Gvermi12328.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12328.t1
Unique Name	Gvermi12328.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	608

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4232918..4234741 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6669.EFX84588
Preferred name	NAE1
PFAMs	ThiF
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K04532
KEGG Pathway	ko05010,map05010
GOs	GO:0000075,GO:0000076,GO:0000278,GO:0001540,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0006915,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0008219,GO:0008641,GO:0009966,GO:0009968,GO:0009987,GO:0010389,GO:0010564,GO:0010646,GO:0010648,GO:0010941,GO:0010948,GO:0010972,GO:0012501,GO:0016874,GO:0016877,GO:0019538,GO:0019781,GO:0019899,GO:0022402,GO:0023051,GO:0023052,GO:0023057,GO:0031570,GO:0031625,GO:0032446,GO:0032991,GO:0033218,GO:0033314,GO:0036211,GO:0042277,GO:0042981,GO:0043067,GO:0043170,GO:0043412,GO:0043516,GO:0043518,GO:0043523,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0044774,GO:0044818,GO:0045116,GO:0045786,GO:0045930,GO:0046982,GO:0046983,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051402,GO:0051716,GO:0051726,GO:0065007,GO:0070647,GO:0070997,GO:0071704,GO:0080134,GO:0080135,GO:1901214,GO:1901564,GO:1901796,GO:1901797,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902531,GO:1902532,GO:1902749,GO:1902750,GO:1903047,GO:2001020,GO:2001021
Evalue	3.2e-86
EggNOG OGs	COG0476@1\|root,KOG2016@2759\|Eukaryota,38CHG@33154\|Opisthokonta,3BGZ3@33208\|Metazoa,3CZGJ@33213\|Bilateria,41TJ4@6656\|Arthropoda
Description	NEDD8-activating enzyme E1 regulatory
COG category	O
BRITE	ko00000,ko00001,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12328	Gvermi12328	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4232918..4234741 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12328.t1.stop1	Gvermi12328.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4232918..4232920 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12328.t1.CDS1	Gvermi12328.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4232918..4234741 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12328.t1.exon1	Gvermi12328.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4232918..4234741 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12328.t1.start1	Gvermi12328.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4234739..4234741 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12328.t1	Gvermi12328.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4232918..4234741 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4232918..4234741-
coding sequence from alignment at ScGOVlb_3404:4232918..4234741-

mRNA sequence

>Gvermi12328.t1 ID=Gvermi12328.t1|Name=Gvermi12328.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=608bp
MAQRAGAQPRPAASAAHKYDRQLRIWGDAGQAALRRASLCLVHASASGTE
TVKNLVLPAIGAVTIVDGAPLEPHHTAANFFLTHLSHPLHNRAHALVQSM
HQLNHECTTSFVPHHAHAFIDSPSAAYAFVLRFSVVVVADMPPTHPVVQH
LSDACFRANVPFVLLRCYGMIGYLRIQTPMLCVLNARHNDLPPDLCVHAP
FPQLLALADATHLQSISDTTQLSHVPFVIILTKAVQLFRSRHNNRLPETT
QHKQLFKQLVQSLRPAHCPQAAQNFEEALKPSNLRLCYAQTNAIPPDVQA
VLSHPNSNAQTSKAFFVHLEQPQLHLLPEIVHYSKQHTKPSKCMEDDDRQ
ATSAAPPDIRAAEAIACEQARFWLVVAALRQFVQQCGRLPVRGSLPDMTA
DTESYIALQRIFSDKADKDAKRVFHFVQRIAEERATDVDIDEAFVKSFCR
NVHSIRIMSAKSLKQELKEWNLHAFKEAAMVEGSLDASTNGKASPYYAIL
RAVDKFHRENGRYPGSDAVVKHSDLALMHAYVSEVKEELGLQPNSGHWRD
ETEEMVRYANAELHNVAAFMGGIAAQEITKIVTQQFVPLDNTLVVNMAEQ
SSITFAA*

