Gvermi803.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi803.t1
Unique NameGvermi803.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length157
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:412882..413352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7070.TC001491-PA
PFAMsBaculo_F,RVT_1,rve
Max annot lvl33208|Metazoa
Evalue8.17e-08
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria,41WI3@6656|Arthropoda,3SIRK@50557|Insecta
DescriptionK02A2.6-like
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi803Gvermi803Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 412882..413352 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi803.t1.stop1Gvermi803.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 412882..412884 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi803.t1.CDS1Gvermi803.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 412882..413352 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi803.t1.exon1Gvermi803.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 412882..413352 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi803.t1.start1Gvermi803.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 413350..413352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi803.t1Gvermi803.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 412882..413352 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi803.t1 ID=Gvermi803.t1|Name=Gvermi803.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=157bp
MFNKTIASRLKHYVAEHQKDWDAYVGLLTYAYNLQVHRSTGTAPFNLVLS
RIPPSTSIAPRATAHPADGPQAPTAAQAKRSILRRYENALSLAKERLNAS
QRSNKQDFDRKVMEGPHLKEGDEVFLDTLGKTSDEPLDITRKLMPTTSGP
YKVLAT*
back to top

spliced messenger RNA

>Gvermi803.t1 ID=Gvermi803.t1|Name=Gvermi803.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=471bp|location=Sequence derived from alignment at ScGOVlb_2952:412882..413352- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCAACAAAACCATTGCCTCGAGGCTGAAGCACTACGTCGCGGAGCA
CCAGAAGGATTGGGACGCATATGTGGGCCTCCTCACGTATGCATACAACC
TGCAGGTGCACCGCTCCACGGGGACCGCTCCTTTCAATCTGGTGCTCTCG
CGCATCCCGCCAAGTACCAGCATTGCGCCACGCGCCACGGCGCACCCGGC
AGATGGGCCACAGGCGCCAACAGCGGCGCAAGCCAAACGATCCATCCTAA
GGCGGTATGAGAACGCACTCTCCCTCGCAAAGGAGAGACTCAACGCCTCG
CAGAGGAGTAACAAACAGGACTTCGACCGAAAGGTTATGGAAGGCCCTCA
CCTGAAGGAAGGCGACGAGGTTTTCCTCGACACACTCGGGAAAACATCCG
ACGAACCGCTGGACATCACGCGCAAGTTAATGCCGACCACCTCAGGGCCC
TACAAAGTCCTGGCCACCTAA
back to top

protein sequence of Gvermi803.t1

>Gvermi803.t1 ID=Gvermi803.t1|Name=Gvermi803.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=157bp
MFNKTIASRLKHYVAEHQKDWDAYVGLLTYAYNLQVHRSTGTAPFNLVLS
RIPPSTSIAPRATAHPADGPQAPTAAQAKRSILRRYENALSLAKERLNAS
QRSNKQDFDRKVMEGPHLKEGDEVFLDTLGKTSDEPLDITRKLMPTTSGP
YKVLAT*
back to top

mRNA from alignment at ScGOVlb_2952:412882..413352-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi803.t1 ID=Gvermi803.t1|Name=Gvermi803.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=471bp|location=Sequence derived from alignment at ScGOVlb_2952:412882..413352- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCAACAAAACCATTGCCTCGAGGCTGAAGCACTACGTCGCGGAGCA
CCAGAAGGATTGGGACGCATATGTGGGCCTCCTCACGTATGCATACAACC
TGCAGGTGCACCGCTCCACGGGGACCGCTCCTTTCAATCTGGTGCTCTCG
CGCATCCCGCCAAGTACCAGCATTGCGCCACGCGCCACGGCGCACCCGGC
AGATGGGCCACAGGCGCCAACAGCGGCGCAAGCCAAACGATCCATCCTAA
GGCGGTATGAGAACGCACTCTCCCTCGCAAAGGAGAGACTCAACGCCTCG
CAGAGGAGTAACAAACAGGACTTCGACCGAAAGGTTATGGAAGGCCCTCA
CCTGAAGGAAGGCGACGAGGTTTTCCTCGACACACTCGGGAAAACATCCG
ACGAACCGCTGGACATCACGCGCAAGTTAATGCCGACCACCTCAGGGCCC
TACAAAGTCCTGGCCACCTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_2952:412882..413352-

>Gvermi803.t1 ID=Gvermi803.t1|Name=Gvermi803.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=471bp|location=Sequence derived from alignment at ScGOVlb_2952:412882..413352- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCAACAAAACCATTGCCTCGAGGCTGAAGCACTACGTCGCGGAGCA
CCAGAAGGATTGGGACGCATATGTGGGCCTCCTCACGTATGCATACAACC
TGCAGGTGCACCGCTCCACGGGGACCGCTCCTTTCAATCTGGTGCTCTCG
CGCATCCCGCCAAGTACCAGCATTGCGCCACGCGCCACGGCGCACCCGGC
AGATGGGCCACAGGCGCCAACAGCGGCGCAAGCCAAACGATCCATCCTAA
GGCGGTATGAGAACGCACTCTCCCTCGCAAAGGAGAGACTCAACGCCTCG
CAGAGGAGTAACAAACAGGACTTCGACCGAAAGGTTATGGAAGGCCCTCA
CCTGAAGGAAGGCGACGAGGTTTTCCTCGACACACTCGGGAAAACATCCG
ACGAACCGCTGGACATCACGCGCAAGTTAATGCCGACCACCTCAGGGCCC
TACAAAGTCCTGGCCACCTAA
back to top