Gvermi12478.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12478.t1
Unique NameGvermi12478.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length649
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5152839..5154785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12478Gvermi12478Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 5152839..5154785 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12478.t1.start1Gvermi12478.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 5152839..5152841 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12478.t1.CDS1Gvermi12478.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5152839..5154785 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12478.t1.exon1Gvermi12478.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5152839..5154785 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12478.t1.stop1Gvermi12478.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 5154783..5154785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12478.t1Gvermi12478.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 5152839..5154785 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12478.t1 ID=Gvermi12478.t1|Name=Gvermi12478.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=649bp
MATELSPPKNTAETLDNLSATTGALIDAFDQIITLPFVDSLRIDALGELS
IADVVLDLKQKYQELQGNTLPFARTLYAYAGLQLQTIPTINAGLDLSTYL
NLHKLIIARHKLEASNVKKQSETFRKTFVATLDVFESTIKELGEQIQDLE
KQIQDTKDLQEKERAVAIIAGIFTFIFTVVAILAIVATAGAVGPAASSAT
STIAVQGSASVGFFTALGSSIGAAAGTSGLIAVSAAASTAALGGLAETIV
SSIEARNFARAVSALETLKESAETARDHLLEVVNLMTVIENSLEDIVSVW
TDVESSLSIIQSDVDNWNDENFSEELVASTLEEWEDVRTAVAKYTAVVSG
DRSLNLEKQSDVHLPADEIINLTRSFAISELQSNLHAPDIEFEGKLSDLC
QMRSALETTKSLPNIRDTLKSQVTAALGHFGEVQTGLEQSSDELASFTKQ
RLAWLDAFEIAEVTKRIDMVAQLEAAVENFEVGIARAQETEAKAFLFQTS
VGLVISTLIRIINENNVKQHALKKELEKLEKDRKRRKWLWVVPVAGAVNE
IVDAANNIRGKIKRGRREIRLISNSCQQLRKLSSTVSSSVKDSTLVTQTY
SSILNDTRAGIDDAAIFKVFGAALPADLFVSLKESWTELEIDIKEFKE*
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spliced messenger RNA

>Gvermi12478.t1 ID=Gvermi12478.t1|Name=Gvermi12478.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1947bp|location=Sequence derived from alignment at ScGOVlb_3404:5152839..5154785+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACGGAACTTTCTCCCCCGAAGAACACCGCAGAGACTCTCGATAA
TCTCTCCGCCACTACAGGTGCTCTGATAGATGCATTTGATCAGATTATTA
CACTGCCTTTCGTCGACTCTTTGAGAATCGACGCTCTCGGTGAATTGTCT
ATTGCAGATGTCGTGCTCGATCTGAAACAGAAGTATCAAGAATTGCAGGG
