Gvermi12234.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12234.t1
Unique NameGvermi12234.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3934788..3935560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog326427.Cagg_3166
Preferred namethiE
PFAMsTMP-TENI
Max annot lvl32061|Chloroflexia
KEGG rclassRC00224,RC03255,RC03397
KEGG koko:K00788
KEGG ReactionR03223,R10712
KEGG Pathwayko00730,ko01100,map00730,map01100
KEGG ModuleM00127
GOsGO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue2.53e-47
EggNOG OGsCOG0352@1|root,COG0352@2|Bacteria,2G6P0@200795|Chloroflexi,375RT@32061|Chloroflexia
EC2.5.1.3
DescriptionCondenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP)
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12234Gvermi12234Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3934788..3935560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12234.t1Gvermi12234.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3934788..3935560 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12234.t1.stop1Gvermi12234.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3934788..3934790 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12234.t1.CDS1Gvermi12234.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3934788..3935337 -
Gvermi12234.t1.CDS2Gvermi12234.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3935421..3935560 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12234.t1.exon1Gvermi12234.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3934788..3935337 -
Gvermi12234.t1.exon2Gvermi12234.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3935421..3935560 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12234.t1.intron1Gvermi12234.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3935338..3935420 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12234.t1.start1Gvermi12234.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3935558..3935560 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12234.t1 ID=Gvermi12234.t1|Name=Gvermi12234.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=230bp
MRISRRNFDPSVYLVTDRNTAPGLSVQQVVSQAVATPEKPRQVSVVQLRD
KNISREQSIELGQHLRQITARAGVAFVVNDDIQLAALLRADGVHLGQDDQ
PVYAARQLLGNDAIVGVSAATEQEIDRAIDDGADYVGVGPVFATSSKPDA
GEALGEDQLRRLVLYTDCRVPVVAIGGINVDNAPVCKRAGADGVAVISAI
MSSQQPSLIAQKLAAIMASRDLSTTQQGA*
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spliced messenger RNA

>Gvermi12234.t1 ID=Gvermi12234.t1|Name=Gvermi12234.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=690bp|location=Sequence derived from alignment at ScGOVlb_3404:3934788..3935560- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCATCTCGCGCCGCAACTTCGACCCTTCGGTGTATCTCGTTACCGA
TCGTAACACCGCGCCGGGCCTCAGTGTGCAGCAAGTAGTCTCCCAAGCCG
TAGCCACCCCAGAAAAGCCCCGGCAAGTCTCCGTCGTTCAACTTCGCGAC
AAGAACATTTCTCGCGAGCAGTCAATCGAACTGGGACAGCATCTGCGTCA
AATTACAGCGCGTGCGGGAGTTGCCTTCGTCGTCAACGACGACATTCAAC
TCGCCGCGCTATTGCGCGCAGACGGCGTTCATCTGGGCCAAGACGACCAG
CCCGTTTATGCGGCAAGGCAGTTATTGGGCAATGATGCCATCGTCGGTGT
CTCTGCAGCCACTGAGCAAGAAATAGACAGGGCGATAGATGACGGCGCAG
ACTATGTCGGTGTCGGGCCGGTCTTCGCCACGTCTTCCAAACCTGATGCT
GGGGAGGCTCTCGGCGAGGATCAACTACGCCGCCTTGTGCTCTACACCGA
CTGTAGAGTGCCTGTGGTTGCAATCGGCGGCATCAATGTAGATAATGCAC
CGGTTTGCAAACGTGCTGGTGCGGATGGCGTCGCGGTCATTTCGGCCATC
ATGTCGAGCCAGCAGCCATCTCTCATTGCCCAGAAGCTGGCTGCGATCAT
GGCAAGTCGCGACCTTTCAACCACACAGCAAGGCGCCTGA
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protein sequence of Gvermi12234.t1

