Gvermi12341.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12341.t1
Unique NameGvermi12341.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length550
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4277952..4279601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8364.ENSXETP00000063741
Preferred nameznf711
PFAMsZfx_Zfy_act,zf-C2H2,zf-H2C2_5
Max annot lvl33208|Metazoa
GOsGO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0030312,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0035805,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0060388,GO:0065007,GO:0071944,GO:0080090,GO:0097159,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Evalue5.97e-13
EggNOG OGsKOG1721@1|root,KOG1721@2759|Eukaryota,38HDY@33154|Opisthokonta,3BJBE@33208|Metazoa,3CWBY@33213|Bilateria,488KR@7711|Chordata,495CB@7742|Vertebrata
DescriptionZinc finger protein 711
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12341Gvermi12341Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4277952..4279601 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12341.t1.stop1Gvermi12341.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4277952..4277954 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12341.t1.CDS1Gvermi12341.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4277952..4279601 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12341.t1.exon1Gvermi12341.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4277952..4279601 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12341.t1.start1Gvermi12341.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4279599..4279601 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12341.t1Gvermi12341.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4277952..4279601 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12341.t1 ID=Gvermi12341.t1|Name=Gvermi12341.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=550bp
MNTNPTQSGLNSGSAPLPSTLPTTQTTRGLPQPSFYAPPYNASQPMNPPV
SIPLQSSVPSRSLYHPQGSYVVHGPVIPNYSSGEEVRCLPSVRSIVSAIN
LERHSAYSMPSYQVPHATTHEANGWSTVQHGHAPAVAAIYNHPYSSHGYP
SQYVNHPYSTLPTTQIQAPHTRVEAAPNRQASHAAPPPPPLESNITSHYT
NMHTTAVDARTPAAIPYSHGAMANNRVQIHNLYESMDNGHSQPHPGAFRC
HTEHQGYFQNTDLGPHGQIPPAISNPPRAAQSARDELRTATPPVPAHDAY
RTHAIQQSVSDPLHNGDSDNDESGRYIAPSPNGEGGLTEAFLAQITARAF
QYEDGIVQCSECGEGYGNIASWKRHASRAHRVDQASRLQCPICSIELRNE
