Gvermi12425.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12425.t1
Unique NameGvermi12425.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length608
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4685193..4687110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4529.ORUFI02G33410.1
PFAMsNicastrin
Max annot lvl35493|Streptophyta
KEGG koko:K06171
KEGG Pathwayko04330,ko05010,map04330,map05010
KEGG ModuleM00682
GOsGO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0010467,GO:0016020,GO:0016021,GO:0016485,GO:0016787,GO:0019538,GO:0031224,GO:0031226,GO:0043170,GO:0044238,GO:0044425,GO:0044459,GO:0044464,GO:0051604,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564
Evalue1.29e-18
EggNOG OGsKOG2657@1|root,KOG2657@2759|Eukaryota,37MBS@33090|Viridiplantae,3G7N9@35493|Streptophyta,3KP3H@4447|Liliopsida,3I5HF@38820|Poales
DescriptionNicastrin
COG categoryOT
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12425Gvermi12425Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4684729..4687110 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12425.t1Gvermi12425.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4685193..4687110 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12425.t1.stop1Gvermi12425.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4685193..4685195 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12425.t1.CDS1Gvermi12425.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4685193..4685212 -
Gvermi12425.t1.CDS2Gvermi12425.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4685307..4687110 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12425.t1.exon1Gvermi12425.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4685193..4685212 -
Gvermi12425.t1.exon2Gvermi12425.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4685307..4687110 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12425.t1.intron1Gvermi12425.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4685213..4685306 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12425.t1.start1Gvermi12425.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4687108..4687110 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12425.t1 ID=Gvermi12425.t1|Name=Gvermi12425.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=608bp
MQPTLRLLASSAIALYLALLLAAFPIATALSLPKLGRFRRKCYTSLPMCI
MQSNNVSSRGCGQCDTDVREAPLREVRTESELTQVRLQGGRAIILIPERV
FFSKKVRSSISFWTNIDALIVYGGPPKRPNEFVDNGAANQTIDLLFNYSL
DETEPNRLYNFYPDGVGSDNRCDGNIPRRNNPGDCTFQQFIPFNIFYINA
SLSDQILRSAARFGDPNFVPDGNERGAFSPQFKLQSTGRMWACATTMTPT
PTTTISIDNTVSGQNAGSAVTSEQCLRDKTCLPIGGHSLWSALGRVNSRV
