Gvermi12366.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12366.t1
Unique Name	Gvermi12366.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	578

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4374241..4375974 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706236.1
PFAMs	RPE65,tRNA-synt_2,tRNA_anti-codon
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00055,RC00523
KEGG ko	ko:K01876,ko:K22503
KEGG Reaction	R05577
KEGG Pathway	ko00970,map00970
KEGG Module	M00359,M00360
Evalue	2.18e-157
EggNOG OGs	COG0017@1\|root,COG3670@1\|root,KOG0556@2759\|Eukaryota,KOG1285@2759\|Eukaryota
EC	6.1.1.12
Description	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
COG category	Q
BiGG Reaction	iRC1080.CRv4_Au5_s6_g12982_t1
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12366	Gvermi12366	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4374241..4375974 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12366.t1.start1	Gvermi12366.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4374241..4374243 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12366.t1.CDS1	Gvermi12366.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4374241..4375974 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12366.t1.exon1	Gvermi12366.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4374241..4375974 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12366.t1.stop1	Gvermi12366.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4375972..4375974 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12366.t1	Gvermi12366.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4374241..4375974 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4374241..4375974+
coding sequence from alignment at ScGOVlb_3404:4374241..4375974+

mRNA sequence

>Gvermi12366.t1 ID=Gvermi12366.t1|Name=Gvermi12366.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=578bp
MDEAAKQSKNESAAHPPQPQKSRAEMSEEEKKLLKEAKKAAKEAAKREKA
EKKAAAAKAAADALAASQALVSGIEFLSIDEQPESMYGSYRVIQSKCPPA
GSGRSFSPLSVLSKCAVGELVWVRARVHKAVFTSQVGFMTLRKGLYTVQA
VVEGKELLKWAKKAVTHETIVDINAEIGRPEGGQVERCSISNVELLVRRI
YIVSRAEETLPLSVEDAARPVDDDEPAQDATVDSDANQAARARPRVTRDT
RLDARVVDLRAPPHACLMRVQSGVCQLFREFLYTNGFMEIHSPKLIAGAS
EGGSSVFHLSYFDRQACLAQSPQLYKQMVICSDFNRVFEIGPVFRAEKSH
THRHLCEFTGLDLEMEIYEHYNEILDVLDGLFTAIFDGLESRYANELAVV
RSKWNVPNFKYYPGRPNLRLKWPQAIEMLRGAGVKIGDFEDINTEKEKIL
GKLVKEKYDTDFFMLTHFPSAIRPFYTMVDPVDGRYSNSYDLFMRGEEIV
SGAQRIHDVELLKTRAVAMLGEDGVSSIKDYVNAFRYGAPPHGGAGIGLE
RVVMLYLGVENVRECSLFPRDPERLTP*

