Gvermi11531.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi11531.t1
Unique Name	Gvermi11531.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	443

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:747199..748527 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705544.1
Preferred name	MIR1
PFAMs	Mito_carr
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15102
KEGG TC	2.A.29.4
GOs	GO:0003674,GO:0005215,GO:0005315,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0006839,GO:0008150,GO:0015291,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031975,GO:0032592,GO:0034220,GO:0035435,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0098573,GO:0098656,GO:0098660,GO:0098661
Evalue	4.95e-68
EggNOG OGs	KOG0767@1\|root,KOG0767@2759\|Eukaryota
Description	phosphate ion transmembrane transport
COG category	U
BiGG Reaction	iMM904.YJR077C,iND750.YJR077C
BRITE	ko00000,ko02000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi11531	Gvermi11531	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 747199..748527 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11531.t1.start1	Gvermi11531.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 747199..747201 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11531.t1.CDS1	Gvermi11531.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 747199..748527 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11531.t1.exon1	Gvermi11531.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 747199..748527 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11531.t1.stop1	Gvermi11531.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 748525..748527 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11531.t1	Gvermi11531.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 747199..748527 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:747199..748527+
coding sequence from alignment at ScGOVlb_3404:747199..748527+

mRNA sequence

>Gvermi11531.t1 ID=Gvermi11531.t1|Name=Gvermi11531.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=443bp
MGAERRVIAARVLFAESQPQRNMAVHGLLAARLPPPLGSPAAAAAATVAA
AAMLPALAAALPLSAAAETPRPLDLLLVCSVFLLMASLVKSLSLVPAANF
PHVDRLVAFLCLLTMSSFFFRRLALLAADGHITPTRFLQFFIAGGICAFL
THAACTPIDVVKTRIQTMPGRYAGMADAFASIVADEGYGTLLKGLGATAS
GYFLHGAFKYSFYELFKLLFSSDAAHAVKPPLSIAALSGFFAECIACILL
CPMEAIRIRSVSDSSFPGAVVSGLSLLLKTEGLHGWYKGLPAMLLKQVPY
TVGQFVSFELSVTVVKRIVLTVLGAQSASSAVASISSFAGLLAGISAAII
SHPGDTILSRINQQESEGSAVQQIVRVARAAGFLGLFTGLLPRLVQVSCM
IGGQFLIYDSIKLWCGIVPAAALPSDPLPAVAKAVAAAAKRR*

spliced messenger RNA

>Gvermi11531.t1 ID=Gvermi11531.t1|Name=Gvermi11531.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1329bp|location=Sequence derived from alignment at ScGOVlb_3404:747199..748527+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCGGAGCGTCGCGTCATCGCCGCGCGCGTCCTCTTCGCAGAGTC
TCAGCCGCAGCGCAACATGGCCGTCCACGGGTTGCTcgccgcgcgtctgc
ccccgccgcttggctcccccgccgccgccgccgccgccaccgtcgctgcc
gccgccatgcttcccgcgctcgccgccgcgctgcctctctctgccgccgc
ggaaaccccgcggccgcTCGACTTGTTGCTGGTGTGCTCCGTTTTCTTGC
TCATGGCCTCGCTGGTCAAGTCGCTGTCGCTCGTGCCCGCCGCCAACTTC
CCGCACGTCGATCGCCTCGTCGCCTTCCTCTGTCTGCTCACCATGTCCTC
CTTCTTCTTCCGCCGTCTGGCGCTGCTCGCCGCCGATGGCCACATCACCC
CCACCCGCTTTCTGCAGTTCTTCATCGCCGGTGGCATTTGCGCTTTTCTC
ACCCACGCCGCGTGCACCCCCATCGACGTCGTCAAGACCAGGATCCAGAC
CATGCCAGGCCGCTACGCCGGTATGGCCGACGCCTTTGCCAGCATCGTAG
CCGATGAGGGCTATGGCACCCTGCTCAAGGGGCTTGGTGCCACGGCCAGC
GGCTACTTTTTACACGGCGCCTTCAAGTACTCCTTCTATGAGCTCTTCAA
GCTTTTGTTTTCTTCCGACGCCGCCCACGCAGTCAAGCCTCCGCTTTCCA
TCGCCGCGCTGTCAGGCTTCTTTGCCGAGTGCATCGCCTGCATCTTGCTG
TGCCCCATGGAGGCCATCCGCATTCGCTCCGTGTCGGACTCCTCCTTTCC
GGGCGCCGTAGTTTCGGGCTTGTCGCTCCTGCTTAAGACTGAGGGGCTAC
ATGGCTGGTACAAGGGCTTGCCGGCCATGTTGCTCAAGCAGGTTCCGTAC
ACCGTGGGCCAGTTTGTGTCATTTGAGCTATCGGTGACCGTTGTCAAGCG
CATCGTGCTCACCGTCCTAGGCGCTCAGAGCGCCTCATCAGCCGTCGCCA
GTATTTCGTCCTTTGCTGGTCTCCTGGCCGGCATCAGCGCAGCCATTATT
TCCCATCCTGGTGATACCATTTTGTCAAGGATCAACCAGCAAGAAAGCGA
AGGGTCAGCCGTGCAACAGATTGTGCGAGTCGCGCGTGCCGCTGGTTTCC
TCGGATTGTTTACGGGCCTGCTGCCGAGACTTGTCCAAGTGAGCTGTATG
ATCGGAGGACAGTTCCTTATCTATGATTCCATTAAGCTTTGGTGTGGCAT
TGTTCCTGCCGCTGCTTTACCCTCTGATCCGTTGCCGGCCGTGGCAAAGG
CTGTTGCCGCCGCTGCAAAGCGGAGATGA