PAAQRKYLFITAPMDSFAFFPEFGMGAGAEIASLAVLMAVADRVAIYWRE
QHDEGDFERQPVYFALNAQSWGYAGSSRFLRDMLEFECTNEADFAKGERG
CTEPSIDNLKFKDFKDADIQVLNLGQLITPATTMDGPSDPQFFIHHEDGT
SNTLGDEFKKSFGQFDLNLERGGFDYESNVPLTPIDATQSFKFFNGSKDM
DVVSISNYAVNFSTEIYHSSLDTELRISHDGQRIPMYRAAHAIASAVIGI
AFGVEGRWEVNTTIVDNVITCMTGNWTDCSMAQDYLGKESENATVQPGNY
PDLMKAQ*
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spliced messenger RNA

>Gvermi12425.t1 ID=Gvermi12425.t1|Name=Gvermi12425.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1824bp|location=Sequence derived from alignment at ScGOVlb_3404:4685193..4687110- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCTACCCTGCGCCTGTTGGCGTCTTCCGCCATTGCCTTGTATCT
CGCGCTCCTCCTCGCCGCCTTCCCCATCGCCACCGCACTCTCGCTCCCAA
AGCTCGGGCGCTTCCGTCGCAAGTGCTACACAAGCCTGCCCATGTGCATC
ATGCAGAGCAATAACGTTTCTTCGCGCGGCTGCGGTCAGTGCGACACAGA
CGTGCGCGAGGCTCCGCTGCGCGAGGTGCGAACCGAGTCAGAGCTCACCC
AGGTCAGGCTGCAGGGAGGCCGAGCCATAATTCTCATTCCCGAGCGCGTC
TTCTTTTCGAAGAAAGTCAGGTCAAGCATTAGTTTCTGGACCAACATTGA
CGCTCTCATTGTGTACGGGGGGCCTCCTAAACGCCCGAACGAATTCGTTG
ACAATGGCGCCGCCAACCAAACAATAGATCTACTCTTCAACTATTCGCTT
GATGAAACTGAACCCAACCGCCTGTACAACTTCTACCCGGATGGCGTCGG
CTCGGACAACCGTTGCGACGGCAACATTCCACGTCGCAACAACCCGGGCG
ATTGCACCTTTCAGCAGTTCATTCCTTTCAACATTTTTTATATCAATGCT
TCGCTGTCCGACCAAATTCTCCGTTCAGCTGCGCGATTTGGTGACCCCAA
CTTCGTTCCCGATGGAAATGAGAGAGGCGCCTTTTCCCCGCAGTTTAAAC
TTCAATCCACTGGTAGAATGTGGGCGTGCGCAACCACAATGACCCCAACC
CCTACCACAACAATATCAATCGACAACACTGTCAGTGGCCAGAACGCGGG
CTCTGCAGTAACCTCAGAGCAATGTCTGCGAGATAAGACTTGTCTCCCCA
TCGGTGGACATTCTTTGTGGTCTGCACTGGGTCGAGTCAACTCCAGAGTT
CCTGCAGCGCAGCGCAAGTATTTGTTTATCACAGCTCCAATGGACTCTTT
TGCGTTTTTCCCGGAGTTTGGAATGGGTGCCGGAGCCGAAATAGCCTCAT
TGGCTGTATTGATGGCTGTTGCAGATCGGGTGGCTATTTACTGGCGTGAA
CAACACGATGAGGGCGATTTTGAACGCCAACCGGTCTACTTTGCGCTAAA
TGCACAATCATGGGGGTACGCGGGCTCCTCAAGGTTTTTGCGAGATATGC
TAGAGTTTGAGTGTACGAATGAAGCCGATTTTGCCAAAGGTGAAAGAGGA
TGCACCGAGCCTTCCATTGACAATCTCAAGTTCAAGGATTTTAAAGACGC
TGATATTCAAGTTCTCAATCTCGGTCAATTGATAACGCCTGCCACAACTA
TGGATGGCCCCTCGGATCCACAGTTCTTCATTCATCATGAGGACGGGACA
AGTAATACGCTCGGAGATGAGTTCAAGAAGTCTTTTGGTCAATTTGACCT
TAACCTCGAGCGCGGCGGATTTGATTATGAGTCCAACGTACCACTGACTC
CAATTGATGCTACCCAAAGTTTCAAGTTCTTCAATGGAAGCAAGGACATG
GATGTTGTGAGTATCAGCAATTATGCTGTCAATTTTAGCACGGAAATCTA
TCATTCATCGTTGGACACCGAACTTCGAATAAGTCACGATGGCCAGCGAA
TACCAATGTACAGGGCTGCACATGCCATCGCATCAGCTGTGATTGGCATT
GCGTTTGGAGTAGAGGGACGGTGGGAAGTCAACACGACCATTGTTGACAA
CGTCATTACGTGCATGACAGGGAATTGGACCGACTGCTCTATGGCGCAGG
ACTACCTGGGGAAGGAGTCTGAAAACGCGACGGTTCAGCCTGGAAACTAT
CCTGATTTAATGAAAGCACAGTGA
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protein sequence of Gvermi12425.t1

>Gvermi12425.t1 ID=Gvermi12425.t1|Name=Gvermi12425.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=608bp
