Gvermi865.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi865.t1
Unique NameGvermi865.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length557
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:729465..731135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi865Gvermi865Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 729465..731135 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi865.t1.start1Gvermi865.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 729465..729467 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi865.t1.CDS1Gvermi865.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 729465..731135 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi865.t1.exon1Gvermi865.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 729465..731135 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi865.t1.stop1Gvermi865.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 731133..731135 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi865.t1Gvermi865.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 729465..731135 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi865.t1 ID=Gvermi865.t1|Name=Gvermi865.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=557bp
MKIVIRLMQIAAENHSQCAQVLTFARKHLSFHLIMLELHPESLSNAPFHS
AVALHFLPAARNALYVEGRHTGEASAALSEISDPVCQFLCCSILFVDTNR
DSFFKVLGLDAFRSVLSRESLPHILKFISFVKPVVRSLHMSPMSAGLIPT
VTEPMTSMVRALSSSLHHLTVYLPDDQMVQVIQNANFALPALEELRIVLC
GQHIREYNPPEASDAIHGFLEKIEFMCPKLKHLSWQNVRVNGAYDVQIRR
LPRLVKHIVIIGDTTLVENFHSCVGLRAITIHAANIDLDKFFDFEREGGL
PQLKRVNFVSCTFTSSPCELHRASLRLRSCVRTIMNNPLQAAVHFPVERL
PELAFDLPCVEVVDLHLNTEADKYICELLGTVVERLDCLKSFTVRLLDSW
LCAGNVQFFKQLFQCLIESKSQLEHLCMPNVWVCIDVLRPYLVRKGKPLK
TLDVKLHSSTFAQNGKGAMLSVTEVSATLHHVRQFCPGISSVCFGDEQRV
RQLLETERSLFGGCGASGEDDAARRMLDKLVMPFDRQRVYWKVYQDGLRG
VCDSGV*
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spliced messenger RNA

>Gvermi865.t1 ID=Gvermi865.t1|Name=Gvermi865.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1671bp|location=Sequence derived from alignment at ScGOVlb_2952:729465..731135+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGATAGTGATAAGACTGATGCAAATCGCGGCTGAAAACCATTCACA