spliced messenger RNA

>Gvermi12366.t1 ID=Gvermi12366.t1|Name=Gvermi12366.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1734bp|location=Sequence derived from alignment at ScGOVlb_3404:4374241..4375974+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGAAGCTGCAAAGCAATCGAAAAATGAATCGGCGGCACACCCGCC
GCAGCCCCAGAAGAGCCGCGCCGAAATGAGTGAAGAAGAGAAGAAACTGC
TCAAGGAAGCAAAGAAAGCGGCCAAGGAAGCTGCCAAGCGCGAAAAGGCT
GAGAAGAAGGCCGCCGCTGCCAAGGCTGCCGCGGATGCATTGGCCGCTTC
TCAGGCCCTCGTGAGCGGCATTGAGTTCCTGTCCATCGATGAGCAACCGG
AATCAATGTATGGTTCTTATCGCGTTATACAGAGCAAATGCCCGCCAGCT
GGAAGTGGTCGTTCCTTTTCACCGCTATCCGTGCTTTCAAAATGCGCTGT
GGGTGAACTTGTCTGGGTCAGAGCTCGCGTCCACAAAGCTGTCTTCACGT
CTCAGGTTGGTTTTATGACGCTTAGGAAGGGGTTGTATACTGTCCAGGCT
GTAGTGGAAGGTAAAGAACTTCTGAAATGGGCAAAAAAGGCCGTCACTCA
TGAAACCATTGTTGATATAAATGCTGAGATCGGCCGGCCTGAGGGTGGGC
AGGTTGAGAGATGTTCCATTTCCAACGTTGAACTGCTTGTTCGAAGAATC
TACATTGTGTCGCGCGCGGAGGAGACCTTACCGCTTTCGGTTGAAGATGC
TGCTCGCCCAGTTGACGATGACGAGCCTGCGCAAGATGCCACAGTTGATT
CGGACGCAAATCAAGCCGCGCGTGCCAGACCGCGCGTCACCCGTGACACT
CGGCTGGATGCGCGAGTGGTTGATCTCAGAGCGCCGCCCCATGCATGTTT
GATGCGTGTCCAAAGCGGCGTTTGTCAACTGTTTCGGGAATTTCTGTACA
CCAACGGCTTCATGGAGATTCACTCTCCAAAGCTAATCGCTGGAGCCTCA
GAGGGAGGCTCATCCGTTTTCCACCTGTCTTACTTTGACCGACAGGCCTG
TCTTGCACAAAGCCCGCAGTTGTACAAACAGATGGTCATCTGCAGCGACT
TTAATCGCGTTTTTGAGATAGGCCCAGTGTTCCGCGCGGAGAAGAGCCAC
ACTCACCGACATCTGTGCGAGTTTACGGGTCTCGATCTTGAAATGGAAAT
ATACGAACACTACAACGAGATTCTGGATGTTCTTGACGGGTTGTTTACTG
CTATATTCGATGGACTAGAGAGTCGCTACGCGAATGAGCTTGCTGTCGTG
CGATCCAAATGGAATGTGCCGAATTTCAAGTATTACCCCGGGCGTCCGAA
TCTGCGTCTTAAATGGCCACAGGCCATCGAAATGCTTCGAGGGGCTGGAG
TTAAGATCGGGGACTTTGAGGATATTAACACAGAGAAGGAAAAGATATTA
GGAAAGTTGGTGAAGGAGAAGTACGACACTGACTTCTTCATGCTCACTCA
TTTCCCATCTGCTATCAGACCATTTTATACCATGGTGGACCCTGTCGATG
GTCGATATTCGAACTCCTACGATCTGTTTATGAGAGGGGAGGAAATTGTC
TCTGGTGCGCAGCGAATCCATGACGTAGAACTCCTCAAGACACGTGCGGT
AGCAATGCTTGGCGAGGACGGTGTATCGTCCATCAAGGACTACGTGAATG
CATTCCGATACGGAGCTCCTCCGCATGGTGGCGCTGGAATTGGGCTGGAG
CGGGTTGTGATGTTGTACCTAGGAGTGGAGAATGTGAGAGAGTGTTCGCT
ATTTCCTCGTGATCCGGAGCGTTTAACTCCCTAA

protein sequence of Gvermi12366.t1

>Gvermi12366.t1 ID=Gvermi12366.t1|Name=Gvermi12366.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=578bp
MDEAAKQSKNESAAHPPQPQKSRAEMSEEEKKLLKEAKKAAKEAAKREKA
EKKAAAAKAAADALAASQALVSGIEFLSIDEQPESMYGSYRVIQSKCPPA
GSGRSFSPLSVLSKCAVGELVWVRARVHKAVFTSQVGFMTLRKGLYTVQA
VVEGKELLKWAKKAVTHETIVDINAEIGRPEGGQVERCSISNVELLVRRI
YIVSRAEETLPLSVEDAARPVDDDEPAQDATVDSDANQAARARPRVTRDT
RLDARVVDLRAPPHACLMRVQSGVCQLFREFLYTNGFMEIHSPKLIAGAS
EGGSSVFHLSYFDRQACLAQSPQLYKQMVICSDFNRVFEIGPVFRAEKSH
THRHLCEFTGLDLEMEIYEHYNEILDVLDGLFTAIFDGLESRYANELAVV
RSKWNVPNFKYYPGRPNLRLKWPQAIEMLRGAGVKIGDFEDINTEKEKIL
GKLVKEKYDTDFFMLTHFPSAIRPFYTMVDPVDGRYSNSYDLFMRGEEIV
SGAQRIHDVELLKTRAVAMLGEDGVSSIKDYVNAFRYGAPPHGGAGIGLE
RVVMLYLGVENVRECSLFPRDPERLTP*