AAATACGTTACCATTCGCTCGAACCTTATATGCGTATGCTGGTCTTCAGC
TGCAAACCATTCCTACCATCAATGCTGGCTTGGATTTGAGCACCTACCTC
AACCTCCACAAACTTATCATCGCGAGGCACAAGCTTGAGGCATCCAACGT
CAAGAAACAAAGCGAAACCTTTCGCAAAACATTTGTCGCAACTCTGGACG
TTTTTGAAAGCACAATAAAAGAGCTCGGCGAACAAATTCAAGATCTTGAA
AAGCAGATTCAGGATACGAAGGATCTTCAGGAGAAGGAGCGAGCTGTCGC
TATTATAGCCGGCATCTTCACATTTATCTTCACTGTGGTAGCCATCTTGG
CAATTGTCGCAACAGCGGGAGCTGTGGGTCCCGCGGCCAGCTCTGCCACA
TCCACTATAGCCGTTCAGGGTAGTGCGTCTGTGGGATTCTTTACAGCTCT
GGGTTCTTCCATAGGAGCTGCAGCAGGCACATCAGGACTTATTGCCGTAT
CTGCAGCTGCTTCAACAGCTGCTCTCGGTGGCCTGGCAGAAACGATTGTC
TCTTCAATCGAAGCTCGTAATTTCGCAAGAGCTGTATCTGCGCTCGAGAC
TCTTAAAGAAAGTGCCGAAACCGCCCGAGACCATCTTCTGGAAGTCGTTA
ACCTCATGACTGTCATTGAAAATTCGCTGGAAGATATTGTATCTGTGTGG
ACTGATGTTGAGAGTTCACTCAGCATTATTCAAAGCGATGTCGATAATTG
GAACGACGAAAACTTTTCTGAGGAACTGGTGGCATCTACGCTTGAGGAAT
GGGAAGATGTCCGCACCGCAGTTGCGAAGTATACTGCGGTCGTTTCTGGG
GATCGAAGTTTAAATTTGGAGAAACAGTCAGATGTCCATCTGCCTGCCGA
CGAAATCATCAATTTGACACGGAGCTTTGCAATTTCCGAACTGCAATCAA
ACCTTCACGCACCGGACATTGAATTCGAAGGCAAGCTTTCAGACCTTTGT
CAAATGCGTTCGGCGCTCGAAACAACAAAATCGTTACCAAATATCCGGGA
CACTCTGAAATCCCAGGTTACAGCCGCGTTGGGGCATTTTGGTGAAGTAC
AAACAGGCCTGGAGCAGTCGTCAGATGAATTAGCCAGTTTCACAAAACAA
CGTCTGGCATGGCTCGATGCTTTTGAAATTGCTGAAGTGACCAAAAGGAT
TGATATGGTGGCTCAACTCGAAGCAGCAGTTGAGAATTTTGAGGTTGGTA
TTGCTCGTGCCCAAGAAACTGAAGCAAAGGCATTCCTATTCCAAACGTCA
GTTGGTCTCGTGATTAGCACCCTTATCCGCATCATTAATGAAAATAATGT
GAAGCAGCATGCTCTCAAAAAGGAACTGGAAAAATTGGAAAAAGACCGAA
AGCGCAGGAAGTGGCTTTGGGTTGTACCGGTGGCTGGGGCTGTCAATGAA
ATCGTTGATGCGGCGAATAACATTCGGGGAAAAATCAAGAGAGGTCGGCG
AGAAATACGGCTAATATCGAACAGTTGTCAGCAGCTCCGCAAACTAAGCA
GTACTGTTTCTTCCTCTGTCAAGGATAGTACACTTGTTACTCAAACGTAC
AGTTCCATTCTGAACGACACTCGTGCTGGTATTGACGATGCCGCCATTTT
CAAAGTATTTGGAGCTGCGCTTCCTGCAGACCTTTTTGTCTCTCTCAAAG
AGTCATGGACTGAGTTGGAAATAGATATCAAGGAATTCAAAGAGTAG
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protein sequence of Gvermi12478.t1

>Gvermi12478.t1 ID=Gvermi12478.t1|Name=Gvermi12478.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=649bp
MATELSPPKNTAETLDNLSATTGALIDAFDQIITLPFVDSLRIDALGELS
IADVVLDLKQKYQELQGNTLPFARTLYAYAGLQLQTIPTINAGLDLSTYL
NLHKLIIARHKLEASNVKKQSETFRKTFVATLDVFESTIKELGEQIQDLE
KQIQDTKDLQEKERAVAIIAGIFTFIFTVVAILAIVATAGAVGPAASSAT
STIAVQGSASVGFFTALGSSIGAAAGTSGLIAVSAAASTAALGGLAETIV
SSIEARNFARAVSALETLKESAETARDHLLEVVNLMTVIENSLEDIVSVW
TDVESSLSIIQSDVDNWNDENFSEELVASTLEEWEDVRTAVAKYTAVVSG
DRSLNLEKQSDVHLPADEIINLTRSFAISELQSNLHAPDIEFEGKLSDLC
QMRSALETTKSLPNIRDTLKSQVTAALGHFGEVQTGLEQSSDELASFTKQ
