Gvermi814.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi814.t1
Unique NameGvermi814.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length190
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:447552..448121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002502041.1
PFAMsICMT
Max annot lvl3041|Chlorophyta
KEGG rclassRC00003,RC00460
KEGG koko:K00587
KEGG ReactionR04496
KEGG Pathwayko00900,ko01130,map00900,map01130
Evalue8.35e-53
EggNOG OGsCOG2020@1|root,KOG2628@2759|Eukaryota,37P7F@33090|Viridiplantae,34I23@3041|Chlorophyta
EC2.1.1.100
DescriptionProtein-S-isoprenylcysteine O-methyltransferase
COG categoryO
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi814Gvermi814Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 447552..448121 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi814.t1.stop1Gvermi814.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 447552..447554 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi814.t1.CDS1Gvermi814.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 447552..448121 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi814.t1.exon1Gvermi814.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 447552..448121 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi814.t1.start1Gvermi814.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 448119..448121 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi814.t1Gvermi814.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 447552..448121 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi814.t1 ID=Gvermi814.t1|Name=Gvermi814.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=190bp
MHSVAIFTVSLLFYHVSELTLVYVYTPEELSPSSALVSVPYLVAMILGIL
EYQLTLKFFPGFKNFCLRALQIPAVILLALGESLRKAAWLTAKPSFTHLI
KETRRPSHDLVTHGVYAFCRHPGYLGWFLWAVGTQLLLANAVCTPAFAFI
ALKFFRERIPIEEFYLRRMFGRSYDEYRKKTPTFFPGMP*
back to top

spliced messenger RNA

>Gvermi814.t1 ID=Gvermi814.t1|Name=Gvermi814.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=570bp|location=Sequence derived from alignment at ScGOVlb_2952:447552..448121- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACTCGGTCGCAATCTTTACAGTATCGTTACTGTTCTATCACGTTTC
CGAGCTCACGCTCGTCTACGTCTACACCCCGGAGGAGCTATCGCCCTCCT
CGGCCCTTGTTTCGGTTCCCTATCTCGTTGCTATGATCCTCGGCATACTG
GAGTACCAGCTCACGCTCAAGTTCTTTCCAGGTTTTAAAAACTTTTGTCT
ACGAGCTTTGCAGATCCCAGCCGTCATCCTGCTTGCCCTAGGAGAATCAC
TGCGCAAGGCCGCCTGGTTGACTGCCAAACCCTCTTTCACGCATCTCATC
AAGGAAACGCGCCGCCCGTCTCACGACCTCGTCACACATGGTGTGTACGC
ATTCTGTCGCCATCCAGGCTATCTTGGCTGGTTCCTCTGGGCTGTTGGCA
CCCAACTTCTGCTAGCCAATGCCGTGTGCACCCCGGCTTTTGCCTTCATT
GCGTTGAAGTTCTTTCGGGAGCGTATCCCCATCGAAGAGTTTTATCTCAG
ACGCATGTTTGGAAGAAGCTACGACGAATACAGGAAAAAAACGCCCACTT
TCTTTCCCGGCATGCCTTGA
back to top

protein sequence of Gvermi814.t1

>Gvermi814.t1 ID=Gvermi814.t1|Name=Gvermi814.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=190bp
MHSVAIFTVSLLFYHVSELTLVYVYTPEELSPSSALVSVPYLVAMILGIL
EYQLTLKFFPGFKNFCLRALQIPAVILLALGESLRKAAWLTAKPSFTHLI
KETRRPSHDLVTHGVYAFCRHPGYLGWFLWAVGTQLLLANAVCTPAFAFI
ALKFFRERIPIEEFYLRRMFGRSYDEYRKKTPTFFPGMP*
back to top

mRNA from alignment at ScGOVlb_2952:447552..448121-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi814.t1 ID=Gvermi814.t1|Name=Gvermi814.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=570bp|location=Sequence derived from alignment at ScGOVlb_2952:447552..448121- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCACTCGGTCGCAATCTTTACAGTATCGTTACTGTTCTATCACGTTTC
CGAGCTCACGCTCGTCTACGTCTACACCCCGGAGGAGCTATCGCCCTCCT
CGGCCCTTGTTTCGGTTCCCTATCTCGTTGCTATGATCCTCGGCATACTG
GAGTACCAGCTCACGCTCAAGTTCTTTCCAGGTTTTAAAAACTTTTGTCT
ACGAGCTTTGCAGATCCCAGCCGTCATCCTGCTTGCCCTAGGAGAATCAC
TGCGCAAGGCCGCCTGGTTGACTGCCAAACCCTCTTTCACGCATCTCATC
AAGGAAACGCGCCGCCCGTCTCACGACCTCGTCACACATGGTGTGTACGC
ATTCTGTCGCCATCCAGGCTATCTTGGCTGGTTCCTCTGGGCTGTTGGCA
CCCAACTTCTGCTAGCCAATGCCGTGTGCACCCCGGCTTTTGCCTTCATT
GCGTTGAAGTTCTTTCGGGAGCGTATCCCCATCGAAGAGTTTTATCTCAG
ACGCATGTTTGGAAGAAGCTACGACGAATACAGGAAAAAAACGCCCACTT
TCTTTCCCGGCATGCCTTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_2952:447552..448121-

>Gvermi814.t1 ID=Gvermi814.t1|Name=Gvermi814.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=570bp|location=Sequence derived from alignment at ScGOVlb_2952:447552..448121- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCACTCGGTCGCAATCTTTACAGTATCGTTACTGTTCTATCACGTTTC
CGAGCTCACGCTCGTCTACGTCTACACCCCGGAGGAGCTATCGCCCTCCT
CGGCCCTTGTTTCGGTTCCCTATCTCGTTGCTATGATCCTCGGCATACTG
GAGTACCAGCTCACGCTCAAGTTCTTTCCAGGTTTTAAAAACTTTTGTCT
ACGAGCTTTGCAGATCCCAGCCGTCATCCTGCTTGCCCTAGGAGAATCAC
TGCGCAAGGCCGCCTGGTTGACTGCCAAACCCTCTTTCACGCATCTCATC
AAGGAAACGCGCCGCCCGTCTCACGACCTCGTCACACATGGTGTGTACGC
ATTCTGTCGCCATCCAGGCTATCTTGGCTGGTTCCTCTGGGCTGTTGGCA
CCCAACTTCTGCTAGCCAATGCCGTGTGCACCCCGGCTTTTGCCTTCATT
GCGTTGAAGTTCTTTCGGGAGCGTATCCCCATCGAAGAGTTTTATCTCAG
ACGCATGTTTGGAAGAAGCTACGACGAATACAGGAAAAAAACGCCCACTT
TCTTTCCCGGCATGCCTTGA
back to top