mRNA from alignment at ScGOVlb_3404:4374241..4375974+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12366.t1 ID=Gvermi12366.t1|Name=Gvermi12366.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1734bp|location=Sequence derived from alignment at ScGOVlb_3404:4374241..4375974+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATGAAGCTGCAAAGCAATCGAAAAATGAATCGGCGGCACACCCGCC
GCAGCCCCAGAAGAGCCGCGCCGAAATGAGTGAAGAAGAGAAGAAACTGC
TCAAGGAAGCAAAGAAAGCGGCCAAGGAAGCTGCCAAGCGCGAAAAGGCT
GAGAAGAAGGCCGCCGCTGCCAAGGCTGCCGCGGATGCATTGGCCGCTTC
TCAGGCCCTCGTGAGCGGCATTGAGTTCCTGTCCATCGATGAGCAACCGG
AATCAATGTATGGTTCTTATCGCGTTATACAGAGCAAATGCCCGCCAGCT
GGAAGTGGTCGTTCCTTTTCACCGCTATCCGTGCTTTCAAAATGCGCTGT
GGGTGAACTTGTCTGGGTCAGAGCTCGCGTCCACAAAGCTGTCTTCACGT
CTCAGGTTGGTTTTATGACGCTTAGGAAGGGGTTGTATACTGTCCAGGCT
GTAGTGGAAGGTAAAGAACTTCTGAAATGGGCAAAAAAGGCCGTCACTCA
TGAAACCATTGTTGATATAAATGCTGAGATCGGCCGGCCTGAGGGTGGGC
AGGTTGAGAGATGTTCCATTTCCAACGTTGAACTGCTTGTTCGAAGAATC
TACATTGTGTCGCGCGCGGAGGAGACCTTACCGCTTTCGGTTGAAGATGC
TGCTCGCCCAGTTGACGATGACGAGCCTGCGCAAGATGCCACAGTTGATT
CGGACGCAAATCAAGCCGCGCGTGCCAGACCGCGCGTCACCCGTGACACT
CGGCTGGATGCGCGAGTGGTTGATCTCAGAGCGCCGCCCCATGCATGTTT
GATGCGTGTCCAAAGCGGCGTTTGTCAACTGTTTCGGGAATTTCTGTACA
CCAACGGCTTCATGGAGATTCACTCTCCAAAGCTAATCGCTGGAGCCTCA
GAGGGAGGCTCATCCGTTTTCCACCTGTCTTACTTTGACCGACAGGCCTG
TCTTGCACAAAGCCCGCAGTTGTACAAACAGATGGTCATCTGCAGCGACT
TTAATCGCGTTTTTGAGATAGGCCCAGTGTTCCGCGCGGAGAAGAGCCAC
ACTCACCGACATCTGTGCGAGTTTACGGGTCTCGATCTTGAAATGGAAAT
ATACGAACACTACAACGAGATTCTGGATGTTCTTGACGGGTTGTTTACTG
CTATATTCGATGGACTAGAGAGTCGCTACGCGAATGAGCTTGCTGTCGTG
CGATCCAAATGGAATGTGCCGAATTTCAAGTATTACCCCGGGCGTCCGAA
TCTGCGTCTTAAATGGCCACAGGCCATCGAAATGCTTCGAGGGGCTGGAG
TTAAGATCGGGGACTTTGAGGATATTAACACAGAGAAGGAAAAGATATTA
GGAAAGTTGGTGAAGGAGAAGTACGACACTGACTTCTTCATGCTCACTCA
TTTCCCATCTGCTATCAGACCATTTTATACCATGGTGGACCCTGTCGATG
GTCGATATTCGAACTCCTACGATCTGTTTATGAGAGGGGAGGAAATTGTC
TCTGGTGCGCAGCGAATCCATGACGTAGAACTCCTCAAGACACGTGCGGT
AGCAATGCTTGGCGAGGACGGTGTATCGTCCATCAAGGACTACGTGAATG
CATTCCGATACGGAGCTCCTCCGCATGGTGGCGCTGGAATTGGGCTGGAG
CGGGTTGTGATGTTGTACCTAGGAGTGGAGAATGTGAGAGAGTGTTCGCT
ATTTCCTCGTGATCCGGAGCGTTTAACTCCCTAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:4374241..4375974+