spliced messenger RNA

>Gvermi12328.t1 ID=Gvermi12328.t1|Name=Gvermi12328.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1824bp|location=Sequence derived from alignment at ScGOVlb_3404:4232918..4234741- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCAGCGCGCCGGCGCCCAGCCGCGCCCCGCCGCCTCCGCCGCCCA
CAAGTACGATCGCCAGCTGCGCATCTGGGGCGATGCCGGCCAGGCCGCCC
TGCGCCGCGCCTCGCTCTGCCTCGTCCACGCCTCCGCCTCCGGCACCGAG
ACCGTCAAGAACCTCGTCCTGCCCGCCATCGGCGCCGTCACCATCGTCGA
CGGCGCCCCCCTCGAGCCCCACCACACCGCCGCCAATTTCTTCCTCACCC
ACCTCTCCCATCCGCTTCACAACCGCGCCCACGCCCTTGTGCAGTCCATG
CACCAGCTCAATCACGAGTGCACCACCTCCTTCGTCCCGCATCATGCCCA
CGCCTTCATTGATTCGCCCTCGGCCGCCTATGCCTTCGTGCTCCGCTTTT
CCGTCGTTGTGGTCGCTGACATGCCGCCCACCCACCCCGTCGTCCAGCAT
CTGTCCGATGCTTGTTTCCGCGCCAACGTCCCGTTCGTGCTGCTGCGCTG
TTACGGAATGATCGGATACCTCCGCATTCAGACCCCGATGCTCTGCGTTC
TCAACGCCAGGCACAACGATCTGCCCCCGGACCTGTGCGTTCATGCGCCC
TTCCCGCAGCTGCTCGCTCTCGCCGACGCAACTCATCTGCAATCCATTTC
CGACACCACCCAACTCTCGCACGTCCCCTTCGTTATCATTCTCACTAAAG
CAGTGCAACTTTTCCGCTCGCGCCACAATAATCGACTCCCCGAAACAACG
CAACACAAACAACTCTTCAAGCAACTTGTTCAGTCGCTGCGTCCCGCCCA
CTGCCCTCAAGCCGCTCAAAACTTTGAAGAGGCGCTCAAGCCGTCCAATT
TGCGCCTGTGTTACGCTCAAACCAACGCCATCCCCCCCGACGTGCAGGCC
GTTCTGTCTCATCCAAACAGCAACGCCCAGACCTCCAAAGCGTTTTTCGT
CCACCTCGAACAACCCCAACTCCACCTCCTCCCCGAAATCGTCCACTACT
CCAAACAACACACCAAGCCGTCCAAGTGCATGGAGGACGACGACAGGCAA
GCAACCAGTGCCGCCCCACCTGACATCCGTGCAGCCGAAGCAATTGCATG
CGAGCAAGCCCGTTTTTGGTTGGTCGTCGCCGCCCTTCGACAATTCGTGC
AGCAATGTGGCCGGTTGCCAGTGCGCGGCTCTTTGCCGGACATGACCGCC
GATACCGAGTCCTACATTGCTTTGCAGCGCATTTTCTCCGACAAGGCCGA
TAAGGACGCAAAACGTGTATTCCACTTTGTGCAACGTATTGCCGAGGAGC
GTGCAACCGATGTGGATATCGATGAAGCCTTTGTCAAATCATTTTGCAGG
AATGTACACTCCATACGCATCATGTCCGCCAAAAGCCTCAAGCAAGAGCT
CAAAGAATGGAACCTGCATGCCTTCAAGGAAGCCGCCATGGTGGAGGGCA
GTTTGGATGCCAGCACCAACGGCAAAGCTTCTCCCTACTACGCCATACTT
CGAGCCGTGGACAAGTTTCATCGCGAGAACGGCCGCTACCCTGGCAGTGA
TGCCGTCGTGAAACACAGTGACCTGGCACTCATGCACGCGTACGTTTCCG
AGGTCAAGGAAGAGCTCGGCCTGCAGCCAAATAGCGGCCATTGGAGAGAT
GAAACGGAAGAAATGGTGCGCTATGCTAATGCAGAGCTGCACAACGTGGC
TGCTTTTATGGGCGGAATCGCCGCGCAGGAAATAACCAAGATTGTCACGC
AGCAGTTTGTTCCTTTGGATAACACACTCGTCGTCAATATGGCCGAGCAG
AGCAGCATAACTTTTGCTGCGTGA

protein sequence of Gvermi12328.t1

>Gvermi12328.t1 ID=Gvermi12328.t1|Name=Gvermi12328.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=608bp
MAQRAGAQPRPAASAAHKYDRQLRIWGDAGQAALRRASLCLVHASASGTE
TVKNLVLPAIGAVTIVDGAPLEPHHTAANFFLTHLSHPLHNRAHALVQSM
HQLNHECTTSFVPHHAHAFIDSPSAAYAFVLRFSVVVVADMPPTHPVVQH
LSDACFRANVPFVLLRCYGMIGYLRIQTPMLCVLNARHNDLPPDLCVHAP
FPQLLALADATHLQSISDTTQLSHVPFVIILTKAVQLFRSRHNNRLPETT
QHKQLFKQLVQSLRPAHCPQAAQNFEEALKPSNLRLCYAQTNAIPPDVQA
VLSHPNSNAQTSKAFFVHLEQPQLHLLPEIVHYSKQHTKPSKCMEDDDRQ
ATSAAPPDIRAAEAIACEQARFWLVVAALRQFVQQCGRLPVRGSLPDMTA
DTESYIALQRIFSDKADKDAKRVFHFVQRIAEERATDVDIDEAFVKSFCR
NVHSIRIMSAKSLKQELKEWNLHAFKEAAMVEGSLDASTNGKASPYYAIL
RAVDKFHRENGRYPGSDAVVKHSDLALMHAYVSEVKEELGLQPNSGHWRD
ETEEMVRYANAELHNVAAFMGGIAAQEITKIVTQQFVPLDNTLVVNMAEQ
SSITFAA*

