Gvermi12402.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12402.t1
Unique NameGvermi12402.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length344
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4566504..4567660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45351.EDO41804
Preferred nameGRHPR
PFAMs2-Hacid_dh,2-Hacid_dh_C
Max annot lvl33208|Metazoa
KEGG rclassRC00031,RC00042,RC00202,RC00578,RC00670
KEGG koko:K00049,ko:K13403
KEGG ReactionR00465,R01218,R01388,R01392,R01655,R02527
KEGG Pathwayko00260,ko00620,ko00630,ko00670,ko01100,ko01110,ko01120,map00260,map00620,map00630,map00670,map01100,map01110,map01120
KEGG ModuleM00141
GOsGO:0000166,GO:0003008,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005782,GO:0005829,GO:0006081,GO:0006082,GO:0006807,GO:0007588,GO:0008150,GO:0008152,GO:0008465,GO:0009987,GO:0016043,GO:0016491,GO:0016614,GO:0016616,GO:0016618,GO:0019752,GO:0022607,GO:0030267,GO:0031406,GO:0031907,GO:0031974,GO:0032501,GO:0032787,GO:0034641,GO:0036094,GO:0042579,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043648,GO:0043933,GO:0044085,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0046487,GO:0046983,GO:0048037,GO:0050661,GO:0050662,GO:0051259,GO:0051287,GO:0055114,GO:0065003,GO:0070013,GO:0070402,GO:0071704,GO:0071840,GO:0097159,GO:1901265,GO:1901363
Evalue2.22e-110
EggNOG OGsCOG1052@1|root,KOG0069@2759|Eukaryota,38CKW@33154|Opisthokonta,3BDXZ@33208|Metazoa
EC1.1.1.79,1.1.1.81,1.5.1.15,3.5.4.9
Descriptionglycerate dehydrogenase activity
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12402Gvermi12402Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4566504..4567660 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12402.t1Gvermi12402.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4566504..4567660 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12402.t1.start1Gvermi12402.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4566504..4566506 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12402.t1.CDS1Gvermi12402.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4566504..4567482 +
Gvermi12402.t1.CDS2Gvermi12402.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4567608..4567660 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12402.t1.exon1Gvermi12402.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4566504..4567482 +
Gvermi12402.t1.exon2Gvermi12402.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4567608..4567660 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12402.t1.intron1Gvermi12402.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4567483..4567607 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12402.t1.stop1Gvermi12402.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4567658..4567660 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12402.t1 ID=Gvermi12402.t1|Name=Gvermi12402.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=344bp
