Gvermi12215.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12215.t1
Unique NameGvermi12215.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length122
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3869397..3869822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4641.GSMUA_Achr7P03490_001
PFAMsRibosomal_L37
Max annot lvl35493|Streptophyta
KEGG koko:K17435
Evalue5.07e-06
EggNOG OGsKOG3435@1|root,KOG3435@2759|Eukaryota,37UK0@33090|Viridiplantae,3GIPD@35493|Streptophyta,3M07P@4447|Liliopsida
DescriptionMitochondrial ribosomal protein L37
COG categoryJ
BRITEbr01610,ko00000,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12215Gvermi12215Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3869397..3869822 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12215.t1Gvermi12215.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3869397..3869822 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12215.t1.start1Gvermi12215.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3869397..3869399 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12215.t1.CDS1Gvermi12215.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3869397..3869543 +
Gvermi12215.t1.CDS2Gvermi12215.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3869604..3869822 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12215.t1.exon1Gvermi12215.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3869397..3869543 +
Gvermi12215.t1.exon2Gvermi12215.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3869604..3869822 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12215.t1.intron1Gvermi12215.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3869544..3869603 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12215.t1.stop1Gvermi12215.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3869820..3869822 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12215.t1 ID=Gvermi12215.t1|Name=Gvermi12215.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=122bp
MQALRATKRYLVNDALRKKLRVTPQVRYAQEGFDRMNIYKDPEKAPKEME
DREYPEWLWRLHDPQPTKEELFREANKLFKEGGYDRVFEHMEESRMKRLF
RLQNRDRIKMNNARRKGGQVV*
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spliced messenger RNA

>Gvermi12215.t1 ID=Gvermi12215.t1|Name=Gvermi12215.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=366bp|location=Sequence derived from alignment at ScGOVlb_3404:3869397..3869822+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGCGCTTCGAGCGACAAAACGATATCTGGTAAACGACGCACTTCG
TAAAAAGTTGCGCGTGACACCACAGGTGCGCTATGCACAAGAAGGATTTG
ATCGCATGAATATATACAAAGATCCAGAAAAGGCGCCCAAGGAAATGGAA
GATCGCGAGTACCCAGAATGGCTTTGGAGATTGCATGATCCTCAGCCAAC
TAAGGAGGAGCTATTTCGAGAGGCAAACAAATTATTTAAGGAGGGTGGCT
ATGATCGAGTGTTCGAGCACATGGAGGAGAGCAGAATGAAACGATTGTTT
CGGCTGCAGAACAGAGACAGAATCAAGATGAATAATGCCAGACGCAAGGG
AGGTCAGGTTGTCTAG
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protein sequence of Gvermi12215.t1

>Gvermi12215.t1 ID=Gvermi12215.t1|Name=Gvermi12215.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=122bp
MQALRATKRYLVNDALRKKLRVTPQVRYAQEGFDRMNIYKDPEKAPKEME
DREYPEWLWRLHDPQPTKEELFREANKLFKEGGYDRVFEHMEESRMKRLF
RLQNRDRIKMNNARRKGGQVV*
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mRNA from alignment at ScGOVlb_3404:3869397..3869822+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12215.t1 ID=Gvermi12215.t1|Name=Gvermi12215.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=426bp|location=Sequence derived from alignment at ScGOVlb_3404:3869397..3869822+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAAGCGCTTCGAGCGACAAAACGATATCTGGTAAACGACGCACTTCG
TAAAAAGTTGCGCGTGACACCACAGGTGCGCTATGCACAAGAAGGATTTG
ATCGCATGAATATATACAAAGATCCAGAAAAGGCGCCCAAGGAAATGGTA
AGTGCGTAACAGTACAGATCATTTGCGATATTCGCGTGAGGACTGACTCA
TGTGCAGGAAGATCGCGAGTACCCAGAATGGCTTTGGAGATTGCATGATC
CTCAGCCAACTAAGGAGGAGCTATTTCGAGAGGCAAACAAATTATTTAAG
GAGGGTGGCTATGATCGAGTGTTCGAGCACATGGAGGAGAGCAGAATGAA
ACGATTGTTTCGGCTGCAGAACAGAGACAGAATCAAGATGAATAATGCCA
GACGCAAGGGAGGTCAGGTTGTCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3869397..3869822+

>Gvermi12215.t1 ID=Gvermi12215.t1|Name=Gvermi12215.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=366bp|location=Sequence derived from alignment at ScGOVlb_3404:3869397..3869822+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAAGCGCTTCGAGCGACAAAACGATATCTGGTAAACGACGCACTTCG
TAAAAAGTTGCGCGTGACACCACAGGTGCGCTATGCACAAGAAGGATTTG
ATCGCATGAATATATACAAAGATCCAGAAAAGGCGCCCAAGGAAATGGAA
GATCGCGAGTACCCAGAATGGCTTTGGAGATTGCATGATCCTCAGCCAAC
TAAGGAGGAGCTATTTCGAGAGGCAAACAAATTATTTAAGGAGGGTGGCT
ATGATCGAGTGTTCGAGCACATGGAGGAGAGCAGAATGAAACGATTGTTT
CGGCTGCAGAACAGAGACAGAATCAAGATGAATAATGCCAGACGCAAGGG
AGGTCAGGTTGTCTAG
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