Gvermi871.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi871.t1
Unique NameGvermi871.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length166
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:751883..752456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708955.1
PFAMsAlba
Max annot lvl2759|Eukaryota
Evalue1.99e-18
EggNOG OGs2CZ1U@1|root,2S7WJ@2759|Eukaryota
DescriptionAlba
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi871Gvermi871Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 751883..752456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi871.t1Gvermi871.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 751883..752456 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi871.t1.stop1Gvermi871.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 751883..751885 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi871.t1.CDS1Gvermi871.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 751883..752088 -
Gvermi871.t1.CDS2Gvermi871.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 752165..752456 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi871.t1.exon1Gvermi871.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 751883..752088 -
Gvermi871.t1.exon2Gvermi871.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 752165..752456 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi871.t1.intron1Gvermi871.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2952 752089..752164 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi871.t1.start1Gvermi871.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 752454..752456 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi871.t1 ID=Gvermi871.t1|Name=Gvermi871.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=166bp
MAPSSTVVSVAPDDAALDTGAKLAVESKPQPAPQQNGRACRRIQVSREKR
PIHFFVALAKKFLNSDSQIELSGLGLAVVNVVTIAELLREAGIAKIDEIR
TSLVEATKGHSSTPKAKIQIWLSHVDEVHEQDNCTNKRVDSSPEHAGDTN
PRVNSDDVPTPSKTS*
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spliced messenger RNA

>Gvermi871.t1 ID=Gvermi871.t1|Name=Gvermi871.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=498bp|location=Sequence derived from alignment at ScGOVlb_2952:751883..752456- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCCCTCTTCTACCGTCGTTTCTGTCGCTCCCGATGACGCTGCACT
TGATACCGGTGCCAAGCTTGCTGTCGAATCCAAGCCACAACCCGCGCCGC
AACAGAATGGGCGCGCTTGTCGCCGCATTCAAGTCTCGCGTGAGAAGCGG
CCTATCCACTTCTTCGTCGCTCTTGCAAAGAAGTTTTTAAATTCCGACTC
GCAAATTGAGTTGAGCGGCTTGGGATTGGCCGTGGTCAACGTTGTAACAA
TCGCCGAGCTTCTGCGAGAAGCAGGTATTGCAAAGATTGATGAAATTCGG
ACATCATTGGTAGAAGCTACAAAAGGACACTCATCAACTCCAAAGGCGAA
GATCCAGATATGGCTTTCTCACGTCGATGAAGTGCATGAGCAAGATAACT
GTACTAACAAGCGTGTAGATTCGTCTCCGGAACACGCGGGCGACACCAAT
CCACGCGTCAACTCAGACGACGTTCCCACTCCTTCAAAAACCTCGTGA
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protein sequence of Gvermi871.t1

>Gvermi871.t1 ID=Gvermi871.t1|Name=Gvermi871.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=166bp
MAPSSTVVSVAPDDAALDTGAKLAVESKPQPAPQQNGRACRRIQVSREKR
PIHFFVALAKKFLNSDSQIELSGLGLAVVNVVTIAELLREAGIAKIDEIR
TSLVEATKGHSSTPKAKIQIWLSHVDEVHEQDNCTNKRVDSSPEHAGDTN
PRVNSDDVPTPSKTS*
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mRNA from alignment at ScGOVlb_2952:751883..752456-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi871.t1 ID=Gvermi871.t1|Name=Gvermi871.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=574bp|location=Sequence derived from alignment at ScGOVlb_2952:751883..752456- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCCCCTCTTCTACCGTCGTTTCTGTCGCTCCCGATGACGCTGCACT
TGATACCGGTGCCAAGCTTGCTGTCGAATCCAAGCCACAACCCGCGCCGC
AACAGAATGGGCGCGCTTGTCGCCGCATTCAAGTCTCGCGTGAGAAGCGG
CCTATCCACTTCTTCGTCGCTCTTGCAAAGAAGTTTTTAAATTCCGACTC
GCAAATTGAGTTGAGCGGCTTGGGATTGGCCGTGGTCAACGTTGTAACAA
TCGCCGAGCTTCTGCGAGAAGCAGGTATTGCAAAGATTGATGGTACGTAC
TCTTCAACTGCACCGTGGGGCAAACGTGTTTCTGACCATGGCATTGTTCT
TTTCATGAGCGTTTACAGAAATTCGGACATCATTGGTAGAAGCTACAAAA
GGACACTCATCAACTCCAAAGGCGAAGATCCAGATATGGCTTTCTCACGT
CGATGAAGTGCATGAGCAAGATAACTGTACTAACAAGCGTGTAGATTCGT
CTCCGGAACACGCGGGCGACACCAATCCACGCGTCAACTCAGACGACGTT
CCCACTCCTTCAAAAACCTCGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:751883..752456-

>Gvermi871.t1 ID=Gvermi871.t1|Name=Gvermi871.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=498bp|location=Sequence derived from alignment at ScGOVlb_2952:751883..752456- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCCCCTCTTCTACCGTCGTTTCTGTCGCTCCCGATGACGCTGCACT
TGATACCGGTGCCAAGCTTGCTGTCGAATCCAAGCCACAACCCGCGCCGC
AACAGAATGGGCGCGCTTGTCGCCGCATTCAAGTCTCGCGTGAGAAGCGG
CCTATCCACTTCTTCGTCGCTCTTGCAAAGAAGTTTTTAAATTCCGACTC
GCAAATTGAGTTGAGCGGCTTGGGATTGGCCGTGGTCAACGTTGTAACAA
TCGCCGAGCTTCTGCGAGAAGCAGGTATTGCAAAGATTGATGAAATTCGG
ACATCATTGGTAGAAGCTACAAAAGGACACTCATCAACTCCAAAGGCGAA
GATCCAGATATGGCTTTCTCACGTCGATGAAGTGCATGAGCAAGATAACT
GTACTAACAAGCGTGTAGATTCGTCTCCGGAACACGCGGGCGACACCAAT
CCACGCGTCAACTCAGACGACGTTCCCACTCCTTCAAAAACCTCGTGA
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