Gvermi768.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi768.t1
Unique NameGvermi768.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length269
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:24657..25463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707378.1
Preferred nameRPS3a
PFAMsRibosomal_S3Ae
Max annot lvl2759|Eukaryota
KEGG rclassRC00434
KEGG koko:K01807,ko:K02984
KEGG ReactionR01056
KEGG Pathwayko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03010,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map03010
KEGG ModuleM00004,M00007,M00165,M00167,M00177,M00179,M00580
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0055044,GO:0070013,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue8.21e-123
EggNOG OGsCOG1890@1|root,KOG1628@2759|Eukaryota
EC5.3.1.6
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi768Gvermi768Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 24657..25463 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi768.t1.stop1Gvermi768.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 24657..24659 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi768.t1.CDS1Gvermi768.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 24657..25463 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi768.t1.exon1Gvermi768.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 24657..25463 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi768.t1.start1Gvermi768.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 25461..25463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi768.t1Gvermi768.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 24657..25463 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi768.t1 ID=Gvermi768.t1|Name=Gvermi768.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=269bp
MMVQAVGKNKRLSKKGKGSRKKVMDPFLRKEWYDVKAPSIFNVRQVGKTL
VSRTQGTKIASEALKGRIYEVILADLQKSEDMAYRKIRLKCEEVQGRSCL
TNFHGMDLTRDKLCSLVRKWQTIIEAHVDVKTTDGYFLRMFAIGFTKRRD
GQVKKTTYAQTSQIREIRAKMVEIMARDASECDLKELVRKFIPEVIGKEI
IKATSGIYPLRDVHIRKVKILKAPKFDITKLMELHEAGGASEDVGAPVET
APEEPAAPQEPIPGDIPA*
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spliced messenger RNA

>Gvermi768.t1 ID=Gvermi768.t1|Name=Gvermi768.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=807bp|location=Sequence derived from alignment at ScGOVlb_2952:24657..25463- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGTGCAGGCTGTTGGGAAGAATAAGCGTTTATCAAAGAAGGGTAA
AGGATCTCGCAAGAAGGTGATGGACCCCTTCCTGCGTAAGGAATGGTATG
ATGTCAAAGCCCCCTCTATCTTCAACGTGCGTCAAGTCGGAAAAACTCTC
GTTTCTCGCACCCAAGGTACAAAGATCGCTTCAGAAGCACTGAAAGGCCG
CATTTACGAAGTCATTCTTGCTGATCTTCAAAAATCTGAAGATATGGCTT
ACCGCAAGATTCGCCTGAAGTGCGAGGAGGTTCAAGGTCGATCTTGTTTA
ACGAATTTCCACGGAATGGATCTCACAAGAGATAAACTTTGTTCTCTTGT
GCGTAAGTGGCAAACTATTATTGAGGCTCATGTCGACGTCAAAACTACCG
ACGGATATTTTTTGCGGATGTTCGCCATTGGTTTCACAAAGCGTCGTGAC
GGCCAAGTTAAGAAGACAACCTATGCTCAGACCAGTCAAATCCGCGAAAT
TCGTGCCAAGATGGTTGAAATTATGGCACGCGACGCATCTGAATGTGATC
TTAAGGAGCTTGTTAGAAAGTTTATTCCTGAAGTTATCGGTAAGGAGATA
ATCAAAGCCACCTCGGGTATTTACCCTCTCAGGGACGTTCACATTAGAAA
GGTCAAGATCTTGAAAGCTCCGAAGTTTGACATTACTAAACTGATGGAAC
TTCATGAAGCAGGTGGAGCGTCTGAGGATGTGGGCGCTCCAGTGGAAACC
GCTCCTGAGGAGCCCGCCGCTCCTCAGGAGCCAATTCCTGGAGATATTCC
AGCGTAA
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protein sequence of Gvermi768.t1