RLAWLDAFEIAEVTKRIDMVAQLEAAVENFEVGIARAQETEAKAFLFQTS
VGLVISTLIRIINENNVKQHALKKELEKLEKDRKRRKWLWVVPVAGAVNE
IVDAANNIRGKIKRGRREIRLISNSCQQLRKLSSTVSSSVKDSTLVTQTY
SSILNDTRAGIDDAAIFKVFGAALPADLFVSLKESWTELEIDIKEFKE*
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mRNA from alignment at ScGOVlb_3404:5152839..5154785+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12478.t1 ID=Gvermi12478.t1|Name=Gvermi12478.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1947bp|location=Sequence derived from alignment at ScGOVlb_3404:5152839..5154785+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCACGGAACTTTCTCCCCCGAAGAACACCGCAGAGACTCTCGATAA
TCTCTCCGCCACTACAGGTGCTCTGATAGATGCATTTGATCAGATTATTA
CACTGCCTTTCGTCGACTCTTTGAGAATCGACGCTCTCGGTGAATTGTCT
ATTGCAGATGTCGTGCTCGATCTGAAACAGAAGTATCAAGAATTGCAGGG
AAATACGTTACCATTCGCTCGAACCTTATATGCGTATGCTGGTCTTCAGC
TGCAAACCATTCCTACCATCAATGCTGGCTTGGATTTGAGCACCTACCTC
AACCTCCACAAACTTATCATCGCGAGGCACAAGCTTGAGGCATCCAACGT
CAAGAAACAAAGCGAAACCTTTCGCAAAACATTTGTCGCAACTCTGGACG
TTTTTGAAAGCACAATAAAAGAGCTCGGCGAACAAATTCAAGATCTTGAA
AAGCAGATTCAGGATACGAAGGATCTTCAGGAGAAGGAGCGAGCTGTCGC
TATTATAGCCGGCATCTTCACATTTATCTTCACTGTGGTAGCCATCTTGG
CAATTGTCGCAACAGCGGGAGCTGTGGGTCCCGCGGCCAGCTCTGCCACA
TCCACTATAGCCGTTCAGGGTAGTGCGTCTGTGGGATTCTTTACAGCTCT
GGGTTCTTCCATAGGAGCTGCAGCAGGCACATCAGGACTTATTGCCGTAT
CTGCAGCTGCTTCAACAGCTGCTCTCGGTGGCCTGGCAGAAACGATTGTC
TCTTCAATCGAAGCTCGTAATTTCGCAAGAGCTGTATCTGCGCTCGAGAC
TCTTAAAGAAAGTGCCGAAACCGCCCGAGACCATCTTCTGGAAGTCGTTA
ACCTCATGACTGTCATTGAAAATTCGCTGGAAGATATTGTATCTGTGTGG
ACTGATGTTGAGAGTTCACTCAGCATTATTCAAAGCGATGTCGATAATTG
GAACGACGAAAACTTTTCTGAGGAACTGGTGGCATCTACGCTTGAGGAAT
GGGAAGATGTCCGCACCGCAGTTGCGAAGTATACTGCGGTCGTTTCTGGG
GATCGAAGTTTAAATTTGGAGAAACAGTCAGATGTCCATCTGCCTGCCGA
CGAAATCATCAATTTGACACGGAGCTTTGCAATTTCCGAACTGCAATCAA
ACCTTCACGCACCGGACATTGAATTCGAAGGCAAGCTTTCAGACCTTTGT
CAAATGCGTTCGGCGCTCGAAACAACAAAATCGTTACCAAATATCCGGGA
CACTCTGAAATCCCAGGTTACAGCCGCGTTGGGGCATTTTGGTGAAGTAC
AAACAGGCCTGGAGCAGTCGTCAGATGAATTAGCCAGTTTCACAAAACAA
CGTCTGGCATGGCTCGATGCTTTTGAAATTGCTGAAGTGACCAAAAGGAT
TGATATGGTGGCTCAACTCGAAGCAGCAGTTGAGAATTTTGAGGTTGGTA
TTGCTCGTGCCCAAGAAACTGAAGCAAAGGCATTCCTATTCCAAACGTCA
GTTGGTCTCGTGATTAGCACCCTTATCCGCATCATTAATGAAAATAATGT
GAAGCAGCATGCTCTCAAAAAGGAACTGGAAAAATTGGAAAAAGACCGAA
AGCGCAGGAAGTGGCTTTGGGTTGTACCGGTGGCTGGGGCTGTCAATGAA
ATCGTTGATGCGGCGAATAACATTCGGGGAAAAATCAAGAGAGGTCGGCG
AGAAATACGGCTAATATCGAACAGTTGTCAGCAGCTCCGCAAACTAAGCA
GTACTGTTTCTTCCTCTGTCAAGGATAGTACACTTGTTACTCAAACGTAC
AGTTCCATTCTGAACGACACTCGTGCTGGTATTGACGATGCCGCCATTTT