mRNA from alignment at ScGOVlb_3404:4232918..4234741-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12328.t1 ID=Gvermi12328.t1|Name=Gvermi12328.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1824bp|location=Sequence derived from alignment at ScGOVlb_3404:4232918..4234741- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCCAGCGCGCCGGCGCCCAGCCGCGCCCCGCCGCCTCCGCCGCCCA
CAAGTACGATCGCCAGCTGCGCATCTGGGGCGATGCCGGCCAGGCCGCCC
TGCGCCGCGCCTCGCTCTGCCTCGTCCACGCCTCCGCCTCCGGCACCGAG
ACCGTCAAGAACCTCGTCCTGCCCGCCATCGGCGCCGTCACCATCGTCGA
CGGCGCCCCCCTCGAGCCCCACCACACCGCCGCCAATTTCTTCCTCACCC
ACCTCTCCCATCCGCTTCACAACCGCGCCCACGCCCTTGTGCAGTCCATG
CACCAGCTCAATCACGAGTGCACCACCTCCTTCGTCCCGCATCATGCCCA
CGCCTTCATTGATTCGCCCTCGGCCGCCTATGCCTTCGTGCTCCGCTTTT
CCGTCGTTGTGGTCGCTGACATGCCGCCCACCCACCCCGTCGTCCAGCAT
CTGTCCGATGCTTGTTTCCGCGCCAACGTCCCGTTCGTGCTGCTGCGCTG
TTACGGAATGATCGGATACCTCCGCATTCAGACCCCGATGCTCTGCGTTC
TCAACGCCAGGCACAACGATCTGCCCCCGGACCTGTGCGTTCATGCGCCC
TTCCCGCAGCTGCTCGCTCTCGCCGACGCAACTCATCTGCAATCCATTTC
CGACACCACCCAACTCTCGCACGTCCCCTTCGTTATCATTCTCACTAAAG
CAGTGCAACTTTTCCGCTCGCGCCACAATAATCGACTCCCCGAAACAACG
CAACACAAACAACTCTTCAAGCAACTTGTTCAGTCGCTGCGTCCCGCCCA
CTGCCCTCAAGCCGCTCAAAACTTTGAAGAGGCGCTCAAGCCGTCCAATT
TGCGCCTGTGTTACGCTCAAACCAACGCCATCCCCCCCGACGTGCAGGCC
GTTCTGTCTCATCCAAACAGCAACGCCCAGACCTCCAAAGCGTTTTTCGT
CCACCTCGAACAACCCCAACTCCACCTCCTCCCCGAAATCGTCCACTACT
CCAAACAACACACCAAGCCGTCCAAGTGCATGGAGGACGACGACAGGCAA
GCAACCAGTGCCGCCCCACCTGACATCCGTGCAGCCGAAGCAATTGCATG
CGAGCAAGCCCGTTTTTGGTTGGTCGTCGCCGCCCTTCGACAATTCGTGC
AGCAATGTGGCCGGTTGCCAGTGCGCGGCTCTTTGCCGGACATGACCGCC
GATACCGAGTCCTACATTGCTTTGCAGCGCATTTTCTCCGACAAGGCCGA
TAAGGACGCAAAACGTGTATTCCACTTTGTGCAACGTATTGCCGAGGAGC
GTGCAACCGATGTGGATATCGATGAAGCCTTTGTCAAATCATTTTGCAGG
AATGTACACTCCATACGCATCATGTCCGCCAAAAGCCTCAAGCAAGAGCT
CAAAGAATGGAACCTGCATGCCTTCAAGGAAGCCGCCATGGTGGAGGGCA
GTTTGGATGCCAGCACCAACGGCAAAGCTTCTCCCTACTACGCCATACTT
CGAGCCGTGGACAAGTTTCATCGCGAGAACGGCCGCTACCCTGGCAGTGA
TGCCGTCGTGAAACACAGTGACCTGGCACTCATGCACGCGTACGTTTCCG
AGGTCAAGGAAGAGCTCGGCCTGCAGCCAAATAGCGGCCATTGGAGAGAT
GAAACGGAAGAAATGGTGCGCTATGCTAATGCAGAGCTGCACAACGTGGC
TGCTTTTATGGGCGGAATCGCCGCGCAGGAAATAACCAAGATTGTCACGC
AGCAGTTTGTTCCTTTGGATAACACACTCGTCGTCAATATGGCCGAGCAG
AGCAGCATAACTTTTGCTGCGTGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:4232918..4234741-

