Gvermi12506.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12506.t1
Unique NameGvermi12506.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length313
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5678850..5679883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1122605.KB893637_gene3164
PFAMsAmino_oxidase
Max annot lvl976|Bacteroidetes
Evalue7.31e-26
EggNOG OGsCOG1231@1|root,COG1231@2|Bacteria,4NJCS@976|Bacteroidetes
DescriptionFlavin containing amine oxidoreductase
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12506Gvermi12506Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 5678850..5679883 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12506.t1Gvermi12506.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 5678850..5679883 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12506.t1.start1Gvermi12506.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 5678850..5678852 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12506.t1.CDS1Gvermi12506.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5678850..5679758 +
Gvermi12506.t1.CDS2Gvermi12506.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5679854..5679883 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12506.t1.exon1Gvermi12506.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5678850..5679758 +
Gvermi12506.t1.exon2Gvermi12506.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5679854..5679883 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12506.t1.intron1Gvermi12506.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 5679759..5679853 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12506.t1.stop1Gvermi12506.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 5679881..5679883 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12506.t1 ID=Gvermi12506.t1|Name=Gvermi12506.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=313bp
MDVLKQQNIDVAIIGAGAAGLFCAYRLLTGLDVDGNPKNVTVAVYEARQR
IGGRINSVKLHPNSDTVELGAMRYLSNQKLINCLIENVIAKNTLVSTTDF
EFVTFYHENGRLRRNLSLEVMKSNLQSIDSKNRSRWVGKSTDSILETVVS
DVLMADGFSLTSLRNDLTESHKKWNEMKKTLTYRFSGPYENCLLNDMSLD
QVLCDQLDKETYEFIRRCDGYDSPYYSSAGYGFEATVEYFTQNCKYRTVK
GGLGIVMQYLENEITRLGGKVYRGHKLRAFKKNSSLTPGYELILDIAPKS
TKRECDFEKCFG*
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spliced messenger RNA

>Gvermi12506.t1 ID=Gvermi12506.t1|Name=Gvermi12506.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=939bp|location=Sequence derived from alignment at ScGOVlb_3404:5678850..5679883+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGTCCTGAAACAACAAAATATCGATGTTGCAATTATCGGAGCCGG
AGCAGCAGGTCTGTTTTGTGCCTATCGCCTTTTAACGGGTTTGGATGTAG
ACGGTAATCCCAAGAACGTTACAGTCGCAGTATATGAAGCTAGACAACGA
ATAGGAGGTCGAATTAACTCGGTGAAGCTTCATCCCAACTCCGACACTGT
AGAACTCGGGGCAATGCGCTACTTGTCAAACCAGAAATTGATCAATTGTT
TGATAGAGAATGTTATTGCGAAGAACACACTTGTCTCAACCACTGACTTT
GAATTCGTCACCTTCTATCATGAAAACGGGCGCCTTCGAAGGAATCTCAG
CCTTGAAGTTATGAAAAGCAATTTACAATCTATTGATTCTAAAAACCGCA
GCAGATGGGTGGGAAAGTCTACTGATAGTATTCTAGAAACGGTTGTATCT
GATGTATTGATGGCTGACGGATTTTCTCTAACAAGTTTGAGAAATGATCT
TACCGAGAGCCACAAAAAATGGAACGAGATGAAGAAAACGCTAACCTACA
GATTTTCAGGGCCGTATGAAAACTGTTTACTGAATGATATGTCTTTAGAT
CAAGTTCTATGCGATCAACTAGACAAAGAGACTTATGAATTCATTCGGCG
CTGTGATGGTTACGATTCACCTTACTACTCTTCTGCTGGTTACGGCTTCG
AAGCGACTGTTGAATATTTCACTCAAAATTGCAAATATCGTACAGTGAAA
GGCGGTCTCGGAATCGTGATGCAATATCTTGAAAACGAGATCACAAGATT
GGGGGGTAAAGTTTATCGCGGACACAAACTGCGTGCTTTTAAGAAGAACA
GCTCTTTGACGCCAGGATATGAGCTTATTCTTGATATTGCCCCAAAAAGC
ACCAAGCGAGAGTGTGATTTTGAGAAATGCTTTGGATAG
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protein sequence of Gvermi12506.t1