CAAAGTATTTGGAGCTGCGCTTCCTGCAGACCTTTTTGTCTCTCTCAAAG
AGTCATGGACTGAGTTGGAAATAGATATCAAGGAATTCAAAGAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:5152839..5154785+

>Gvermi12478.t1 ID=Gvermi12478.t1|Name=Gvermi12478.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1947bp|location=Sequence derived from alignment at ScGOVlb_3404:5152839..5154785+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCACGGAACTTTCTCCCCCGAAGAACACCGCAGAGACTCTCGATAA
TCTCTCCGCCACTACAGGTGCTCTGATAGATGCATTTGATCAGATTATTA
CACTGCCTTTCGTCGACTCTTTGAGAATCGACGCTCTCGGTGAATTGTCT
ATTGCAGATGTCGTGCTCGATCTGAAACAGAAGTATCAAGAATTGCAGGG
AAATACGTTACCATTCGCTCGAACCTTATATGCGTATGCTGGTCTTCAGC
TGCAAACCATTCCTACCATCAATGCTGGCTTGGATTTGAGCACCTACCTC
AACCTCCACAAACTTATCATCGCGAGGCACAAGCTTGAGGCATCCAACGT
CAAGAAACAAAGCGAAACCTTTCGCAAAACATTTGTCGCAACTCTGGACG
TTTTTGAAAGCACAATAAAAGAGCTCGGCGAACAAATTCAAGATCTTGAA
AAGCAGATTCAGGATACGAAGGATCTTCAGGAGAAGGAGCGAGCTGTCGC
TATTATAGCCGGCATCTTCACATTTATCTTCACTGTGGTAGCCATCTTGG
CAATTGTCGCAACAGCGGGAGCTGTGGGTCCCGCGGCCAGCTCTGCCACA
TCCACTATAGCCGTTCAGGGTAGTGCGTCTGTGGGATTCTTTACAGCTCT
GGGTTCTTCCATAGGAGCTGCAGCAGGCACATCAGGACTTATTGCCGTAT
CTGCAGCTGCTTCAACAGCTGCTCTCGGTGGCCTGGCAGAAACGATTGTC
TCTTCAATCGAAGCTCGTAATTTCGCAAGAGCTGTATCTGCGCTCGAGAC
TCTTAAAGAAAGTGCCGAAACCGCCCGAGACCATCTTCTGGAAGTCGTTA
ACCTCATGACTGTCATTGAAAATTCGCTGGAAGATATTGTATCTGTGTGG
ACTGATGTTGAGAGTTCACTCAGCATTATTCAAAGCGATGTCGATAATTG
GAACGACGAAAACTTTTCTGAGGAACTGGTGGCATCTACGCTTGAGGAAT
GGGAAGATGTCCGCACCGCAGTTGCGAAGTATACTGCGGTCGTTTCTGGG
GATCGAAGTTTAAATTTGGAGAAACAGTCAGATGTCCATCTGCCTGCCGA
CGAAATCATCAATTTGACACGGAGCTTTGCAATTTCCGAACTGCAATCAA
ACCTTCACGCACCGGACATTGAATTCGAAGGCAAGCTTTCAGACCTTTGT
CAAATGCGTTCGGCGCTCGAAACAACAAAATCGTTACCAAATATCCGGGA
CACTCTGAAATCCCAGGTTACAGCCGCGTTGGGGCATTTTGGTGAAGTAC
AAACAGGCCTGGAGCAGTCGTCAGATGAATTAGCCAGTTTCACAAAACAA
CGTCTGGCATGGCTCGATGCTTTTGAAATTGCTGAAGTGACCAAAAGGAT
TGATATGGTGGCTCAACTCGAAGCAGCAGTTGAGAATTTTGAGGTTGGTA
TTGCTCGTGCCCAAGAAACTGAAGCAAAGGCATTCCTATTCCAAACGTCA
GTTGGTCTCGTGATTAGCACCCTTATCCGCATCATTAATGAAAATAATGT
GAAGCAGCATGCTCTCAAAAAGGAACTGGAAAAATTGGAAAAAGACCGAA
AGCGCAGGAAGTGGCTTTGGGTTGTACCGGTGGCTGGGGCTGTCAATGAA
ATCGTTGATGCGGCGAATAACATTCGGGGAAAAATCAAGAGAGGTCGGCG
AGAAATACGGCTAATATCGAACAGTTGTCAGCAGCTCCGCAAACTAAGCA
GTACTGTTTCTTCCTCTGTCAAGGATAGTACACTTGTTACTCAAACGTAC
AGTTCCATTCTGAACGACACTCGTGCTGGTATTGACGATGCCGCCATTTT
CAAAGTATTTGGAGCTGCGCTTCCTGCAGACCTTTTTGTCTCTCTCAAAG
AGTCATGGACTGAGTTGGAAATAGATATCAAGGAATTCAAAGAGTAG
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