MQPTLRLLASSAIALYLALLLAAFPIATALSLPKLGRFRRKCYTSLPMCI
MQSNNVSSRGCGQCDTDVREAPLREVRTESELTQVRLQGGRAIILIPERV
FFSKKVRSSISFWTNIDALIVYGGPPKRPNEFVDNGAANQTIDLLFNYSL
DETEPNRLYNFYPDGVGSDNRCDGNIPRRNNPGDCTFQQFIPFNIFYINA
SLSDQILRSAARFGDPNFVPDGNERGAFSPQFKLQSTGRMWACATTMTPT
PTTTISIDNTVSGQNAGSAVTSEQCLRDKTCLPIGGHSLWSALGRVNSRV
PAAQRKYLFITAPMDSFAFFPEFGMGAGAEIASLAVLMAVADRVAIYWRE
QHDEGDFERQPVYFALNAQSWGYAGSSRFLRDMLEFECTNEADFAKGERG
CTEPSIDNLKFKDFKDADIQVLNLGQLITPATTMDGPSDPQFFIHHEDGT
SNTLGDEFKKSFGQFDLNLERGGFDYESNVPLTPIDATQSFKFFNGSKDM
DVVSISNYAVNFSTEIYHSSLDTELRISHDGQRIPMYRAAHAIASAVIGI
AFGVEGRWEVNTTIVDNVITCMTGNWTDCSMAQDYLGKESENATVQPGNY
PDLMKAQ*
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mRNA from alignment at ScGOVlb_3404:4685193..4687110-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12425.t1 ID=Gvermi12425.t1|Name=Gvermi12425.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1918bp|location=Sequence derived from alignment at ScGOVlb_3404:4685193..4687110- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCCTACCCTGCGCCTGTTGGCGTCTTCCGCCATTGCCTTGTATCT
CGCGCTCCTCCTCGCCGCCTTCCCCATCGCCACCGCACTCTCGCTCCCAA
AGCTCGGGCGCTTCCGTCGCAAGTGCTACACAAGCCTGCCCATGTGCATC
ATGCAGAGCAATAACGTTTCTTCGCGCGGCTGCGGTCAGTGCGACACAGA
CGTGCGCGAGGCTCCGCTGCGCGAGGTGCGAACCGAGTCAGAGCTCACCC
AGGTCAGGCTGCAGGGAGGCCGAGCCATAATTCTCATTCCCGAGCGCGTC
TTCTTTTCGAAGAAAGTCAGGTCAAGCATTAGTTTCTGGACCAACATTGA
CGCTCTCATTGTGTACGGGGGGCCTCCTAAACGCCCGAACGAATTCGTTG
ACAATGGCGCCGCCAACCAAACAATAGATCTACTCTTCAACTATTCGCTT
GATGAAACTGAACCCAACCGCCTGTACAACTTCTACCCGGATGGCGTCGG
CTCGGACAACCGTTGCGACGGCAACATTCCACGTCGCAACAACCCGGGCG
ATTGCACCTTTCAGCAGTTCATTCCTTTCAACATTTTTTATATCAATGCT
TCGCTGTCCGACCAAATTCTCCGTTCAGCTGCGCGATTTGGTGACCCCAA
CTTCGTTCCCGATGGAAATGAGAGAGGCGCCTTTTCCCCGCAGTTTAAAC
TTCAATCCACTGGTAGAATGTGGGCGTGCGCAACCACAATGACCCCAACC
CCTACCACAACAATATCAATCGACAACACTGTCAGTGGCCAGAACGCGGG
CTCTGCAGTAACCTCAGAGCAATGTCTGCGAGATAAGACTTGTCTCCCCA
TCGGTGGACATTCTTTGTGGTCTGCACTGGGTCGAGTCAACTCCAGAGTT
CCTGCAGCGCAGCGCAAGTATTTGTTTATCACAGCTCCAATGGACTCTTT
TGCGTTTTTCCCGGAGTTTGGAATGGGTGCCGGAGCCGAAATAGCCTCAT
TGGCTGTATTGATGGCTGTTGCAGATCGGGTGGCTATTTACTGGCGTGAA
CAACACGATGAGGGCGATTTTGAACGCCAACCGGTCTACTTTGCGCTAAA
TGCACAATCATGGGGGTACGCGGGCTCCTCAAGGTTTTTGCGAGATATGC
TAGAGTTTGAGTGTACGAATGAAGCCGATTTTGCCAAAGGTGAAAGAGGA
TGCACCGAGCCTTCCATTGACAATCTCAAGTTCAAGGATTTTAAAGACGC
TGATATTCAAGTTCTCAATCTCGGTCAATTGATAACGCCTGCCACAACTA
TGGATGGCCCCTCGGATCCACAGTTCTTCATTCATCATGAGGACGGGACA
AGTAATACGCTCGGAGATGAGTTCAAGAAGTCTTTTGGTCAATTTGACCT
TAACCTCGAGCGCGGCGGATTTGATTATGAGTCCAACGTACCACTGACTC
CAATTGATGCTACCCAAAGTTTCAAGTTCTTCAATGGAAGCAAGGACATG
GATGTTGTGAGTATCAGCAATTATGCTGTCAATTTTAGCACGGAAATCTA
