Gvermi12391.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12391.t1
Unique NameGvermi12391.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length430
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4480297..4482435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708850.1
Preferred nameDDX39A
PFAMsDEAD,Helicase_C
Max annot lvl2759|Eukaryota
KEGG koko:K12812,ko:K13182
KEGG Pathwayko03013,ko03015,ko03040,ko05164,map03013,map03015,map03040,map05164
KEGG ModuleM00406,M00430
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005730,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0008026,GO:0008104,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0010501,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0031123,GO:0031124,GO:0031503,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0034641,GO:0042623,GO:0042802,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0050789,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070035,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0140098,GO:1901360,GO:1990904
Evalue3.07e-219
EggNOG OGsCOG0513@1|root,KOG0329@2759|Eukaryota
EC3.6.4.13
DescriptionmRNA-containing ribonucleoprotein complex export from nucleus
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12391Gvermi12391Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4480297..4482435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12391.t1Gvermi12391.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4480297..4482435 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12391.t1.start1Gvermi12391.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4480297..4480299 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12391.t1.CDS1Gvermi12391.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4480297..4480412 +
Gvermi12391.t1.CDS2Gvermi12391.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4481262..4482435 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12391.t1.exon1Gvermi12391.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4480297..4480412 +
Gvermi12391.t1.exon2Gvermi12391.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4481262..4482435 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12391.t1.intron1Gvermi12391.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4480413..4481261 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12391.t1.stop1Gvermi12391.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4482433..4482435 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12391.t1 ID=Gvermi12391.t1|Name=Gvermi12391.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=430bp
MDNSNKPNELGEDDLVDYEEEDDTPVEKPAENGKHSANKGTYVGIHSAGF
KDFLLGPELLRAIQDCGFEHPSEVQHECIPQAVLGYDILCQAKSGMGKTA
VFVLAVLQQLVPMEGEVSAIVLGHTRELAYQIAHEIERFSKYLPNIRSAV
IYGGVPVKQHKDLLASNPPHIVVGTPGRVKDLVQQKALDLSKVKFFVLDE
CDKVLDALDMRRDIQQIFTETPHVKQVMMFTATLSKEMRIVAKKFMKDPI
EVIVDDETKLTLHGLLQYYVKLTEAEKNRKMADILDALEFNQVVIFVKSV
SRAIELNKLLVECNFPSIDIHSNIKQDERIRRYKAFKDFQKRILVATDIF
GRGIDIERVNIVINYDMSSSPDSYLHRVGRAGRFGTKGLAISFISSETDS
EVLQGVQSRFEVAISELPQTVDQASYMNA*
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spliced messenger RNA