>Gvermi12234.t1 ID=Gvermi12234.t1|Name=Gvermi12234.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=230bp
MRISRRNFDPSVYLVTDRNTAPGLSVQQVVSQAVATPEKPRQVSVVQLRD
KNISREQSIELGQHLRQITARAGVAFVVNDDIQLAALLRADGVHLGQDDQ
PVYAARQLLGNDAIVGVSAATEQEIDRAIDDGADYVGVGPVFATSSKPDA
GEALGEDQLRRLVLYTDCRVPVVAIGGINVDNAPVCKRAGADGVAVISAI
MSSQQPSLIAQKLAAIMASRDLSTTQQGA*
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mRNA from alignment at ScGOVlb_3404:3934788..3935560-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12234.t1 ID=Gvermi12234.t1|Name=Gvermi12234.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=773bp|location=Sequence derived from alignment at ScGOVlb_3404:3934788..3935560- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCATCTCGCGCCGCAACTTCGACCCTTCGGTGTATCTCGTTACCGA
TCGTAACACCGCGCCGGGCCTCAGTGTGCAGCAAGTAGTCTCCCAAGCCG
TAGCCACCCCAGAAAAGCCCCGGCAAGTCTCCGTCGTTCAGTACGTAAGA
TGCATTATTTTACGCAGCTCTCGGACGCAGTTGCCGCCCCTTGTGCCCGC
AGCCCGTGCTGACCGAGTCCAAGACTTCGCGACAAGAACATTTCTCGCGA
GCAGTCAATCGAACTGGGACAGCATCTGCGTCAAATTACAGCGCGTGCGG
GAGTTGCCTTCGTCGTCAACGACGACATTCAACTCGCCGCGCTATTGCGC
GCAGACGGCGTTCATCTGGGCCAAGACGACCAGCCCGTTTATGCGGCAAG
GCAGTTATTGGGCAATGATGCCATCGTCGGTGTCTCTGCAGCCACTGAGC
AAGAAATAGACAGGGCGATAGATGACGGCGCAGACTATGTCGGTGTCGGG
CCGGTCTTCGCCACGTCTTCCAAACCTGATGCTGGGGAGGCTCTCGGCGA
GGATCAACTACGCCGCCTTGTGCTCTACACCGACTGTAGAGTGCCTGTGG
TTGCAATCGGCGGCATCAATGTAGATAATGCACCGGTTTGCAAACGTGCT
GGTGCGGATGGCGTCGCGGTCATTTCGGCCATCATGTCGAGCCAGCAGCC
ATCTCTCATTGCCCAGAAGCTGGCTGCGATCATGGCAAGTCGCGACCTTT
CAACCACACAGCAAGGCGCCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3934788..3935560-

>Gvermi12234.t1 ID=Gvermi12234.t1|Name=Gvermi12234.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=690bp|location=Sequence derived from alignment at ScGOVlb_3404:3934788..3935560- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCATCTCGCGCCGCAACTTCGACCCTTCGGTGTATCTCGTTACCGA
TCGTAACACCGCGCCGGGCCTCAGTGTGCAGCAAGTAGTCTCCCAAGCCG
TAGCCACCCCAGAAAAGCCCCGGCAAGTCTCCGTCGTTCAACTTCGCGAC
AAGAACATTTCTCGCGAGCAGTCAATCGAACTGGGACAGCATCTGCGTCA
AATTACAGCGCGTGCGGGAGTTGCCTTCGTCGTCAACGACGACATTCAAC
TCGCCGCGCTATTGCGCGCAGACGGCGTTCATCTGGGCCAAGACGACCAG
CCCGTTTATGCGGCAAGGCAGTTATTGGGCAATGATGCCATCGTCGGTGT
CTCTGCAGCCACTGAGCAAGAAATAGACAGGGCGATAGATGACGGCGCAG
ACTATGTCGGTGTCGGGCCGGTCTTCGCCACGTCTTCCAAACCTGATGCT
GGGGAGGCTCTCGGCGAGGATCAACTACGCCGCCTTGTGCTCTACACCGA
CTGTAGAGTGCCTGTGGTTGCAATCGGCGGCATCAATGTAGATAATGCAC
CGGTTTGCAAACGTGCTGGTGCGGATGGCGTCGCGGTCATTTCGGCCATC
ATGTCGAGCCAGCAGCCATCTCTCATTGCCCAGAAGCTGGCTGCGATCAT
GGCAAGTCGCGACCTTTCAACCACACAGCAAGGCGCCTGA
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