Gvermi12382.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12382.t1
Unique NameGvermi12382.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length146
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4453986..4454628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog77586.LPERR03G18880.1
Preferred nameMUB1
PFAMsRad60-SLD_2
Max annot lvl35493|Streptophyta
Evalue1.03e-05
EggNOG OGs2AWEP@1|root,2RZYK@2759|Eukaryota,37UNP@33090|Viridiplantae,3GJXW@35493|Streptophyta,3M0IY@4447|Liliopsida,3IHTM@38820|Poales
DescriptionMay serve as docking site to facilitate the association of other proteins to the plasma membrane
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12382Gvermi12382Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4453986..4454628 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12382.t1Gvermi12382.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4453986..4454628 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12382.t1.start1Gvermi12382.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4453986..4453988 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12382.t1.CDS1Gvermi12382.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4453986..4454178 +
Gvermi12382.t1.CDS2Gvermi12382.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4454295..4454408 +
Gvermi12382.t1.CDS3Gvermi12382.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4454498..4454628 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12382.t1.exon1Gvermi12382.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4453986..4454178 +
Gvermi12382.t1.exon2Gvermi12382.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4454295..4454408 +
Gvermi12382.t1.exon3Gvermi12382.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4454498..4454628 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12382.t1.intron1Gvermi12382.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4454179..4454294 +
Gvermi12382.t1.intron2Gvermi12382.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4454409..4454497 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12382.t1.stop1Gvermi12382.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4454626..4454628 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12382.t1 ID=Gvermi12382.t1|Name=Gvermi12382.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=146bp
MDVDKTALSQADTALTDLDSSPAVNHSMCDIRFLLVNGTSFRLSVPASST
ILNVKNAVIQHRPKELADFLDDTSPGVAASAAVDDIRVLHLGKFLDDAKT
LKECNFTTASNEFTTVHLSVRVPTSPSDQVKDKFNKKGSMCCQVM*
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spliced messenger RNA

>Gvermi12382.t1 ID=Gvermi12382.t1|Name=Gvermi12382.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=438bp|location=Sequence derived from alignment at ScGOVlb_3404:4453986..4454628+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTCGACAAGACCGCCCTCTCGCAGGCCGACACCGCCCTCACCGA
CCTCGACTCCTCGCCCGCCGTCAACCACTCCATGTGCGACATTCGCTTCC
TGTTGGTCAACGGCACGTCGTTCCGCCTCTCCGTCCCCGCCTCCTCCACC
ATCCTCAACGTCAAGAACGCCGTCATTCAACACAGACCAAAAGAACTCGC
CGATTTCCTCGACGACACCAGCCCGGGCGTCGCCGCCTCCGCCGCCGTCG
ACGACATCCGCGTGCTGCACCTGGGAAAGTTTCTCGACGACGCCAAGACG
CTCAAAGAGTGCAACTTCACCACCGCAAGCAACGAGTTCACCACCGTTCA
CCTCTCCGTGCGCGTCCCCACCAGCCCTTCGGACCAGGTCAAGGACAAAT
TCAACAAAAAGGGCTCCATGTGCTGCCAGGTCATGTAG
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protein sequence of Gvermi12382.t1

>Gvermi12382.t1 ID=Gvermi12382.t1|Name=Gvermi12382.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=146bp
MDVDKTALSQADTALTDLDSSPAVNHSMCDIRFLLVNGTSFRLSVPASST
ILNVKNAVIQHRPKELADFLDDTSPGVAASAAVDDIRVLHLGKFLDDAKT
LKECNFTTASNEFTTVHLSVRVPTSPSDQVKDKFNKKGSMCCQVM*
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mRNA from alignment at ScGOVlb_3404:4453986..4454628+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12382.t1 ID=Gvermi12382.t1|Name=Gvermi12382.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=643bp|location=Sequence derived from alignment at ScGOVlb_3404:4453986..4454628+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGTCGACAAGACCGCCCTCTCGCAGGCCGACACCGCCCTCACCGA
CCTCGACTCCTCGCCCGCCGTCAACCACTCCATGTGCGACATTCGCTTCC
TGTTGGTCAACGGCACGTCGTTCCGCCTCTCCGTCCCCGCCTCCTCCACC
ATCCTCAACGTCAAGAACGCCGTCATTCAACACAGACCAAAAGGTAAGCG
ACTCCCATcgccgcgcgcccgcgccctcgccgcgcccgactgcgccattg
acaacaccgccgctgtgcccgcgcttgcgcccgtgtgcccgccttgcgcc
gcgcccCAGAACTCGCCGATTTCCTCGACGACACCAGCCCGGGCGTCGCC
GCCTCCGCCGCCGTCGACGACATCCGCGTGCTGCACCTGGGAAAGTTTCT
CGACGACGCCAAGACGCTCAAAGGTACGTGCCGCCGCACTGcgccgcgcc
cgccgcgtgacgccacgcccccgccgcgccgcgcccgctctgacaccccc
gcgccgccacAGAGTGCAACTTCACCACCGCAAGCAACGAGTTCACCACC
GTTCACCTCTCCGTGCGCGTCCCCACCAGCCCTTCGGACCAGGTCAAGGA
CAAATTCAACAAAAAGGGCTCCATGTGCTGCCAGGTCATGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4453986..4454628+

>Gvermi12382.t1 ID=Gvermi12382.t1|Name=Gvermi12382.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=438bp|location=Sequence derived from alignment at ScGOVlb_3404:4453986..4454628+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGTCGACAAGACCGCCCTCTCGCAGGCCGACACCGCCCTCACCGA
CCTCGACTCCTCGCCCGCCGTCAACCACTCCATGTGCGACATTCGCTTCC
TGTTGGTCAACGGCACGTCGTTCCGCCTCTCCGTCCCCGCCTCCTCCACC
ATCCTCAACGTCAAGAACGCCGTCATTCAACACAGACCAAAAGAACTCGC
CGATTTCCTCGACGACACCAGCCCGGGCGTCGCCGCCTCCGCCGCCGTCG
ACGACATCCGCGTGCTGCACCTGGGAAAGTTTCTCGACGACGCCAAGACG
CTCAAAGAGTGCAACTTCACCACCGCAAGCAACGAGTTCACCACCGTTCA
CCTCTCCGTGCGCGTCCCCACCAGCCCTTCGGACCAGGTCAAGGACAAAT
TCAACAAAAAGGGCTCCATGTGCTGCCAGGTCATGTAG
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