>Gvermi12391.t1 ID=Gvermi12391.t1|Name=Gvermi12391.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at ScGOVlb_3404:4480297..4482435+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAACTCCAACAAGCCCAACGAACTTGGTGAGGACGACCTCGTCGA
CTACGAGGAGGAAGATGACACCCCCGTTGAGAAGCCTGCCGAAAACGGCA
AGCACTCAGCAAACAAGGGCACATATGTCGGAATTCACTCTGCGGGCTTT
AAGGACTTTCTTTTAGGTCCAGAACTTCTTCGCGCCATTCAAGACTGTGG
TTTCGAACACCCTTCGGAAGTGCAACATGAATGTATCCCGCAGGCTGTGT
TGGGATACGATATTCTGTGTCAAGCCAAGTCGGGCATGGGTAAGACTGCC
GTCTTTGTTCTCGCAGTGTTGCAGCAACTTGTACCTATGGAAGGCGAGGT
GAGCGCCATAGTTTTGGGCCACACTCGTGAACTGGCATACCAAATTGCCC
ATGAGATTGAACGTTTTTCCAAGTATTTACCGAACATACGATCGGCTGTC
ATCTATGGCGGTGTTCCTGTCAAGCAGCACAAGGACCTCTTGGCTTCTAA
TCCGCCCCACATCGTAGTTGGAACACCAGGCAGGGTGAAAGATCTGGTGC
AGCAAAAGGCTTTGGACTTGAGCAAAGTTAAGTTTTTCGTTCTTGATGAA
TGCGATAAGGTGCTTGATGCGCTTGACATGCGTCGTGATATTCAGCAAAT
CTTCACGGAAACCCCTCACGTTAAGCAGGTCATGATGTTTACCGCCACCC
TCTCAAAGGAGATGCGTATTGTGGCAAAGAAATTTATGAAAGATCCTATT
GAAGTCATTGTTGATGACGAGACAAAACTGACACTCCATGGCCTACTGCA
GTACTATGTCAAACTAACAGAGGCAGAAAAGAATCGAAAGATGGCAGACA
TTTTAGATGCCTTGGAATTCAATCAGGTTGTGATCTTTGTGAAGAGTGTA
TCTCGTGCAATTGAATTGAACAAACTATTGGTGGAATGCAATTTCCCCTC
AATTGACATCCACTCTAACATCAAACAGGATGAACGTATTCGGAGGTACA
AAGCGTTCAAGGATTTCCAAAAGAGAATTCTCGTTGCAACGGACATCTTT
GGCAGAGGAATTGATATTGAAAGAGTGAACATCGTCATCAACTACGATAT
GTCTTCAAGCCCCGACAGCTATCTACATAGAGTTGGTCGAGCCGGACGGT
TCGGAACTAAGGGCCTTGCGATCTCTTTTATCAGCTCTGAGACTGATTCA
GAAGTTCTTCAAGGTGTCCAATCCCGTTTCGAGGTCGCGATTTCCGAGTT
ACCCCAGACTGTGGACCAAGCCTCTTACATGAATGCGTAA
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protein sequence of Gvermi12391.t1

>Gvermi12391.t1 ID=Gvermi12391.t1|Name=Gvermi12391.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=430bp
MDNSNKPNELGEDDLVDYEEEDDTPVEKPAENGKHSANKGTYVGIHSAGF
KDFLLGPELLRAIQDCGFEHPSEVQHECIPQAVLGYDILCQAKSGMGKTA
VFVLAVLQQLVPMEGEVSAIVLGHTRELAYQIAHEIERFSKYLPNIRSAV
IYGGVPVKQHKDLLASNPPHIVVGTPGRVKDLVQQKALDLSKVKFFVLDE
CDKVLDALDMRRDIQQIFTETPHVKQVMMFTATLSKEMRIVAKKFMKDPI
EVIVDDETKLTLHGLLQYYVKLTEAEKNRKMADILDALEFNQVVIFVKSV
SRAIELNKLLVECNFPSIDIHSNIKQDERIRRYKAFKDFQKRILVATDIF
GRGIDIERVNIVINYDMSSSPDSYLHRVGRAGRFGTKGLAISFISSETDS
EVLQGVQSRFEVAISELPQTVDQASYMNA*
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mRNA from alignment at ScGOVlb_3404:4480297..4482435+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12391.t1 ID=Gvermi12391.t1|Name=Gvermi12391.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2139bp|location=Sequence derived from alignment at ScGOVlb_3404:4480297..4482435+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACAACTCCAACAAGCCCAACGAACTTGGTGAGGACGACCTCGTCGA
CTACGAGGAGGAAGATGACACCCCCGTTGAGAAGCCTGCCGAAAACGGCA
AGCACTCAGCAAACAAGTATGCTATACCACACACCTTTTTCTCTCCTCCC
GCTCTGCCCTGTTGCTGCTCGTGTCCGTCATGCTTCATCGCGCCACCTCG
TCCGAATTCTGCACTGGTTGGCGTTGCCACATCACAGTTGCGTCGCACTT
CATATCTTCATTCCGGCGCCCTGTGACGGGGACACAAGCCCACCTTCTCT
TTTCTCGTTCGCCTTTGGTATGTACGTGCGCAATGCTGCGCCCGGCAAAA
GCAAAAGTGCTTGCTGCAACATACCTTTCCGTCGCCTGTGAAATTTGTTG
CATGATCCAGCGTTCTGCGGTTGCTAGCATTGCGGCGCTGCCTTCCGCCT
ACGCGTCATGCACCTTTCAGCCCACTGAAACGGTGGAAAGGTGTACGGCC
TTACCTTGGTGAAGCGCCCACGTTTTTGCCATGGCATTTTTGGCGGGCCC
CACGCGGTTTCCACCACGAAAGCCAGGGGCGAGTCTGGTCCAACACTAGA
ATTGCGCACCAATTTCACAACGCGTCCCGTTTCACCGTAGATGCTAATTT
CAACCTTTGCGATCTACTCGCATGTGATCGCATCACCCCATAATTCTAAC