GNLKRHLETVHKDVPDQFICHHCPASFSSDRARSIHTMRIHSIPQDLPAE
GGISKSNGKRIRTAAPKPKMHKCSHCEYVSKWKGNISRHIKSVHLALRPF
ACNECDKKFNTASNLTVHEMTHERDRERNRLQANERESDDNRERGRQEE*
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spliced messenger RNA

>Gvermi12341.t1 ID=Gvermi12341.t1|Name=Gvermi12341.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1650bp|location=Sequence derived from alignment at ScGOVlb_3404:4277952..4279601- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATACCAACCCCACGCAAAGCGGCCTCAACTCGGGTAGTGCCCCTTT
GCCATCGACTCTTCCAACTACACAAACCACCAGAGGTCTCCCGCAACCCT
CGTTCTATGCACCTCCGTACAATGCCTCACAACCAATGAATCCACCGGTT
TCGATTCCGCTGCAATCATCTGTTCCGTCCCGATCCCTTTATCATCCTCA
AGGTTCATATGTGGTTCACGGTCCGGTTATTCCGAACTATTCAAGTGGGG
AAGAAGTAAGATGTCTCCCCTCAGTGCGAAGCATTGTCTCCGCCATCAAT
CTCGAAAGGCATTCTGCTTATTCAATGCCATCATATCAGGTGCCGCACGC
TACAACACATGAAGCCAATGGATGGAGCACGGTCCAACATGGACATGCCC
CCGCAGTGGCCGCGATCTACAATCATCCATATAGCTCTCATGGCTATCCG
AGTCAATATGTGAACCATCCGTACTCTACTTTGCCGACAACACAAATACA
GGCACCCCATACGAGAGTAGAGGCGGCACCAAATCGTCAAGCCAGTCACG
CTGCCCCTCCACCACCACCATTGGAATCCAACATCACGTCCCACTACACA
AACATGCACACAACAGCTGTGGATGCAAGGACGCCGGCCGCTATCCCTTA
TTCACACGGAGCTATGGCTAATAATCGCGTTCAAATTCATAATCTGTACG
AATCTATGGATAACGGTCACTCTCAGCCCCATCCCGGGGCTTTCAGATGT
CACACCGAGCACCAGGGCTATTTCCAGAACACAGACTTGGGCCCGCATGG
ACAAATACCGCCCGCAATCTCGAATCCCCCTCGCGCAGCACAGAGTGCGA
GAGATGAGCTCAGGACTGCGACACCACCGGTTCCGGCCCATGATGCCTAC
CGTACCCATGCGATTCAACAATCTGTTTCGGATCCATTGCACAACGGCGA
CAGCGATAATGACGAGTCTGGCAGATATATCGCTCCGAGTCCCAACGGGG
AGGGAGGCCTGACGGAAGCATTCCTGGCCCAAATCACTGCTAGAGCTTTT
CAGTACGAAGATGGAATTGTGCAGTGCAGTGAGTGTGGTGAAGGATACGG
AAACATCGCTTCGTGGAAACGACATGCATCTAGGGCCCATCGAGTAGATC
AGGCTTCCAGGCTCCAATGTCCGATATGCTCCATCGAACTGAGGAACGAG
GGGAACTTAAAGAGGCATCTCGAGACAGTGCATAAGGATGTACCGGACCA
GTTCATATGCCATCACTGTCCGGCATCCTTTTCATCCGATCGAGCCCGGT
CCATTCACACGATGCGGATACACTCTATTCCACAAGATCTTCCAGCCGAA
GGTGGCATTTCGAAGTCAAATGGAAAGAGAATAAGGACGGCGGCACCAAA
ACCGAAGATGCACAAGTGCTCCCATTGTGAGTATGTATCAAAATGGAAAG
GGAACATATCTCGACACATCAAATCAGTCCATTTGGCCCTTCGACCATTC
GCATGCAATGAATGCGATAAGAAGTTCAACACTGCGAGTAACCTCACAGT
GCACGAAATGACCCACGAGCGAGACCGTGAGCGAAATCGCTTGCAGGCAA
ATGAAAGGGAAAGCGATGATAATAGAGAACGGGGTCGGCAAGAGGAATAG
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protein sequence of Gvermi12341.t1

>Gvermi12341.t1 ID=Gvermi12341.t1|Name=Gvermi12341.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=550bp
