCGGATCCG
AAAACGAGCCCGAGCCCGACATCGAGAAATATGCTGAACTGCTAAAGGAT
TTTCAAACTCGTTTGCGAAACGTGCGCTTGTTAATGACAGCGCTCTCCCA
AAATTTGAGAAATGTGCTCCGTCAGTCCGTCTCACTAATGAGTACATGGT
ATCTCATCCTACAGCAGCTTAACGACCTCAACACGACCAGTTCACCGGAT
GAGCCGTTTGCTGAAGAAGAAGTCGTTGTCATATCCGACGCATGGAAGAG
CCTAAAAAAGGATGCTGATGAGTTCACGGCTTCCGTGGCGGATGTCTCAG
TTACAGCCGTAACCTCTGTACTGGAAAAGAACACTGAGGTTGTCCGGCGT
TCACTTGCTTTTACCCCAAGGTCTTTCAGAGCGATCAAATCTTTATCTCC
CGAAGAGAACGAGGCGTTGTCTAAGATTACGAATGATGAGGAAACATTGC
GATCTCTGGAAGCTATGACGGGCACCAGCGGAAAAATTGTTGCCACATTC
AACAAACTGCTCCGCGTTCCGTTCTTGGACAGTCTACATCGATATCAGAA
GTTACAAGCCGACACAGTTCCAATCGCTCGCAATCTTTATTCGTATGCCA
CGCTTCAACAAAGATTGATTCCAATGCTCAAATCATCGCTTTCGATCGAG
AATTATGTCAAAGTTAACCTTAGTCTGATCGAAAAACGTCGTGCTGAGGC
ACAGCGAGTGCATGCTGAGCATAACAAGTTTCAGCAAGATTGGAACACGG
CTGTTTTGCTAGTCCAGCGTGCAATCGCTGAACAGGAAGCAAATATTGAC
GGACTTAAAGCTACAATAGAAGAACTCGCTAAGCAGAAGAAAAGAAGAAC
TCTCGGTGCCATCTTCACTTTTATTGGAGCTGCTCTGTTTACCGTTGCTG
CAGCCTTCACAGGTGGTATGCTTTTCGTGTTGTGCGGGGCCGCTGCCATC
GGAATGGTTGTGACCGGCAGTGTACTTGCGTCTCAAGCGGCCGAGCTACA
GAGAGGCATTGAAGGGTACAAAACGGCTCTACGAACCGCAGAGGAAACTC
TGTCGCACTTCAAGTTTGTTTTACCGATTATGCAAGAGGTGCGTGATCAG
CTGAAATCCGTGACACTTATATGGAACGATATAACGAACAACCTCACAGA
CTTGAGTACTGGAACTGAAGCTTGGGAAATCCTTGCCTTCACCTTGCAAG
GAGATGAATGGGATCCATTTATGAATGCCGCGTTGGAAAACTGGAAAAAC
ATTGAGACGAGCGTTCTCGCCTATGTCGCCCAAGTCTCGGATGTGAATCC
TACAATCGAGTAG
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