Gvermi868.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi868.t1
Unique NameGvermi868.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length460
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:737633..739012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42345.XP_008792793.1
PFAMsTPT
Max annot lvl35493|Streptophyta
KEGG koko:K15283
KEGG TC2.A.7.9
GOsGO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006810,GO:0006811,GO:0006820,GO:0008028,GO:0008150,GO:0008509,GO:0008514,GO:0008643,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009670,GO:0009941,GO:0015075,GO:0015120,GO:0015121,GO:0015144,GO:0015291,GO:0015297,GO:0015301,GO:0015318,GO:0015355,GO:0015605,GO:0015711,GO:0015713,GO:0015714,GO:0015717,GO:0015718,GO:0015748,GO:0015849,GO:0016020,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0034219,GO:0034220,GO:0035436,GO:0042170,GO:0042873,GO:0042879,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071917,GO:0089721,GO:0089722,GO:0098656,GO:0099516,GO:1901264,GO:1901505,GO:1903825,GO:1905039
Evalue9.7e-86
EggNOG OGsKOG1441@1|root,KOG1441@2759|Eukaryota,37IB1@33090|Viridiplantae,3GA3U@35493|Streptophyta,3KU5M@4447|Liliopsida
DescriptionTriose phosphate phosphate translocator, non-green
COG categoryEG
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi868Gvermi868Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 737633..739012 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi868.t1.start1Gvermi868.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 737633..737635 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi868.t1.CDS1Gvermi868.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 737633..739012 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi868.t1.exon1Gvermi868.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 737633..739012 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi868.t1.stop1Gvermi868.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 739010..739012 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi868.t1Gvermi868.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 737633..739012 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi868.t1 ID=Gvermi868.t1|Name=Gvermi868.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=460bp
MPSHPASDPQQQRVHPEHVDSQSPPPSANSTSASDGVSFVQLSQPTIRID
PMKKVPTSLIDASGALQIDDGSFQSIPVLPRRLVRRRKKPLDIEFLKRQL
LSGFDTGVGATIVLTLMFVTWYWANTAFNVYNKQVLKVFPYPLTCTVVQF
AVAGALMATTWLTRLKKPPKLNSFLFKAALPLACLHAVGFLLTNMSLGKV
SVAFTHTVKSTEPFFSVALTPSILGDVPTWGILASLFPIVAGVGLASLAD
ASFNWIGFLAAVGSNLALQGRNILSKRLMDVGDKTTNQKRKPQKPMTREE
EDTLMSLDNVNLFSTMSILAFFVLLPVSLLWEGVPFAAAAMALPAGLPVM
KLYTMLVMGGVCRCLDVLISYMILKRVSAVTHSVGNCVKRAVVIVASIFF
FKTKVTILSIVGTTMALVGVLIYSLIVSACKQNTFGPDSPFCKPIYEIDE
LELTEGGGI*
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spliced messenger RNA