ATGCGCTCAAGTGCTCACTTTCGCACGGAAACATCTTAGCTTTCACCTCA
TCATGCTCGAGCTGCACCCCGAGTCTCTATCGAACGCACCGTTTCACAGT
GCAGTTGCGCTTCATTTTCTGCCTGCTGCTCGCAACGCCCTATACGTTGA
GGGACGGCATACGGGCGAAGCTAGCGCGGCCCTCTCCGAAATCAGCGACC
CCGTTTGTCAGTTTCTTTGCTGCTCCATCCTTTTCGTAGACACAAACAGA
GACTCTTTCTTCAAAGTGCTGGGCTTGGATGCGTTTCGCAGTGTCCTCTC
CCGTGAATCATTACCTCATATTCTCAAGTTTATCAGCTTTGTCAAACCCG
TTGTACGCTCTCTCCACATGTCACCAATGAGCGCGGGTCTCATTCCGACC
GTGACGGAGCCCATGACTAGTATGGTTCGCGCCCTTTCCTCGTCCCTTCA
TCATTTGACCGTGTATCTGCCGGATGATCAGATGGTGCAAGTTATACAAA
ATGCCAACTTTGCACTACCAGCTTTGGAGGAACTTCGCATTGTGCTTTGC
GGGCAACACATACGCGAGTATAACCCGCCCGAAGCCTCCGATGCCATCCA
CGGTTTTCTTGAAAAGATTGAGTTCATGTGCCCAAAGCTAAAGCACCTCT
CTTGGCAGAATGTGAGGGTCAACGGTGCGTACGACGTGCAAATCAGAAGG
CTTCCTCGCCTTGTGAAGCACATTGTGATCATTGGAGATACGACGCTGGT
AGAAAATTTTCATTCTTGTGTCGGGTTGCGCGCAATTACAATCCATGCGG
CCAACATCGACCTTGACAAGTTTTTTGACTTTGAGCGCGAGGGCGGGTTG
CCGCAACTGAAGCGCGTTAACTTTGTGAGCTGCACTTTCACATCTTCCCC
TTGCGAGTTGCATCGTGCGTCACTACGCCTGAGAAGTTGTGTGCGGACGA
TAATGAACAATCCATTGCAGGCTGCTGTACACTTTCCAGTAGAGAGATTG
CCAGAGCTTGCGTTTGACCTTCCGTGTGTTGAGGTGGTAGACTTGCATTT
GAACACGGAGGCCGACAAATACATCTGCGAACTGCTTGGGACGGTGGTGG
AGAGGCTGGACTGTCTGAAATCGTTCACGGTGCGATTACTGGACAGCTGG
CTGTGCGCCGGGAACGTGCAGTTTTTCAAGCAACTGTTCCAGTGCTTGAT
TGAAAGCAAGAGTCAACTCGAGCACCTGTGTATGCCAAATGTATGGGTGT
GCATCGACGTGCTGCGGCCATATCTTGTGCGGAAAGGAAAGCCATTGAAG
ACTCTTGACGTGAAGCTGCACTCGTCGACGTTTGCACAAAACGGAAAGGG
CGCCATGTTGAGTGTGACGGAAGTATCTGCGACACTGCACCACGTGCGGC
AGTTCTGCCCAGGGATTTCGAGTGTGTGCTTCGGGGATGAGCAGCGCGTA
AGGCAGTTGTTGGAGACGGAGCGGAGTTTGTTCGGTGGGTGTGGTGCTTC
CGGGGAGGATGATGCGGCGAGGCGGATGTTGGACAAGTTGGTGATGCCGT
TTGACAGACAGCGGGTATACTGGAAAGTGTACCAAGATGGTTTGCGGGGT
GTGTGTGATTCGGGTGTCTGA
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protein sequence of Gvermi865.t1

>Gvermi865.t1 ID=Gvermi865.t1|Name=Gvermi865.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=557bp
MKIVIRLMQIAAENHSQCAQVLTFARKHLSFHLIMLELHPESLSNAPFHS
AVALHFLPAARNALYVEGRHTGEASAALSEISDPVCQFLCCSILFVDTNR
DSFFKVLGLDAFRSVLSRESLPHILKFISFVKPVVRSLHMSPMSAGLIPT
VTEPMTSMVRALSSSLHHLTVYLPDDQMVQVIQNANFALPALEELRIVLC
GQHIREYNPPEASDAIHGFLEKIEFMCPKLKHLSWQNVRVNGAYDVQIRR
LPRLVKHIVIIGDTTLVENFHSCVGLRAITIHAANIDLDKFFDFEREGGL
PQLKRVNFVSCTFTSSPCELHRASLRLRSCVRTIMNNPLQAAVHFPVERL