>Gvermi768.t1 ID=Gvermi768.t1|Name=Gvermi768.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=269bp
MMVQAVGKNKRLSKKGKGSRKKVMDPFLRKEWYDVKAPSIFNVRQVGKTL
VSRTQGTKIASEALKGRIYEVILADLQKSEDMAYRKIRLKCEEVQGRSCL
TNFHGMDLTRDKLCSLVRKWQTIIEAHVDVKTTDGYFLRMFAIGFTKRRD
GQVKKTTYAQTSQIREIRAKMVEIMARDASECDLKELVRKFIPEVIGKEI
IKATSGIYPLRDVHIRKVKILKAPKFDITKLMELHEAGGASEDVGAPVET
APEEPAAPQEPIPGDIPA*
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mRNA from alignment at ScGOVlb_2952:24657..25463-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi768.t1 ID=Gvermi768.t1|Name=Gvermi768.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=807bp|location=Sequence derived from alignment at ScGOVlb_2952:24657..25463- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGGTGCAGGCTGTTGGGAAGAATAAGCGTTTATCAAAGAAGGGTAA
AGGATCTCGCAAGAAGGTGATGGACCCCTTCCTGCGTAAGGAATGGTATG
ATGTCAAAGCCCCCTCTATCTTCAACGTGCGTCAAGTCGGAAAAACTCTC
GTTTCTCGCACCCAAGGTACAAAGATCGCTTCAGAAGCACTGAAAGGCCG
CATTTACGAAGTCATTCTTGCTGATCTTCAAAAATCTGAAGATATGGCTT
ACCGCAAGATTCGCCTGAAGTGCGAGGAGGTTCAAGGTCGATCTTGTTTA
ACGAATTTCCACGGAATGGATCTCACAAGAGATAAACTTTGTTCTCTTGT
GCGTAAGTGGCAAACTATTATTGAGGCTCATGTCGACGTCAAAACTACCG
ACGGATATTTTTTGCGGATGTTCGCCATTGGTTTCACAAAGCGTCGTGAC
GGCCAAGTTAAGAAGACAACCTATGCTCAGACCAGTCAAATCCGCGAAAT
TCGTGCCAAGATGGTTGAAATTATGGCACGCGACGCATCTGAATGTGATC
TTAAGGAGCTTGTTAGAAAGTTTATTCCTGAAGTTATCGGTAAGGAGATA
ATCAAAGCCACCTCGGGTATTTACCCTCTCAGGGACGTTCACATTAGAAA
GGTCAAGATCTTGAAAGCTCCGAAGTTTGACATTACTAAACTGATGGAAC
TTCATGAAGCAGGTGGAGCGTCTGAGGATGTGGGCGCTCCAGTGGAAACC
GCTCCTGAGGAGCCCGCCGCTCCTCAGGAGCCAATTCCTGGAGATATTCC
AGCGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:24657..25463-

>Gvermi768.t1 ID=Gvermi768.t1|Name=Gvermi768.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=807bp|location=Sequence derived from alignment at ScGOVlb_2952:24657..25463- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGGTGCAGGCTGTTGGGAAGAATAAGCGTTTATCAAAGAAGGGTAA
AGGATCTCGCAAGAAGGTGATGGACCCCTTCCTGCGTAAGGAATGGTATG
ATGTCAAAGCCCCCTCTATCTTCAACGTGCGTCAAGTCGGAAAAACTCTC
GTTTCTCGCACCCAAGGTACAAAGATCGCTTCAGAAGCACTGAAAGGCCG
CATTTACGAAGTCATTCTTGCTGATCTTCAAAAATCTGAAGATATGGCTT
ACCGCAAGATTCGCCTGAAGTGCGAGGAGGTTCAAGGTCGATCTTGTTTA
ACGAATTTCCACGGAATGGATCTCACAAGAGATAAACTTTGTTCTCTTGT
GCGTAAGTGGCAAACTATTATTGAGGCTCATGTCGACGTCAAAACTACCG
ACGGATATTTTTTGCGGATGTTCGCCATTGGTTTCACAAAGCGTCGTGAC
GGCCAAGTTAAGAAGACAACCTATGCTCAGACCAGTCAAATCCGCGAAAT
TCGTGCCAAGATGGTTGAAATTATGGCACGCGACGCATCTGAATGTGATC
TTAAGGAGCTTGTTAGAAAGTTTATTCCTGAAGTTATCGGTAAGGAGATA
ATCAAAGCCACCTCGGGTATTTACCCTCTCAGGGACGTTCACATTAGAAA
GGTCAAGATCTTGAAAGCTCCGAAGTTTGACATTACTAAACTGATGGAAC
TTCATGAAGCAGGTGGAGCGTCTGAGGATGTGGGCGCTCCAGTGGAAACC
GCTCCTGAGGAGCCCGCCGCTCCTCAGGAGCCAATTCCTGGAGATATTCC
AGCGTAA
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