>Gvermi12328.t1 ID=Gvermi12328.t1|Name=Gvermi12328.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1824bp|location=Sequence derived from alignment at ScGOVlb_3404:4232918..4234741- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCCAGCGCGCCGGCGCCCAGCCGCGCCCCGCCGCCTCCGCCGCCCA
CAAGTACGATCGCCAGCTGCGCATCTGGGGCGATGCCGGCCAGGCCGCCC
TGCGCCGCGCCTCGCTCTGCCTCGTCCACGCCTCCGCCTCCGGCACCGAG
ACCGTCAAGAACCTCGTCCTGCCCGCCATCGGCGCCGTCACCATCGTCGA
CGGCGCCCCCCTCGAGCCCCACCACACCGCCGCCAATTTCTTCCTCACCC
ACCTCTCCCATCCGCTTCACAACCGCGCCCACGCCCTTGTGCAGTCCATG
CACCAGCTCAATCACGAGTGCACCACCTCCTTCGTCCCGCATCATGCCCA
CGCCTTCATTGATTCGCCCTCGGCCGCCTATGCCTTCGTGCTCCGCTTTT
CCGTCGTTGTGGTCGCTGACATGCCGCCCACCCACCCCGTCGTCCAGCAT
CTGTCCGATGCTTGTTTCCGCGCCAACGTCCCGTTCGTGCTGCTGCGCTG
TTACGGAATGATCGGATACCTCCGCATTCAGACCCCGATGCTCTGCGTTC
TCAACGCCAGGCACAACGATCTGCCCCCGGACCTGTGCGTTCATGCGCCC
TTCCCGCAGCTGCTCGCTCTCGCCGACGCAACTCATCTGCAATCCATTTC
CGACACCACCCAACTCTCGCACGTCCCCTTCGTTATCATTCTCACTAAAG
CAGTGCAACTTTTCCGCTCGCGCCACAATAATCGACTCCCCGAAACAACG
CAACACAAACAACTCTTCAAGCAACTTGTTCAGTCGCTGCGTCCCGCCCA
CTGCCCTCAAGCCGCTCAAAACTTTGAAGAGGCGCTCAAGCCGTCCAATT
TGCGCCTGTGTTACGCTCAAACCAACGCCATCCCCCCCGACGTGCAGGCC
GTTCTGTCTCATCCAAACAGCAACGCCCAGACCTCCAAAGCGTTTTTCGT
CCACCTCGAACAACCCCAACTCCACCTCCTCCCCGAAATCGTCCACTACT
CCAAACAACACACCAAGCCGTCCAAGTGCATGGAGGACGACGACAGGCAA
GCAACCAGTGCCGCCCCACCTGACATCCGTGCAGCCGAAGCAATTGCATG
CGAGCAAGCCCGTTTTTGGTTGGTCGTCGCCGCCCTTCGACAATTCGTGC
AGCAATGTGGCCGGTTGCCAGTGCGCGGCTCTTTGCCGGACATGACCGCC
GATACCGAGTCCTACATTGCTTTGCAGCGCATTTTCTCCGACAAGGCCGA
TAAGGACGCAAAACGTGTATTCCACTTTGTGCAACGTATTGCCGAGGAGC
GTGCAACCGATGTGGATATCGATGAAGCCTTTGTCAAATCATTTTGCAGG
AATGTACACTCCATACGCATCATGTCCGCCAAAAGCCTCAAGCAAGAGCT
CAAAGAATGGAACCTGCATGCCTTCAAGGAAGCCGCCATGGTGGAGGGCA
GTTTGGATGCCAGCACCAACGGCAAAGCTTCTCCCTACTACGCCATACTT
CGAGCCGTGGACAAGTTTCATCGCGAGAACGGCCGCTACCCTGGCAGTGA
TGCCGTCGTGAAACACAGTGACCTGGCACTCATGCACGCGTACGTTTCCG
AGGTCAAGGAAGAGCTCGGCCTGCAGCCAAATAGCGGCCATTGGAGAGAT
GAAACGGAAGAAATGGTGCGCTATGCTAATGCAGAGCTGCACAACGTGGC
TGCTTTTATGGGCGGAATCGCCGCGCAGGAAATAACCAAGATTGTCACGC
AGCAGTTTGTTCCTTTGGATAACACACTCGTCGTCAATATGGCCGAGCAG
AGCAGCATAACTTTTGCTGCGTGA