PELAFDLPCVEVVDLHLNTEADKYICELLGTVVERLDCLKSFTVRLLDSW
LCAGNVQFFKQLFQCLIESKSQLEHLCMPNVWVCIDVLRPYLVRKGKPLK
TLDVKLHSSTFAQNGKGAMLSVTEVSATLHHVRQFCPGISSVCFGDEQRV
RQLLETERSLFGGCGASGEDDAARRMLDKLVMPFDRQRVYWKVYQDGLRG
VCDSGV*
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mRNA from alignment at ScGOVlb_2952:729465..731135+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi865.t1 ID=Gvermi865.t1|Name=Gvermi865.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1671bp|location=Sequence derived from alignment at ScGOVlb_2952:729465..731135+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGATAGTGATAAGACTGATGCAAATCGCGGCTGAAAACCATTCACA
ATGCGCTCAAGTGCTCACTTTCGCACGGAAACATCTTAGCTTTCACCTCA
TCATGCTCGAGCTGCACCCCGAGTCTCTATCGAACGCACCGTTTCACAGT
GCAGTTGCGCTTCATTTTCTGCCTGCTGCTCGCAACGCCCTATACGTTGA
GGGACGGCATACGGGCGAAGCTAGCGCGGCCCTCTCCGAAATCAGCGACC
CCGTTTGTCAGTTTCTTTGCTGCTCCATCCTTTTCGTAGACACAAACAGA
GACTCTTTCTTCAAAGTGCTGGGCTTGGATGCGTTTCGCAGTGTCCTCTC
CCGTGAATCATTACCTCATATTCTCAAGTTTATCAGCTTTGTCAAACCCG
TTGTACGCTCTCTCCACATGTCACCAATGAGCGCGGGTCTCATTCCGACC
GTGACGGAGCCCATGACTAGTATGGTTCGCGCCCTTTCCTCGTCCCTTCA
TCATTTGACCGTGTATCTGCCGGATGATCAGATGGTGCAAGTTATACAAA
ATGCCAACTTTGCACTACCAGCTTTGGAGGAACTTCGCATTGTGCTTTGC
GGGCAACACATACGCGAGTATAACCCGCCCGAAGCCTCCGATGCCATCCA
CGGTTTTCTTGAAAAGATTGAGTTCATGTGCCCAAAGCTAAAGCACCTCT
CTTGGCAGAATGTGAGGGTCAACGGTGCGTACGACGTGCAAATCAGAAGG
CTTCCTCGCCTTGTGAAGCACATTGTGATCATTGGAGATACGACGCTGGT
AGAAAATTTTCATTCTTGTGTCGGGTTGCGCGCAATTACAATCCATGCGG
CCAACATCGACCTTGACAAGTTTTTTGACTTTGAGCGCGAGGGCGGGTTG
CCGCAACTGAAGCGCGTTAACTTTGTGAGCTGCACTTTCACATCTTCCCC
TTGCGAGTTGCATCGTGCGTCACTACGCCTGAGAAGTTGTGTGCGGACGA
TAATGAACAATCCATTGCAGGCTGCTGTACACTTTCCAGTAGAGAGATTG
CCAGAGCTTGCGTTTGACCTTCCGTGTGTTGAGGTGGTAGACTTGCATTT
GAACACGGAGGCCGACAAATACATCTGCGAACTGCTTGGGACGGTGGTGG
AGAGGCTGGACTGTCTGAAATCGTTCACGGTGCGATTACTGGACAGCTGG
CTGTGCGCCGGGAACGTGCAGTTTTTCAAGCAACTGTTCCAGTGCTTGAT
TGAAAGCAAGAGTCAACTCGAGCACCTGTGTATGCCAAATGTATGGGTGT
GCATCGACGTGCTGCGGCCATATCTTGTGCGGAAAGGAAAGCCATTGAAG
ACTCTTGACGTGAAGCTGCACTCGTCGACGTTTGCACAAAACGGAAAGGG
CGCCATGTTGAGTGTGACGGAAGTATCTGCGACACTGCACCACGTGCGGC
AGTTCTGCCCAGGGATTTCGAGTGTGTGCTTCGGGGATGAGCAGCGCGTA
AGGCAGTTGTTGGAGACGGAGCGGAGTTTGTTCGGTGGGTGTGGTGCTTC