protein sequence of Gvermi11531.t1

>Gvermi11531.t1 ID=Gvermi11531.t1|Name=Gvermi11531.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=443bp
MGAERRVIAARVLFAESQPQRNMAVHGLLAARLPPPLGSPAAAAAATVAA
AAMLPALAAALPLSAAAETPRPLDLLLVCSVFLLMASLVKSLSLVPAANF
PHVDRLVAFLCLLTMSSFFFRRLALLAADGHITPTRFLQFFIAGGICAFL
THAACTPIDVVKTRIQTMPGRYAGMADAFASIVADEGYGTLLKGLGATAS
GYFLHGAFKYSFYELFKLLFSSDAAHAVKPPLSIAALSGFFAECIACILL
CPMEAIRIRSVSDSSFPGAVVSGLSLLLKTEGLHGWYKGLPAMLLKQVPY
TVGQFVSFELSVTVVKRIVLTVLGAQSASSAVASISSFAGLLAGISAAII
SHPGDTILSRINQQESEGSAVQQIVRVARAAGFLGLFTGLLPRLVQVSCM
IGGQFLIYDSIKLWCGIVPAAALPSDPLPAVAKAVAAAAKRR*

mRNA from alignment at ScGOVlb_3404:747199..748527+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi11531.t1 ID=Gvermi11531.t1|Name=Gvermi11531.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1329bp|location=Sequence derived from alignment at ScGOVlb_3404:747199..748527+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCGCGGAGCGTCGCGTCATCGCCGCGCGCGTCCTCTTCGCAGAGTC
TCAGCCGCAGCGCAACATGGCCGTCCACGGGTTGCTcgccgcgcgtctgc
ccccgccgcttggctcccccgccgccgccgccgccgccaccgtcgctgcc
gccgccatgcttcccgcgctcgccgccgcgctgcctctctctgccgccgc
ggaaaccccgcggccgcTCGACTTGTTGCTGGTGTGCTCCGTTTTCTTGC
TCATGGCCTCGCTGGTCAAGTCGCTGTCGCTCGTGCCCGCCGCCAACTTC
CCGCACGTCGATCGCCTCGTCGCCTTCCTCTGTCTGCTCACCATGTCCTC
CTTCTTCTTCCGCCGTCTGGCGCTGCTCGCCGCCGATGGCCACATCACCC
CCACCCGCTTTCTGCAGTTCTTCATCGCCGGTGGCATTTGCGCTTTTCTC
ACCCACGCCGCGTGCACCCCCATCGACGTCGTCAAGACCAGGATCCAGAC
CATGCCAGGCCGCTACGCCGGTATGGCCGACGCCTTTGCCAGCATCGTAG
CCGATGAGGGCTATGGCACCCTGCTCAAGGGGCTTGGTGCCACGGCCAGC
GGCTACTTTTTACACGGCGCCTTCAAGTACTCCTTCTATGAGCTCTTCAA
GCTTTTGTTTTCTTCCGACGCCGCCCACGCAGTCAAGCCTCCGCTTTCCA
TCGCCGCGCTGTCAGGCTTCTTTGCCGAGTGCATCGCCTGCATCTTGCTG
TGCCCCATGGAGGCCATCCGCATTCGCTCCGTGTCGGACTCCTCCTTTCC
GGGCGCCGTAGTTTCGGGCTTGTCGCTCCTGCTTAAGACTGAGGGGCTAC
ATGGCTGGTACAAGGGCTTGCCGGCCATGTTGCTCAAGCAGGTTCCGTAC
ACCGTGGGCCAGTTTGTGTCATTTGAGCTATCGGTGACCGTTGTCAAGCG
CATCGTGCTCACCGTCCTAGGCGCTCAGAGCGCCTCATCAGCCGTCGCCA
GTATTTCGTCCTTTGCTGGTCTCCTGGCCGGCATCAGCGCAGCCATTATT
TCCCATCCTGGTGATACCATTTTGTCAAGGATCAACCAGCAAGAAAGCGA
AGGGTCAGCCGTGCAACAGATTGTGCGAGTCGCGCGTGCCGCTGGTTTCC
TCGGATTGTTTACGGGCCTGCTGCCGAGACTTGTCCAAGTGAGCTGTATG
ATCGGAGGACAGTTCCTTATCTATGATTCCATTAAGCTTTGGTGTGGCAT
TGTTCCTGCCGCTGCTTTACCCTCTGATCCGTTGCCGGCCGTGGCAAAGG
CTGTTGCCGCCGCTGCAAAGCGGAGATGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:747199..748527+