MGSNDTWRVLVTRRVPARAIEMLRDAKLDLDIWDSDDPMPHDQLVSKAAE
GCDAIYCVLSDKISADVLDAGGERLKIVATMSVGYNHVDIPECAKRGIKV
SHTPNVLTETTADTAVGLVLAACRRFKEATASVVDGTWGTWTPMGMCGQD
VHDSTVGIIGMGRIGSAVARRLHAFNCNILYWDISHVKHVEESLGAKFAD
MDDLLSQSDIIVTLCPLNEHTTHMFNMDKFKKMKKSAVFINPARGELVNQ
DDLVAALQQGVIFSAGLDVTTPEPIPKDHPLVKLPNCFILPHIGSASMGT
RTEMAVLTSKNILAAYNGKPLPSGVREVVGTELRKSVPNAIRV*
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spliced messenger RNA

>Gvermi12402.t1 ID=Gvermi12402.t1|Name=Gvermi12402.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at ScGOVlb_3404:4566504..4567660+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGATCTAACGATACCTGGCGCGTACTAGTTACGCGACGCGTTCCTGC
TCGTGCAATTGAAATGCTTCGAGACGCAAAGCTCGATCTGGATATCTGGG
ATTCCGACGACCCCATGCCGCATGACCAACTCGTCAGCAAGGCGGCAGAG
GGCTGTGACGCAATCTACTGCGTTCTCTCCGACAAGATTAGCGCCGATGT
GCTGGATGCCGGCGGTGAACGTCTCAAGATCGTGGCCACCATGAGCGTGG
GATACAACCACGTGGACATTCCAGAGTGCGCCAAGCGCGGCATCAAGGTG
TCTCACACGCCCAACGTGCTCACCGAAACCACTGCTGATACCGCTGTTGG
TCTTGTTCTCGCCGCATGTAGACGCTTCAAAGAGGCCACGGCCTCTGTCG
TCGACGGCACATGGGGAACATGGACGCCTATGGGCATGTGCGGTCAGGAC
GTTCACGACTCAACCGTCGGTATAATCGGCATGGGACGCATTGGCTCTGC
CGTTGCACGAAGATTGCACGCCTTCAACTGTAACATTCTGTACTGGGACA
TTTCCCACGTGAAACACGTCGAAGAGAGCCTGGGAGCCAAATTCGCCGAC
ATGGACGACTTGCTTTCTCAGTCTGACATCATTGTTACTCTATGTCCGCT
CAACGAGCACACGACACACATGTTCAACATGGACAAGTTCAAGAAAATGA
AGAAGTCGGCCGTGTTCATTAATCCTGCCAGAGGCGAGTTGGTGAACCAG
GACGACCTTGTCGCCGCGCTTCAACAAGGCGTGATTTTCTCGGCAGGTTT
GGATGTCACCACACCGGAACCGATCCCAAAGGATCATCCGCTTGTTAAGC
TGCCCAACTGCTTCATTTTGCCGCACATTGGCAGTGCCTCCATGGGAACA
AGAACCGAAATGGCAGTCTTGACGTCCAAGAATATTTTGGCCGCGTACAA
CGGAAAACCACTCCCAAGCGGCGTTAGAGAGGTCGTCGGCACCGAACTTA
GGAAGAGCGTTCCAAATGCCATCCGCGTGTAA
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protein sequence of Gvermi12402.t1

>Gvermi12402.t1 ID=Gvermi12402.t1|Name=Gvermi12402.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=344bp
MGSNDTWRVLVTRRVPARAIEMLRDAKLDLDIWDSDDPMPHDQLVSKAAE
GCDAIYCVLSDKISADVLDAGGERLKIVATMSVGYNHVDIPECAKRGIKV
SHTPNVLTETTADTAVGLVLAACRRFKEATASVVDGTWGTWTPMGMCGQD
VHDSTVGIIGMGRIGSAVARRLHAFNCNILYWDISHVKHVEESLGAKFAD
MDDLLSQSDIIVTLCPLNEHTTHMFNMDKFKKMKKSAVFINPARGELVNQ
DDLVAALQQGVIFSAGLDVTTPEPIPKDHPLVKLPNCFILPHIGSASMGT
RTEMAVLTSKNILAAYNGKPLPSGVREVVGTELRKSVPNAIRV*
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mRNA from alignment at ScGOVlb_3404:4566504..4567660+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12402.t1 ID=Gvermi12402.t1|Name=Gvermi12402.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1157bp|location=Sequence derived from alignment at ScGOVlb_3404:4566504..4567660+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGATCTAACGATACCTGGCGCGTACTAGTTACGCGACGCGTTCCTGC