>Gvermi12506.t1 ID=Gvermi12506.t1|Name=Gvermi12506.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=313bp
MDVLKQQNIDVAIIGAGAAGLFCAYRLLTGLDVDGNPKNVTVAVYEARQR
IGGRINSVKLHPNSDTVELGAMRYLSNQKLINCLIENVIAKNTLVSTTDF
EFVTFYHENGRLRRNLSLEVMKSNLQSIDSKNRSRWVGKSTDSILETVVS
DVLMADGFSLTSLRNDLTESHKKWNEMKKTLTYRFSGPYENCLLNDMSLD
QVLCDQLDKETYEFIRRCDGYDSPYYSSAGYGFEATVEYFTQNCKYRTVK
GGLGIVMQYLENEITRLGGKVYRGHKLRAFKKNSSLTPGYELILDIAPKS
TKRECDFEKCFG*
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mRNA from alignment at ScGOVlb_3404:5678850..5679883+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12506.t1 ID=Gvermi12506.t1|Name=Gvermi12506.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1034bp|location=Sequence derived from alignment at ScGOVlb_3404:5678850..5679883+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATGTCCTGAAACAACAAAATATCGATGTTGCAATTATCGGAGCCGG
AGCAGCAGGTCTGTTTTGTGCCTATCGCCTTTTAACGGGTTTGGATGTAG
ACGGTAATCCCAAGAACGTTACAGTCGCAGTATATGAAGCTAGACAACGA
ATAGGAGGTCGAATTAACTCGGTGAAGCTTCATCCCAACTCCGACACTGT
AGAACTCGGGGCAATGCGCTACTTGTCAAACCAGAAATTGATCAATTGTT
TGATAGAGAATGTTATTGCGAAGAACACACTTGTCTCAACCACTGACTTT
GAATTCGTCACCTTCTATCATGAAAACGGGCGCCTTCGAAGGAATCTCAG
CCTTGAAGTTATGAAAAGCAATTTACAATCTATTGATTCTAAAAACCGCA
GCAGATGGGTGGGAAAGTCTACTGATAGTATTCTAGAAACGGTTGTATCT
GATGTATTGATGGCTGACGGATTTTCTCTAACAAGTTTGAGAAATGATCT
TACCGAGAGCCACAAAAAATGGAACGAGATGAAGAAAACGCTAACCTACA
GATTTTCAGGGCCGTATGAAAACTGTTTACTGAATGATATGTCTTTAGAT
CAAGTTCTATGCGATCAACTAGACAAAGAGACTTATGAATTCATTCGGCG
CTGTGATGGTTACGATTCACCTTACTACTCTTCTGCTGGTTACGGCTTCG
AAGCGACTGTTGAATATTTCACTCAAAATTGCAAATATCGTACAGTGAAA
GGCGGTCTCGGAATCGTGATGCAATATCTTGAAAACGAGATCACAAGATT
GGGGGGTAAAGTTTATCGCGGACACAAACTGCGTGCTTTTAAGAAGAACA
GCTCTTTGACGCCAGGATATGAGCTTATTCTTGATATTGCCCCAAAAAGC
ACCAAGCGAGTGATCTTCGCGAAAAACTTAATTCTCTGCGTCCCTCCACG
GGGAATCGAGCTCTTGGACCGCTCATCTTATCTTTTTGCTAAAAATTCTT
CCAGGAGTGTGATTTTGAGAAATGCTTTGGATAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:5678850..5679883+

>Gvermi12506.t1 ID=Gvermi12506.t1|Name=Gvermi12506.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=939bp|location=Sequence derived from alignment at ScGOVlb_3404:5678850..5679883+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATGTCCTGAAACAACAAAATATCGATGTTGCAATTATCGGAGCCGG
AGCAGCAGGTCTGTTTTGTGCCTATCGCCTTTTAACGGGTTTGGATGTAG
ACGGTAATCCCAAGAACGTTACAGTCGCAGTATATGAAGCTAGACAACGA
ATAGGAGGTCGAATTAACTCGGTGAAGCTTCATCCCAACTCCGACACTGT
AGAACTCGGGGCAATGCGCTACTTGTCAAACCAGAAATTGATCAATTGTT
TGATAGAGAATGTTATTGCGAAGAACACACTTGTCTCAACCACTGACTTT
GAATTCGTCACCTTCTATCATGAAAACGGGCGCCTTCGAAGGAATCTCAG
CCTTGAAGTTATGAAAAGCAATTTACAATCTATTGATTCTAAAAACCGCA
GCAGATGGGTGGGAAAGTCTACTGATAGTATTCTAGAAACGGTTGTATCT
GATGTATTGATGGCTGACGGATTTTCTCTAACAAGTTTGAGAAATGATCT
TACCGAGAGCCACAAAAAATGGAACGAGATGAAGAAAACGCTAACCTACA
GATTTTCAGGGCCGTATGAAAACTGTTTACTGAATGATATGTCTTTAGAT
CAAGTTCTATGCGATCAACTAGACAAAGAGACTTATGAATTCATTCGGCG
CTGTGATGGTTACGATTCACCTTACTACTCTTCTGCTGGTTACGGCTTCG
AAGCGACTGTTGAATATTTCACTCAAAATTGCAAATATCGTACAGTGAAA
GGCGGTCTCGGAATCGTGATGCAATATCTTGAAAACGAGATCACAAGATT
GGGGGGTAAAGTTTATCGCGGACACAAACTGCGTGCTTTTAAGAAGAACA
GCTCTTTGACGCCAGGATATGAGCTTATTCTTGATATTGCCCCAAAAAGC
ACCAAGCGAGAGTGTGATTTTGAGAAATGCTTTGGATAG
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