>Gvermi868.t1 ID=Gvermi868.t1|Name=Gvermi868.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1380bp|location=Sequence derived from alignment at ScGOVlb_2952:737633..739012+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCACATCCCGCCTCCGACCCACAGCAACAACGTGTTCACCCCGA
ACACGTCGACAGCCAATCCCCTCCGCCTTCTGCTAACTCCACGTCAGCTT
CGGATGGTGTTTCTTTTGTACAGCTCTCGCAGCCTACCATTCGTATTGAC
CCCATGAAAAAGGTACCCACCTCTCTCATTGATGCTTCCGGAGCGCTGCA
GATCGACGATGGTTCTTTTCAATCAATTCCTGTCTTGCCCCGTCGTTTGG
TGCGTCGAAGGAAGAAACCGCTTGATATTGAGTTCTTGAAACGACAGTTG
CTTTCTGGCTTTGATACCGGTGTCGGTGCTACAATCGTCCTCACGCTCAT
GTTTGTCACATGGTACTGGGCCAATACCGCCTTCAATGTGTACAACAAAC
AGGTATTGAAGGTGTTTCCGTATCCCTTAACTTGCACCGTCGTTCAGTTT
GCAGTGGCGGGTGCCCTCATGGCAACCACCTGGCTTACCAGGCTCAAGAA
GCCCCCAAAGCTGAATTCCTTCCTGTTCAAGGCCGCACTGCCGTTAGCCT
GTTTGCATGCTGTTGGTTTTCTGCTCACCAATATGTCACTCGGCAAGGTA
TCTGTGGCCTTTACACACACTGTCAAGAGTACGGAGCCGTTTTTCTCCGT
AGCCCTCACGCCCTCAATCCTCGGTGATGTTCCAACCTGGGGCATTCTCG
CTTCACTTTTCCCTATTGTTGCCGGGGTCGGACTTGCCTCACTAGCAGAT
GCATCATTTAATTGGATTGGCTTCTTAGCAGCGGTGGGGAGCAACTTGGC
TTTGCAAGGGCGGAACATATTGTCGAAACGGCTGATGGATGTGGGTGACA
AAACTACTAATCAAAAAAGAAAACCTCAAAAGCCCATGACCAGAGAAGAA
GAAGATACGCTCATGTCGCTTGATAACGTCAACCTGTTCTCCACAATGTC
CATTTTAGCGTTTTTTGTGCTGCTTCCTGTGAGTCTGTTGTGGGAAGGAG
TACCATTTGCAGCTGCGGCGATGGCGCTACCAGCGGGGTTACCCGTCATG
AAGTTGTACACCATGCTCGTCATGGGTGGTGTCTGCCGATGCTTGGACGT
GCTGATCAGTTACATGATTCTCAAACGAGTCAGCGCTGTTACTCATTCGG
TCGGAAACTGCGTGAAAAGAGCTGTTGTCATTGTTGCTTCTATCTTCTTC
TTCAAGACCAAGGTAACTATTCTCAGCATTGTTGGTACCACAATGGCACT
TGTTGGGGTGTTGATTTACTCGCTCATTGTATCCGCATGCAAGCAGAATA
CGTTTGGCCCGGATTCGCCATTTTGCAAGCCAATATATGAAATTGATGAG
TTAGAGCTCACGGAAGGAGGTGGTATTTAA
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protein sequence of Gvermi868.t1

>Gvermi868.t1 ID=Gvermi868.t1|Name=Gvermi868.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=460bp
MPSHPASDPQQQRVHPEHVDSQSPPPSANSTSASDGVSFVQLSQPTIRID
PMKKVPTSLIDASGALQIDDGSFQSIPVLPRRLVRRRKKPLDIEFLKRQL
LSGFDTGVGATIVLTLMFVTWYWANTAFNVYNKQVLKVFPYPLTCTVVQF
AVAGALMATTWLTRLKKPPKLNSFLFKAALPLACLHAVGFLLTNMSLGKV
SVAFTHTVKSTEPFFSVALTPSILGDVPTWGILASLFPIVAGVGLASLAD
ASFNWIGFLAAVGSNLALQGRNILSKRLMDVGDKTTNQKRKPQKPMTREE
EDTLMSLDNVNLFSTMSILAFFVLLPVSLLWEGVPFAAAAMALPAGLPVM
KLYTMLVMGGVCRCLDVLISYMILKRVSAVTHSVGNCVKRAVVIVASIFF
FKTKVTILSIVGTTMALVGVLIYSLIVSACKQNTFGPDSPFCKPIYEIDE
LELTEGGGI*
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mRNA from alignment at ScGOVlb_2952:737633..739012+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi868.t1 ID=Gvermi868.t1|Name=Gvermi868.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1380bp|location=Sequence derived from alignment at ScGOVlb_2952:737633..739012+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTCACATCCCGCCTCCGACCCACAGCAACAACGTGTTCACCCCGA
ACACGTCGACAGCCAATCCCCTCCGCCTTCTGCTAACTCCACGTCAGCTT
CGGATGGTGTTTCTTTTGTACAGCTCTCGCAGCCTACCATTCGTATTGAC
CCCATGAAAAAGGTACCCACCTCTCTCATTGATGCTTCCGGAGCGCTGCA
GATCGACGATGGTTCTTTTCAATCAATTCCTGTCTTGCCCCGTCGTTTGG
TGCGTCGAAGGAAGAAACCGCTTGATATTGAGTTCTTGAAACGACAGTTG