MNTNPTQSGLNSGSAPLPSTLPTTQTTRGLPQPSFYAPPYNASQPMNPPV
SIPLQSSVPSRSLYHPQGSYVVHGPVIPNYSSGEEVRCLPSVRSIVSAIN
LERHSAYSMPSYQVPHATTHEANGWSTVQHGHAPAVAAIYNHPYSSHGYP
SQYVNHPYSTLPTTQIQAPHTRVEAAPNRQASHAAPPPPPLESNITSHYT
NMHTTAVDARTPAAIPYSHGAMANNRVQIHNLYESMDNGHSQPHPGAFRC
HTEHQGYFQNTDLGPHGQIPPAISNPPRAAQSARDELRTATPPVPAHDAY
RTHAIQQSVSDPLHNGDSDNDESGRYIAPSPNGEGGLTEAFLAQITARAF
QYEDGIVQCSECGEGYGNIASWKRHASRAHRVDQASRLQCPICSIELRNE
GNLKRHLETVHKDVPDQFICHHCPASFSSDRARSIHTMRIHSIPQDLPAE
GGISKSNGKRIRTAAPKPKMHKCSHCEYVSKWKGNISRHIKSVHLALRPF
ACNECDKKFNTASNLTVHEMTHERDRERNRLQANERESDDNRERGRQEE*
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mRNA from alignment at ScGOVlb_3404:4277952..4279601-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12341.t1 ID=Gvermi12341.t1|Name=Gvermi12341.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1650bp|location=Sequence derived from alignment at ScGOVlb_3404:4277952..4279601- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATACCAACCCCACGCAAAGCGGCCTCAACTCGGGTAGTGCCCCTTT
GCCATCGACTCTTCCAACTACACAAACCACCAGAGGTCTCCCGCAACCCT
CGTTCTATGCACCTCCGTACAATGCCTCACAACCAATGAATCCACCGGTT
TCGATTCCGCTGCAATCATCTGTTCCGTCCCGATCCCTTTATCATCCTCA
AGGTTCATATGTGGTTCACGGTCCGGTTATTCCGAACTATTCAAGTGGGG
AAGAAGTAAGATGTCTCCCCTCAGTGCGAAGCATTGTCTCCGCCATCAAT
CTCGAAAGGCATTCTGCTTATTCAATGCCATCATATCAGGTGCCGCACGC
TACAACACATGAAGCCAATGGATGGAGCACGGTCCAACATGGACATGCCC
CCGCAGTGGCCGCGATCTACAATCATCCATATAGCTCTCATGGCTATCCG
AGTCAATATGTGAACCATCCGTACTCTACTTTGCCGACAACACAAATACA
GGCACCCCATACGAGAGTAGAGGCGGCACCAAATCGTCAAGCCAGTCACG
CTGCCCCTCCACCACCACCATTGGAATCCAACATCACGTCCCACTACACA
AACATGCACACAACAGCTGTGGATGCAAGGACGCCGGCCGCTATCCCTTA
TTCACACGGAGCTATGGCTAATAATCGCGTTCAAATTCATAATCTGTACG
AATCTATGGATAACGGTCACTCTCAGCCCCATCCCGGGGCTTTCAGATGT
CACACCGAGCACCAGGGCTATTTCCAGAACACAGACTTGGGCCCGCATGG
ACAAATACCGCCCGCAATCTCGAATCCCCCTCGCGCAGCACAGAGTGCGA
GAGATGAGCTCAGGACTGCGACACCACCGGTTCCGGCCCATGATGCCTAC
CGTACCCATGCGATTCAACAATCTGTTTCGGATCCATTGCACAACGGCGA
CAGCGATAATGACGAGTCTGGCAGATATATCGCTCCGAGTCCCAACGGGG
AGGGAGGCCTGACGGAAGCATTCCTGGCCCAAATCACTGCTAGAGCTTTT
CAGTACGAAGATGGAATTGTGCAGTGCAGTGAGTGTGGTGAAGGATACGG
AAACATCGCTTCGTGGAAACGACATGCATCTAGGGCCCATCGAGTAGATC
AGGCTTCCAGGCTCCAATGTCCGATATGCTCCATCGAACTGAGGAACGAG
GGGAACTTAAAGAGGCATCTCGAGACAGTGCATAAGGATGTACCGGACCA
GTTCATATGCCATCACTGTCCGGCATCCTTTTCATCCGATCGAGCCCGGT
CCATTCACACGATGCGGATACACTCTATTCCACAAGATCTTCCAGCCGAA
