Gvermi12339.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12339.t1
Unique NameGvermi12339.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length94
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4271483..4271859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog936053.I1CUC0
PFAMsSPT_ssu-like
Max annot lvl4751|Fungi
Evalue3.2e-08
EggNOG OGs29P11@1|root,2RWCC@2759|Eukaryota,39IWZ@33154|Opisthokonta,3Q2PI@4751|Fungi,1GXWB@112252|Fungi incertae sedis
DescriptionSmall subunit of serine palmitoyltransferase-like
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12339Gvermi12339Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4271483..4271859 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12339.t1Gvermi12339.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4271483..4271859 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12339.t1.start1Gvermi12339.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4271483..4271485 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12339.t1.CDS1Gvermi12339.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4271483..4271601 +
Gvermi12339.t1.CDS2Gvermi12339.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4271697..4271859 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12339.t1.exon1Gvermi12339.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4271483..4271601 +
Gvermi12339.t1.exon2Gvermi12339.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4271697..4271859 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12339.t1.intron1Gvermi12339.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4271602..4271696 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12339.t1.stop1Gvermi12339.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4271857..4271859 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12339.t1 ID=Gvermi12339.t1|Name=Gvermi12339.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=94bp
MTQPPTAVEPVSDGYGTYEESPNASHPQPNRSFKESVNLWIYRYNLSTAL
YMLEPWERALFNVIVIAILAYIVYGLYNAALHPLFEHIAISYM*
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spliced messenger RNA

>Gvermi12339.t1 ID=Gvermi12339.t1|Name=Gvermi12339.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=282bp|location=Sequence derived from alignment at ScGOVlb_3404:4271483..4271859+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCAACCACCAACAGCAGTGGAGCCAGTATCAGATGGATACGGGAC
ATACGAAGAATCTCCCAACGCTTCCCACCCCCAGCCCAACCGCTCCTTCA
AGGAGTCTGTTAACTTATGGATATACCGATACAATCTTAGCACCGCTCTT
TACATGTTAGAACCATGGGAGCGAGCACTTTTTAATGTCATTGTTATCGC
CATTCTGGCTTACATTGTCTACGGTCTCTATAACGCGGCTCTGCACCCGC
TGTTCGAACATATTGCAATTTCATACATGTAG
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protein sequence of Gvermi12339.t1

>Gvermi12339.t1 ID=Gvermi12339.t1|Name=Gvermi12339.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=94bp
MTQPPTAVEPVSDGYGTYEESPNASHPQPNRSFKESVNLWIYRYNLSTAL
YMLEPWERALFNVIVIAILAYIVYGLYNAALHPLFEHIAISYM*
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mRNA from alignment at ScGOVlb_3404:4271483..4271859+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12339.t1 ID=Gvermi12339.t1|Name=Gvermi12339.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=377bp|location=Sequence derived from alignment at ScGOVlb_3404:4271483..4271859+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTCAACCACCAACAGCAGTGGAGCCAGTATCAGATGGATACGGGAC
ATACGAAGAATCTCCCAACGCTTCCCACCCCCAGCCCAACCGCTCCTTCA
AGGAGTCTGTTAACTTATGGTAAGTCCCATTTTAAAACGATGATCGAAAC
GCAGTGATAATGTCCATCGACCTTACAGGTTCAAGTTTTTACGCATCGCA
CTTGATCTGGGCAGGATATACCGATACAATCTTAGCACCGCTCTTTACAT
GTTAGAACCATGGGAGCGAGCACTTTTTAATGTCATTGTTATCGCCATTC
TGGCTTACATTGTCTACGGTCTCTATAACGCGGCTCTGCACCCGCTGTTC
GAACATATTGCAATTTCATACATGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4271483..4271859+

>Gvermi12339.t1 ID=Gvermi12339.t1|Name=Gvermi12339.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=282bp|location=Sequence derived from alignment at ScGOVlb_3404:4271483..4271859+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTCAACCACCAACAGCAGTGGAGCCAGTATCAGATGGATACGGGAC
ATACGAAGAATCTCCCAACGCTTCCCACCCCCAGCCCAACCGCTCCTTCA
AGGAGTCTGTTAACTTATGGATATACCGATACAATCTTAGCACCGCTCTT
TACATGTTAGAACCATGGGAGCGAGCACTTTTTAATGTCATTGTTATCGC
CATTCTGGCTTACATTGTCTACGGTCTCTATAACGCGGCTCTGCACCCGC
TGTTCGAACATATTGCAATTTCATACATGTAG
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