CTTTCTGGCTTTGATACCGGTGTCGGTGCTACAATCGTCCTCACGCTCAT
GTTTGTCACATGGTACTGGGCCAATACCGCCTTCAATGTGTACAACAAAC
AGGTATTGAAGGTGTTTCCGTATCCCTTAACTTGCACCGTCGTTCAGTTT
GCAGTGGCGGGTGCCCTCATGGCAACCACCTGGCTTACCAGGCTCAAGAA
GCCCCCAAAGCTGAATTCCTTCCTGTTCAAGGCCGCACTGCCGTTAGCCT
GTTTGCATGCTGTTGGTTTTCTGCTCACCAATATGTCACTCGGCAAGGTA
TCTGTGGCCTTTACACACACTGTCAAGAGTACGGAGCCGTTTTTCTCCGT
AGCCCTCACGCCCTCAATCCTCGGTGATGTTCCAACCTGGGGCATTCTCG
CTTCACTTTTCCCTATTGTTGCCGGGGTCGGACTTGCCTCACTAGCAGAT
GCATCATTTAATTGGATTGGCTTCTTAGCAGCGGTGGGGAGCAACTTGGC
TTTGCAAGGGCGGAACATATTGTCGAAACGGCTGATGGATGTGGGTGACA
AAACTACTAATCAAAAAAGAAAACCTCAAAAGCCCATGACCAGAGAAGAA
GAAGATACGCTCATGTCGCTTGATAACGTCAACCTGTTCTCCACAATGTC
CATTTTAGCGTTTTTTGTGCTGCTTCCTGTGAGTCTGTTGTGGGAAGGAG
TACCATTTGCAGCTGCGGCGATGGCGCTACCAGCGGGGTTACCCGTCATG
AAGTTGTACACCATGCTCGTCATGGGTGGTGTCTGCCGATGCTTGGACGT
GCTGATCAGTTACATGATTCTCAAACGAGTCAGCGCTGTTACTCATTCGG
TCGGAAACTGCGTGAAAAGAGCTGTTGTCATTGTTGCTTCTATCTTCTTC
TTCAAGACCAAGGTAACTATTCTCAGCATTGTTGGTACCACAATGGCACT
TGTTGGGGTGTTGATTTACTCGCTCATTGTATCCGCATGCAAGCAGAATA
CGTTTGGCCCGGATTCGCCATTTTGCAAGCCAATATATGAAATTGATGAG
TTAGAGCTCACGGAAGGAGGTGGTATTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:737633..739012+

>Gvermi868.t1 ID=Gvermi868.t1|Name=Gvermi868.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1380bp|location=Sequence derived from alignment at ScGOVlb_2952:737633..739012+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTCACATCCCGCCTCCGACCCACAGCAACAACGTGTTCACCCCGA
ACACGTCGACAGCCAATCCCCTCCGCCTTCTGCTAACTCCACGTCAGCTT
CGGATGGTGTTTCTTTTGTACAGCTCTCGCAGCCTACCATTCGTATTGAC
CCCATGAAAAAGGTACCCACCTCTCTCATTGATGCTTCCGGAGCGCTGCA
GATCGACGATGGTTCTTTTCAATCAATTCCTGTCTTGCCCCGTCGTTTGG
TGCGTCGAAGGAAGAAACCGCTTGATATTGAGTTCTTGAAACGACAGTTG
CTTTCTGGCTTTGATACCGGTGTCGGTGCTACAATCGTCCTCACGCTCAT
GTTTGTCACATGGTACTGGGCCAATACCGCCTTCAATGTGTACAACAAAC
AGGTATTGAAGGTGTTTCCGTATCCCTTAACTTGCACCGTCGTTCAGTTT
GCAGTGGCGGGTGCCCTCATGGCAACCACCTGGCTTACCAGGCTCAAGAA
GCCCCCAAAGCTGAATTCCTTCCTGTTCAAGGCCGCACTGCCGTTAGCCT
GTTTGCATGCTGTTGGTTTTCTGCTCACCAATATGTCACTCGGCAAGGTA
TCTGTGGCCTTTACACACACTGTCAAGAGTACGGAGCCGTTTTTCTCCGT
AGCCCTCACGCCCTCAATCCTCGGTGATGTTCCAACCTGGGGCATTCTCG
CTTCACTTTTCCCTATTGTTGCCGGGGTCGGACTTGCCTCACTAGCAGAT
GCATCATTTAATTGGATTGGCTTCTTAGCAGCGGTGGGGAGCAACTTGGC
TTTGCAAGGGCGGAACATATTGTCGAAACGGCTGATGGATGTGGGTGACA
AAACTACTAATCAAAAAAGAAAACCTCAAAAGCCCATGACCAGAGAAGAA
GAAGATACGCTCATGTCGCTTGATAACGTCAACCTGTTCTCCACAATGTC
CATTTTAGCGTTTTTTGTGCTGCTTCCTGTGAGTCTGTTGTGGGAAGGAG
TACCATTTGCAGCTGCGGCGATGGCGCTACCAGCGGGGTTACCCGTCATG
AAGTTGTACACCATGCTCGTCATGGGTGGTGTCTGCCGATGCTTGGACGT
GCTGATCAGTTACATGATTCTCAAACGAGTCAGCGCTGTTACTCATTCGG
TCGGAAACTGCGTGAAAAGAGCTGTTGTCATTGTTGCTTCTATCTTCTTC
TTCAAGACCAAGGTAACTATTCTCAGCATTGTTGGTACCACAATGGCACT
TGTTGGGGTGTTGATTTACTCGCTCATTGTATCCGCATGCAAGCAGAATA
CGTTTGGCCCGGATTCGCCATTTTGCAAGCCAATATATGAAATTGATGAG
TTAGAGCTCACGGAAGGAGGTGGTATTTAA
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