TCGTGCAATTGAAATGCTTCGAGACGCAAAGCTCGATCTGGATATCTGGG
ATTCCGACGACCCCATGCCGCATGACCAACTCGTCAGCAAGGCGGCAGAG
GGCTGTGACGCAATCTACTGCGTTCTCTCCGACAAGATTAGCGCCGATGT
GCTGGATGCCGGCGGTGAACGTCTCAAGATCGTGGCCACCATGAGCGTGG
GATACAACCACGTGGACATTCCAGAGTGCGCCAAGCGCGGCATCAAGGTG
TCTCACACGCCCAACGTGCTCACCGAAACCACTGCTGATACCGCTGTTGG
TCTTGTTCTCGCCGCATGTAGACGCTTCAAAGAGGCCACGGCCTCTGTCG
TCGACGGCACATGGGGAACATGGACGCCTATGGGCATGTGCGGTCAGGAC
GTTCACGACTCAACCGTCGGTATAATCGGCATGGGACGCATTGGCTCTGC
CGTTGCACGAAGATTGCACGCCTTCAACTGTAACATTCTGTACTGGGACA
TTTCCCACGTGAAACACGTCGAAGAGAGCCTGGGAGCCAAATTCGCCGAC
ATGGACGACTTGCTTTCTCAGTCTGACATCATTGTTACTCTATGTCCGCT
CAACGAGCACACGACACACATGTTCAACATGGACAAGTTCAAGAAAATGA
AGAAGTCGGCCGTGTTCATTAATCCTGCCAGAGGCGAGTTGGTGAACCAG
GACGACCTTGTCGCCGCGCTTCAACAAGGCGTGATTTTCTCGGCAGGTTT
GGATGTCACCACACCGGAACCGATCCCAAAGGATCATCCGCTTGTTAAGC
TGCCCAACTGCTTCATTTTGCCGCACATTGGCAGTGCCTCCATGGGAACA
AGAACCGAAATGGCAGTCTTGACGTCCAAGAATATTTTGGCCGCGTACAA
CGGAAAACCACTCCCAAGCGGCGTTAGAGGTATGTAACTTGCGCTTACTT
GAGAAATATATACTCGTCGTAAACGCTTCGGTACATAATAAAAGATGTTT
TTCTCAGTGCTGTTCATCTTTTCTTCTGTGCCTGGCTCTCCGCAATCCTT
TCAGAGGTCGTCGGCACCGAACTTAGGAAGAGCGTTCCAAATGCCATCCG
CGTGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4566504..4567660+

>Gvermi12402.t1 ID=Gvermi12402.t1|Name=Gvermi12402.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1032bp|location=Sequence derived from alignment at ScGOVlb_3404:4566504..4567660+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGATCTAACGATACCTGGCGCGTACTAGTTACGCGACGCGTTCCTGC
TCGTGCAATTGAAATGCTTCGAGACGCAAAGCTCGATCTGGATATCTGGG
ATTCCGACGACCCCATGCCGCATGACCAACTCGTCAGCAAGGCGGCAGAG
GGCTGTGACGCAATCTACTGCGTTCTCTCCGACAAGATTAGCGCCGATGT
GCTGGATGCCGGCGGTGAACGTCTCAAGATCGTGGCCACCATGAGCGTGG
GATACAACCACGTGGACATTCCAGAGTGCGCCAAGCGCGGCATCAAGGTG
TCTCACACGCCCAACGTGCTCACCGAAACCACTGCTGATACCGCTGTTGG
TCTTGTTCTCGCCGCATGTAGACGCTTCAAAGAGGCCACGGCCTCTGTCG
TCGACGGCACATGGGGAACATGGACGCCTATGGGCATGTGCGGTCAGGAC
GTTCACGACTCAACCGTCGGTATAATCGGCATGGGACGCATTGGCTCTGC
CGTTGCACGAAGATTGCACGCCTTCAACTGTAACATTCTGTACTGGGACA
TTTCCCACGTGAAACACGTCGAAGAGAGCCTGGGAGCCAAATTCGCCGAC
ATGGACGACTTGCTTTCTCAGTCTGACATCATTGTTACTCTATGTCCGCT
CAACGAGCACACGACACACATGTTCAACATGGACAAGTTCAAGAAAATGA
AGAAGTCGGCCGTGTTCATTAATCCTGCCAGAGGCGAGTTGGTGAACCAG
GACGACCTTGTCGCCGCGCTTCAACAAGGCGTGATTTTCTCGGCAGGTTT
GGATGTCACCACACCGGAACCGATCCCAAAGGATCATCCGCTTGTTAAGC
TGCCCAACTGCTTCATTTTGCCGCACATTGGCAGTGCCTCCATGGGAACA
AGAACCGAAATGGCAGTCTTGACGTCCAAGAATATTTTGGCCGCGTACAA
CGGAAAACCACTCCCAAGCGGCGTTAGAGAGGTCGTCGGCACCGAACTTA
GGAAGAGCGTTCCAAATGCCATCCGCGTGTAA
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