GGTGGCATTTCGAAGTCAAATGGAAAGAGAATAAGGACGGCGGCACCAAA
ACCGAAGATGCACAAGTGCTCCCATTGTGAGTATGTATCAAAATGGAAAG
GGAACATATCTCGACACATCAAATCAGTCCATTTGGCCCTTCGACCATTC
GCATGCAATGAATGCGATAAGAAGTTCAACACTGCGAGTAACCTCACAGT
GCACGAAATGACCCACGAGCGAGACCGTGAGCGAAATCGCTTGCAGGCAA
ATGAAAGGGAAAGCGATGATAATAGAGAACGGGGTCGGCAAGAGGAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4277952..4279601-

>Gvermi12341.t1 ID=Gvermi12341.t1|Name=Gvermi12341.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1650bp|location=Sequence derived from alignment at ScGOVlb_3404:4277952..4279601- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATACCAACCCCACGCAAAGCGGCCTCAACTCGGGTAGTGCCCCTTT
GCCATCGACTCTTCCAACTACACAAACCACCAGAGGTCTCCCGCAACCCT
CGTTCTATGCACCTCCGTACAATGCCTCACAACCAATGAATCCACCGGTT
TCGATTCCGCTGCAATCATCTGTTCCGTCCCGATCCCTTTATCATCCTCA
AGGTTCATATGTGGTTCACGGTCCGGTTATTCCGAACTATTCAAGTGGGG
AAGAAGTAAGATGTCTCCCCTCAGTGCGAAGCATTGTCTCCGCCATCAAT
CTCGAAAGGCATTCTGCTTATTCAATGCCATCATATCAGGTGCCGCACGC
TACAACACATGAAGCCAATGGATGGAGCACGGTCCAACATGGACATGCCC
CCGCAGTGGCCGCGATCTACAATCATCCATATAGCTCTCATGGCTATCCG
AGTCAATATGTGAACCATCCGTACTCTACTTTGCCGACAACACAAATACA
GGCACCCCATACGAGAGTAGAGGCGGCACCAAATCGTCAAGCCAGTCACG
CTGCCCCTCCACCACCACCATTGGAATCCAACATCACGTCCCACTACACA
AACATGCACACAACAGCTGTGGATGCAAGGACGCCGGCCGCTATCCCTTA
TTCACACGGAGCTATGGCTAATAATCGCGTTCAAATTCATAATCTGTACG
AATCTATGGATAACGGTCACTCTCAGCCCCATCCCGGGGCTTTCAGATGT
CACACCGAGCACCAGGGCTATTTCCAGAACACAGACTTGGGCCCGCATGG
ACAAATACCGCCCGCAATCTCGAATCCCCCTCGCGCAGCACAGAGTGCGA
GAGATGAGCTCAGGACTGCGACACCACCGGTTCCGGCCCATGATGCCTAC
CGTACCCATGCGATTCAACAATCTGTTTCGGATCCATTGCACAACGGCGA
CAGCGATAATGACGAGTCTGGCAGATATATCGCTCCGAGTCCCAACGGGG
AGGGAGGCCTGACGGAAGCATTCCTGGCCCAAATCACTGCTAGAGCTTTT
CAGTACGAAGATGGAATTGTGCAGTGCAGTGAGTGTGGTGAAGGATACGG
AAACATCGCTTCGTGGAAACGACATGCATCTAGGGCCCATCGAGTAGATC
AGGCTTCCAGGCTCCAATGTCCGATATGCTCCATCGAACTGAGGAACGAG
GGGAACTTAAAGAGGCATCTCGAGACAGTGCATAAGGATGTACCGGACCA
GTTCATATGCCATCACTGTCCGGCATCCTTTTCATCCGATCGAGCCCGGT
CCATTCACACGATGCGGATACACTCTATTCCACAAGATCTTCCAGCCGAA
GGTGGCATTTCGAAGTCAAATGGAAAGAGAATAAGGACGGCGGCACCAAA
ACCGAAGATGCACAAGTGCTCCCATTGTGAGTATGTATCAAAATGGAAAG
GGAACATATCTCGACACATCAAATCAGTCCATTTGGCCCTTCGACCATTC
GCATGCAATGAATGCGATAAGAAGTTCAACACTGCGAGTAACCTCACAGT
GCACGAAATGACCCACGAGCGAGACCGTGAGCGAAATCGCTTGCAGGCAA
ATGAAAGGGAAAGCGATGATAATAGAGAACGGGGTCGGCAAGAGGAATAG
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