>Gvermi12366.t1 ID=Gvermi12366.t1|Name=Gvermi12366.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1734bp|location=Sequence derived from alignment at ScGOVlb_3404:4374241..4375974+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATGAAGCTGCAAAGCAATCGAAAAATGAATCGGCGGCACACCCGCC
GCAGCCCCAGAAGAGCCGCGCCGAAATGAGTGAAGAAGAGAAGAAACTGC
TCAAGGAAGCAAAGAAAGCGGCCAAGGAAGCTGCCAAGCGCGAAAAGGCT
GAGAAGAAGGCCGCCGCTGCCAAGGCTGCCGCGGATGCATTGGCCGCTTC
TCAGGCCCTCGTGAGCGGCATTGAGTTCCTGTCCATCGATGAGCAACCGG
AATCAATGTATGGTTCTTATCGCGTTATACAGAGCAAATGCCCGCCAGCT
GGAAGTGGTCGTTCCTTTTCACCGCTATCCGTGCTTTCAAAATGCGCTGT
GGGTGAACTTGTCTGGGTCAGAGCTCGCGTCCACAAAGCTGTCTTCACGT
CTCAGGTTGGTTTTATGACGCTTAGGAAGGGGTTGTATACTGTCCAGGCT
GTAGTGGAAGGTAAAGAACTTCTGAAATGGGCAAAAAAGGCCGTCACTCA
TGAAACCATTGTTGATATAAATGCTGAGATCGGCCGGCCTGAGGGTGGGC
AGGTTGAGAGATGTTCCATTTCCAACGTTGAACTGCTTGTTCGAAGAATC
TACATTGTGTCGCGCGCGGAGGAGACCTTACCGCTTTCGGTTGAAGATGC
TGCTCGCCCAGTTGACGATGACGAGCCTGCGCAAGATGCCACAGTTGATT
CGGACGCAAATCAAGCCGCGCGTGCCAGACCGCGCGTCACCCGTGACACT
CGGCTGGATGCGCGAGTGGTTGATCTCAGAGCGCCGCCCCATGCATGTTT
GATGCGTGTCCAAAGCGGCGTTTGTCAACTGTTTCGGGAATTTCTGTACA
CCAACGGCTTCATGGAGATTCACTCTCCAAAGCTAATCGCTGGAGCCTCA
GAGGGAGGCTCATCCGTTTTCCACCTGTCTTACTTTGACCGACAGGCCTG
TCTTGCACAAAGCCCGCAGTTGTACAAACAGATGGTCATCTGCAGCGACT
TTAATCGCGTTTTTGAGATAGGCCCAGTGTTCCGCGCGGAGAAGAGCCAC
ACTCACCGACATCTGTGCGAGTTTACGGGTCTCGATCTTGAAATGGAAAT
ATACGAACACTACAACGAGATTCTGGATGTTCTTGACGGGTTGTTTACTG
CTATATTCGATGGACTAGAGAGTCGCTACGCGAATGAGCTTGCTGTCGTG
CGATCCAAATGGAATGTGCCGAATTTCAAGTATTACCCCGGGCGTCCGAA
TCTGCGTCTTAAATGGCCACAGGCCATCGAAATGCTTCGAGGGGCTGGAG
TTAAGATCGGGGACTTTGAGGATATTAACACAGAGAAGGAAAAGATATTA
GGAAAGTTGGTGAAGGAGAAGTACGACACTGACTTCTTCATGCTCACTCA
TTTCCCATCTGCTATCAGACCATTTTATACCATGGTGGACCCTGTCGATG
GTCGATATTCGAACTCCTACGATCTGTTTATGAGAGGGGAGGAAATTGTC
TCTGGTGCGCAGCGAATCCATGACGTAGAACTCCTCAAGACACGTGCGGT
AGCAATGCTTGGCGAGGACGGTGTATCGTCCATCAAGGACTACGTGAATG
CATTCCGATACGGAGCTCCTCCGCATGGTGGCGCTGGAATTGGGCTGGAG
CGGGTTGTGATGTTGTACCTAGGAGTGGAGAATGTGAGAGAGTGTTCGCT
ATTTCCTCGTGATCCGGAGCGTTTAACTCCCTAA