GGACTTTCCAATAGTTTTTTCATACATATTTCTGGCTCGCTAAGCCGCAA
TGAGCACTCTGAAACTCACGTTTCCTCATCACAGGGCAGCAGTTGATTCA
AATTTGAAGCTGATCGGGCAGCGACGGGGCAGAGCGACCACGCGCAATAA
CAGAACACAACTCCTACTCACTCGTTAGTCTTGGGTTTCCTTTTCATTTA
TATTCGTCGTATTCTAACTTTTTGATACACTGCTTTCATTTATCATGTTT
TTCATTCTAATCCAGGGGCACATATGTCGGAATTCACTCTGCGGGCTTTA
AGGACTTTCTTTTAGGTCCAGAACTTCTTCGCGCCATTCAAGACTGTGGT
TTCGAACACCCTTCGGAAGTGCAACATGAATGTATCCCGCAGGCTGTGTT
GGGATACGATATTCTGTGTCAAGCCAAGTCGGGCATGGGTAAGACTGCCG
TCTTTGTTCTCGCAGTGTTGCAGCAACTTGTACCTATGGAAGGCGAGGTG
AGCGCCATAGTTTTGGGCCACACTCGTGAACTGGCATACCAAATTGCCCA
TGAGATTGAACGTTTTTCCAAGTATTTACCGAACATACGATCGGCTGTCA
TCTATGGCGGTGTTCCTGTCAAGCAGCACAAGGACCTCTTGGCTTCTAAT
CCGCCCCACATCGTAGTTGGAACACCAGGCAGGGTGAAAGATCTGGTGCA
GCAAAAGGCTTTGGACTTGAGCAAAGTTAAGTTTTTCGTTCTTGATGAAT
GCGATAAGGTGCTTGATGCGCTTGACATGCGTCGTGATATTCAGCAAATC
TTCACGGAAACCCCTCACGTTAAGCAGGTCATGATGTTTACCGCCACCCT
CTCAAAGGAGATGCGTATTGTGGCAAAGAAATTTATGAAAGATCCTATTG
AAGTCATTGTTGATGACGAGACAAAACTGACACTCCATGGCCTACTGCAG
TACTATGTCAAACTAACAGAGGCAGAAAAGAATCGAAAGATGGCAGACAT
TTTAGATGCCTTGGAATTCAATCAGGTTGTGATCTTTGTGAAGAGTGTAT
CTCGTGCAATTGAATTGAACAAACTATTGGTGGAATGCAATTTCCCCTCA
ATTGACATCCACTCTAACATCAAACAGGATGAACGTATTCGGAGGTACAA
AGCGTTCAAGGATTTCCAAAAGAGAATTCTCGTTGCAACGGACATCTTTG
GCAGAGGAATTGATATTGAAAGAGTGAACATCGTCATCAACTACGATATG
TCTTCAAGCCCCGACAGCTATCTACATAGAGTTGGTCGAGCCGGACGGTT
CGGAACTAAGGGCCTTGCGATCTCTTTTATCAGCTCTGAGACTGATTCAG
AAGTTCTTCAAGGTGTCCAATCCCGTTTCGAGGTCGCGATTTCCGAGTTA
CCCCAGACTGTGGACCAAGCCTCTTACATGAATGCGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4480297..4482435+

>Gvermi12391.t1 ID=Gvermi12391.t1|Name=Gvermi12391.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1290bp|location=Sequence derived from alignment at ScGOVlb_3404:4480297..4482435+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACAACTCCAACAAGCCCAACGAACTTGGTGAGGACGACCTCGTCGA
CTACGAGGAGGAAGATGACACCCCCGTTGAGAAGCCTGCCGAAAACGGCA
AGCACTCAGCAAACAAGGGCACATATGTCGGAATTCACTCTGCGGGCTTT
AAGGACTTTCTTTTAGGTCCAGAACTTCTTCGCGCCATTCAAGACTGTGG
TTTCGAACACCCTTCGGAAGTGCAACATGAATGTATCCCGCAGGCTGTGT
TGGGATACGATATTCTGTGTCAAGCCAAGTCGGGCATGGGTAAGACTGCC
GTCTTTGTTCTCGCAGTGTTGCAGCAACTTGTACCTATGGAAGGCGAGGT
GAGCGCCATAGTTTTGGGCCACACTCGTGAACTGGCATACCAAATTGCCC
ATGAGATTGAACGTTTTTCCAAGTATTTACCGAACATACGATCGGCTGTC
ATCTATGGCGGTGTTCCTGTCAAGCAGCACAAGGACCTCTTGGCTTCTAA
TCCGCCCCACATCGTAGTTGGAACACCAGGCAGGGTGAAAGATCTGGTGC
AGCAAAAGGCTTTGGACTTGAGCAAAGTTAAGTTTTTCGTTCTTGATGAA
TGCGATAAGGTGCTTGATGCGCTTGACATGCGTCGTGATATTCAGCAAAT
CTTCACGGAAACCCCTCACGTTAAGCAGGTCATGATGTTTACCGCCACCC
TCTCAAAGGAGATGCGTATTGTGGCAAAGAAATTTATGAAAGATCCTATT
GAAGTCATTGTTGATGACGAGACAAAACTGACACTCCATGGCCTACTGCA
GTACTATGTCAAACTAACAGAGGCAGAAAAGAATCGAAAGATGGCAGACA
TTTTAGATGCCTTGGAATTCAATCAGGTTGTGATCTTTGTGAAGAGTGTA
TCTCGTGCAATTGAATTGAACAAACTATTGGTGGAATGCAATTTCCCCTC
AATTGACATCCACTCTAACATCAAACAGGATGAACGTATTCGGAGGTACA
AAGCGTTCAAGGATTTCCAAAAGAGAATTCTCGTTGCAACGGACATCTTT
GGCAGAGGAATTGATATTGAAAGAGTGAACATCGTCATCAACTACGATAT
GTCTTCAAGCCCCGACAGCTATCTACATAGAGTTGGTCGAGCCGGACGGT
TCGGAACTAAGGGCCTTGCGATCTCTTTTATCAGCTCTGAGACTGATTCA
GAAGTTCTTCAAGGTGTCCAATCCCGTTTCGAGGTCGCGATTTCCGAGTT
ACCCCAGACTGTGGACCAAGCCTCTTACATGAATGCGTAA
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