TCATTCATCGTTGGACACCGAACTTCGAATAAGTCACGATGGCCAGCGAA
TACCAATGTACAGGGCTGCACATGCCATCGCATCAGCTGTGATTGGCATT
GCGTTTGGAGTAGAGGGACGGTGGGAAGTCAACACGACCATTGTTGACAA
CGTCATTACGTGCATGACAGGGAATTGGACCGACTGCTCTATGGCGCAGG
ACTACCTGGGGAAGGAGTCTGAAAACGCGACGGTTCAGCCTGGAAACTAT
CCTGGTCCTTTCTTTCCGATCAGCGTGCTTAAGGATCACAAACCCAGCGG
TGCTGCCAAGTTGGCGCTGATTCGAGCATTTTTCGCTCACCACGATAGAT
TTAATGAAAGCACAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4685193..4687110-

>Gvermi12425.t1 ID=Gvermi12425.t1|Name=Gvermi12425.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1824bp|location=Sequence derived from alignment at ScGOVlb_3404:4685193..4687110- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCCTACCCTGCGCCTGTTGGCGTCTTCCGCCATTGCCTTGTATCT
CGCGCTCCTCCTCGCCGCCTTCCCCATCGCCACCGCACTCTCGCTCCCAA
AGCTCGGGCGCTTCCGTCGCAAGTGCTACACAAGCCTGCCCATGTGCATC
ATGCAGAGCAATAACGTTTCTTCGCGCGGCTGCGGTCAGTGCGACACAGA
CGTGCGCGAGGCTCCGCTGCGCGAGGTGCGAACCGAGTCAGAGCTCACCC
AGGTCAGGCTGCAGGGAGGCCGAGCCATAATTCTCATTCCCGAGCGCGTC
TTCTTTTCGAAGAAAGTCAGGTCAAGCATTAGTTTCTGGACCAACATTGA
CGCTCTCATTGTGTACGGGGGGCCTCCTAAACGCCCGAACGAATTCGTTG
ACAATGGCGCCGCCAACCAAACAATAGATCTACTCTTCAACTATTCGCTT
GATGAAACTGAACCCAACCGCCTGTACAACTTCTACCCGGATGGCGTCGG
CTCGGACAACCGTTGCGACGGCAACATTCCACGTCGCAACAACCCGGGCG
ATTGCACCTTTCAGCAGTTCATTCCTTTCAACATTTTTTATATCAATGCT
TCGCTGTCCGACCAAATTCTCCGTTCAGCTGCGCGATTTGGTGACCCCAA
CTTCGTTCCCGATGGAAATGAGAGAGGCGCCTTTTCCCCGCAGTTTAAAC
TTCAATCCACTGGTAGAATGTGGGCGTGCGCAACCACAATGACCCCAACC
CCTACCACAACAATATCAATCGACAACACTGTCAGTGGCCAGAACGCGGG
CTCTGCAGTAACCTCAGAGCAATGTCTGCGAGATAAGACTTGTCTCCCCA
TCGGTGGACATTCTTTGTGGTCTGCACTGGGTCGAGTCAACTCCAGAGTT
CCTGCAGCGCAGCGCAAGTATTTGTTTATCACAGCTCCAATGGACTCTTT
TGCGTTTTTCCCGGAGTTTGGAATGGGTGCCGGAGCCGAAATAGCCTCAT
TGGCTGTATTGATGGCTGTTGCAGATCGGGTGGCTATTTACTGGCGTGAA
CAACACGATGAGGGCGATTTTGAACGCCAACCGGTCTACTTTGCGCTAAA
TGCACAATCATGGGGGTACGCGGGCTCCTCAAGGTTTTTGCGAGATATGC
TAGAGTTTGAGTGTACGAATGAAGCCGATTTTGCCAAAGGTGAAAGAGGA
TGCACCGAGCCTTCCATTGACAATCTCAAGTTCAAGGATTTTAAAGACGC
TGATATTCAAGTTCTCAATCTCGGTCAATTGATAACGCCTGCCACAACTA
TGGATGGCCCCTCGGATCCACAGTTCTTCATTCATCATGAGGACGGGACA
AGTAATACGCTCGGAGATGAGTTCAAGAAGTCTTTTGGTCAATTTGACCT
TAACCTCGAGCGCGGCGGATTTGATTATGAGTCCAACGTACCACTGACTC
CAATTGATGCTACCCAAAGTTTCAAGTTCTTCAATGGAAGCAAGGACATG
GATGTTGTGAGTATCAGCAATTATGCTGTCAATTTTAGCACGGAAATCTA
TCATTCATCGTTGGACACCGAACTTCGAATAAGTCACGATGGCCAGCGAA
TACCAATGTACAGGGCTGCACATGCCATCGCATCAGCTGTGATTGGCATT
GCGTTTGGAGTAGAGGGACGGTGGGAAGTCAACACGACCATTGTTGACAA
CGTCATTACGTGCATGACAGGGAATTGGACCGACTGCTCTATGGCGCAGG
ACTACCTGGGGAAGGAGTCTGAAAACGCGACGGTTCAGCCTGGAAACTAT
CCTGATTTAATGAAAGCACAGTGA
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