>Gvermi11531.t1 ID=Gvermi11531.t1|Name=Gvermi11531.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1329bp|location=Sequence derived from alignment at ScGOVlb_3404:747199..748527+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCGCGGAGCGTCGCGTCATCGCCGCGCGCGTCCTCTTCGCAGAGTC
TCAGCCGCAGCGCAACATGGCCGTCCACGGGTTGCTcgccgcgcgtctgc
ccccgccgcttggctcccccgccgccgccgccgccgccaccgtcgctgcc
gccgccatgcttcccgcgctcgccgccgcgctgcctctctctgccgccgc
ggaaaccccgcggccgcTCGACTTGTTGCTGGTGTGCTCCGTTTTCTTGC
TCATGGCCTCGCTGGTCAAGTCGCTGTCGCTCGTGCCCGCCGCCAACTTC
CCGCACGTCGATCGCCTCGTCGCCTTCCTCTGTCTGCTCACCATGTCCTC
CTTCTTCTTCCGCCGTCTGGCGCTGCTCGCCGCCGATGGCCACATCACCC
CCACCCGCTTTCTGCAGTTCTTCATCGCCGGTGGCATTTGCGCTTTTCTC
ACCCACGCCGCGTGCACCCCCATCGACGTCGTCAAGACCAGGATCCAGAC
CATGCCAGGCCGCTACGCCGGTATGGCCGACGCCTTTGCCAGCATCGTAG
CCGATGAGGGCTATGGCACCCTGCTCAAGGGGCTTGGTGCCACGGCCAGC
GGCTACTTTTTACACGGCGCCTTCAAGTACTCCTTCTATGAGCTCTTCAA
GCTTTTGTTTTCTTCCGACGCCGCCCACGCAGTCAAGCCTCCGCTTTCCA
TCGCCGCGCTGTCAGGCTTCTTTGCCGAGTGCATCGCCTGCATCTTGCTG
TGCCCCATGGAGGCCATCCGCATTCGCTCCGTGTCGGACTCCTCCTTTCC
GGGCGCCGTAGTTTCGGGCTTGTCGCTCCTGCTTAAGACTGAGGGGCTAC
ATGGCTGGTACAAGGGCTTGCCGGCCATGTTGCTCAAGCAGGTTCCGTAC
ACCGTGGGCCAGTTTGTGTCATTTGAGCTATCGGTGACCGTTGTCAAGCG
CATCGTGCTCACCGTCCTAGGCGCTCAGAGCGCCTCATCAGCCGTCGCCA
GTATTTCGTCCTTTGCTGGTCTCCTGGCCGGCATCAGCGCAGCCATTATT
TCCCATCCTGGTGATACCATTTTGTCAAGGATCAACCAGCAAGAAAGCGA
AGGGTCAGCCGTGCAACAGATTGTGCGAGTCGCGCGTGCCGCTGGTTTCC
TCGGATTGTTTACGGGCCTGCTGCCGAGACTTGTCCAAGTGAGCTGTATG
ATCGGAGGACAGTTCCTTATCTATGATTCCATTAAGCTTTGGTGTGGCAT
TGTTCCTGCCGCTGCTTTACCCTCTGATCCGTTGCCGGCCGTGGCAAAGG
CTGTTGCCGCCGCTGCAAAGCGGAGATGA