CGGGGAGGATGATGCGGCGAGGCGGATGTTGGACAAGTTGGTGATGCCGT
TTGACAGACAGCGGGTATACTGGAAAGTGTACCAAGATGGTTTGCGGGGT
GTGTGTGATTCGGGTGTCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:729465..731135+

>Gvermi865.t1 ID=Gvermi865.t1|Name=Gvermi865.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1671bp|location=Sequence derived from alignment at ScGOVlb_2952:729465..731135+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGATAGTGATAAGACTGATGCAAATCGCGGCTGAAAACCATTCACA
ATGCGCTCAAGTGCTCACTTTCGCACGGAAACATCTTAGCTTTCACCTCA
TCATGCTCGAGCTGCACCCCGAGTCTCTATCGAACGCACCGTTTCACAGT
GCAGTTGCGCTTCATTTTCTGCCTGCTGCTCGCAACGCCCTATACGTTGA
GGGACGGCATACGGGCGAAGCTAGCGCGGCCCTCTCCGAAATCAGCGACC
CCGTTTGTCAGTTTCTTTGCTGCTCCATCCTTTTCGTAGACACAAACAGA
GACTCTTTCTTCAAAGTGCTGGGCTTGGATGCGTTTCGCAGTGTCCTCTC
CCGTGAATCATTACCTCATATTCTCAAGTTTATCAGCTTTGTCAAACCCG
TTGTACGCTCTCTCCACATGTCACCAATGAGCGCGGGTCTCATTCCGACC
GTGACGGAGCCCATGACTAGTATGGTTCGCGCCCTTTCCTCGTCCCTTCA
TCATTTGACCGTGTATCTGCCGGATGATCAGATGGTGCAAGTTATACAAA
ATGCCAACTTTGCACTACCAGCTTTGGAGGAACTTCGCATTGTGCTTTGC
GGGCAACACATACGCGAGTATAACCCGCCCGAAGCCTCCGATGCCATCCA
CGGTTTTCTTGAAAAGATTGAGTTCATGTGCCCAAAGCTAAAGCACCTCT
CTTGGCAGAATGTGAGGGTCAACGGTGCGTACGACGTGCAAATCAGAAGG
CTTCCTCGCCTTGTGAAGCACATTGTGATCATTGGAGATACGACGCTGGT
AGAAAATTTTCATTCTTGTGTCGGGTTGCGCGCAATTACAATCCATGCGG
CCAACATCGACCTTGACAAGTTTTTTGACTTTGAGCGCGAGGGCGGGTTG
CCGCAACTGAAGCGCGTTAACTTTGTGAGCTGCACTTTCACATCTTCCCC
TTGCGAGTTGCATCGTGCGTCACTACGCCTGAGAAGTTGTGTGCGGACGA
TAATGAACAATCCATTGCAGGCTGCTGTACACTTTCCAGTAGAGAGATTG
CCAGAGCTTGCGTTTGACCTTCCGTGTGTTGAGGTGGTAGACTTGCATTT
GAACACGGAGGCCGACAAATACATCTGCGAACTGCTTGGGACGGTGGTGG
AGAGGCTGGACTGTCTGAAATCGTTCACGGTGCGATTACTGGACAGCTGG
CTGTGCGCCGGGAACGTGCAGTTTTTCAAGCAACTGTTCCAGTGCTTGAT
TGAAAGCAAGAGTCAACTCGAGCACCTGTGTATGCCAAATGTATGGGTGT
GCATCGACGTGCTGCGGCCATATCTTGTGCGGAAAGGAAAGCCATTGAAG
ACTCTTGACGTGAAGCTGCACTCGTCGACGTTTGCACAAAACGGAAAGGG
CGCCATGTTGAGTGTGACGGAAGTATCTGCGACACTGCACCACGTGCGGC
AGTTCTGCCCAGGGATTTCGAGTGTGTGCTTCGGGGATGAGCAGCGCGTA
AGGCAGTTGTTGGAGACGGAGCGGAGTTTGTTCGGTGGGTGTGGTGCTTC
CGGGGAGGATGATGCGGCGAGGCGGATGTTGGACAAGTTGGTGATGCCGT
TTGACAGACAGCGGGTATACTGGAAAGTGTACCAAGATGGTTTGCGGGGT
GTGTGTGATTCGGGTGTCTGA
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