Gvermi800.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi800.t1
Unique NameGvermi800.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length242
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:400236..400961 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog717774.Marme_2712
PFAMsLysM
Max annot lvl1236|Gammaproteobacteria
Evalue2.59e-41
EggNOG OGsCOG1388@1|root,COG1388@2|Bacteria,1P9XK@1224|Proteobacteria,1SVF3@1236|Gammaproteobacteria
DescriptionLysM domain
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi800Gvermi800Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 400236..400961 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi800.t1.stop1Gvermi800.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 400236..400238 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi800.t1.CDS1Gvermi800.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 400236..400961 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi800.t1.exon1Gvermi800.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 400236..400961 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi800.t1.start1Gvermi800.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 400959..400961 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi800.t1Gvermi800.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 400236..400961 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi800.t1 ID=Gvermi800.t1|Name=Gvermi800.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=242bp
MRVFLLLIFAFASTIFRTSAVSTRYRGYWEKTWRVPSSRFRRANLGFAFS
GHVDMNKVLRESSLRYDRLRGSKIITIGGGNKYGRWTRRVIRNLDKAIRS
GRLNAYSGIAYDIEEGDSGLRKHFLRSFRLAKSRGFLVIVAITHTAPYGI
GDSYQLMRYIIPSRYIDIISPIMYPSDINFQSCRSRGGVEYRTSQNVPWW
WFTYSRAAIVPSIWRGIYYDQAATFLKEQGISTDGYIAWCS*
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spliced messenger RNA

>Gvermi800.t1 ID=Gvermi800.t1|Name=Gvermi800.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=726bp|location=Sequence derived from alignment at ScGOVlb_2952:400236..400961- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGTCTTCTTGCTGCTTATCTTTGCTTTTGCTTCAACTATCTTTCG
CACATCGGCTGTGAGTACCAGATACCGCGGCTATTGGGAAAAGACATGGA
GGGTGCCATCCTCGCGTTTCCGGAGGGCCAATCTGGGATTCGCGTTCAGT
GGTCATGTTGATATGAACAAAGTCCTGCGAGAGAGTTCACTTCGGTACGA
CCGACTGCGAGGCAGTAAGATCATTACCATCGGTGGAGGAAATAAATATG
GACGGTGGACTCGCCGGGTGATTAGAAATCTGGACAAGGCCATTCGCTCT
GGAAGGCTCAACGCTTATAGCGGAATCGCGTATGATATCGAAGAGGGTGA
TAGCGGTCTTCGCAAACATTTCCTCAGGTCCTTCAGGTTGGCAAAAAGTC
GGGGATTTCTTGTTATCGTTGCTATTACACATACAGCACCGTACGGAATC
GGCGATTCGTACCAGCTGATGAGATATATCATTCCAAGTCGCTACATTGA
TATTATATCTCCTATCATGTATCCTAGTGACATTAACTTTCAGTCGTGTA
GAAGTCGGGGCGGGGTTGAATATCGGACGTCACAAAATGTTCCGTGGTGG
TGGTTCACGTACTCCAGAGCTGCTATTGTACCATCGATATGGCGTGGCAT
ATATTATGATCAAGCTGCTACTTTTTTGAAAGAGCAGGGCATTTCAACGG
ATGGATACATAGCATGGTGTTCGTAA
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protein sequence of Gvermi800.t1

>Gvermi800.t1 ID=Gvermi800.t1|Name=Gvermi800.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=242bp
MRVFLLLIFAFASTIFRTSAVSTRYRGYWEKTWRVPSSRFRRANLGFAFS
GHVDMNKVLRESSLRYDRLRGSKIITIGGGNKYGRWTRRVIRNLDKAIRS
GRLNAYSGIAYDIEEGDSGLRKHFLRSFRLAKSRGFLVIVAITHTAPYGI
GDSYQLMRYIIPSRYIDIISPIMYPSDINFQSCRSRGGVEYRTSQNVPWW
WFTYSRAAIVPSIWRGIYYDQAATFLKEQGISTDGYIAWCS*
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mRNA from alignment at ScGOVlb_2952:400236..400961-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi800.t1 ID=Gvermi800.t1|Name=Gvermi800.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=726bp|location=Sequence derived from alignment at ScGOVlb_2952:400236..400961- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTGTCTTCTTGCTGCTTATCTTTGCTTTTGCTTCAACTATCTTTCG
CACATCGGCTGTGAGTACCAGATACCGCGGCTATTGGGAAAAGACATGGA
GGGTGCCATCCTCGCGTTTCCGGAGGGCCAATCTGGGATTCGCGTTCAGT
GGTCATGTTGATATGAACAAAGTCCTGCGAGAGAGTTCACTTCGGTACGA
CCGACTGCGAGGCAGTAAGATCATTACCATCGGTGGAGGAAATAAATATG
GACGGTGGACTCGCCGGGTGATTAGAAATCTGGACAAGGCCATTCGCTCT
GGAAGGCTCAACGCTTATAGCGGAATCGCGTATGATATCGAAGAGGGTGA
TAGCGGTCTTCGCAAACATTTCCTCAGGTCCTTCAGGTTGGCAAAAAGTC
GGGGATTTCTTGTTATCGTTGCTATTACACATACAGCACCGTACGGAATC
GGCGATTCGTACCAGCTGATGAGATATATCATTCCAAGTCGCTACATTGA
TATTATATCTCCTATCATGTATCCTAGTGACATTAACTTTCAGTCGTGTA
GAAGTCGGGGCGGGGTTGAATATCGGACGTCACAAAATGTTCCGTGGTGG
TGGTTCACGTACTCCAGAGCTGCTATTGTACCATCGATATGGCGTGGCAT
ATATTATGATCAAGCTGCTACTTTTTTGAAAGAGCAGGGCATTTCAACGG
ATGGATACATAGCATGGTGTTCGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:400236..400961-

>Gvermi800.t1 ID=Gvermi800.t1|Name=Gvermi800.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=726bp|location=Sequence derived from alignment at ScGOVlb_2952:400236..400961- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTGTCTTCTTGCTGCTTATCTTTGCTTTTGCTTCAACTATCTTTCG
CACATCGGCTGTGAGTACCAGATACCGCGGCTATTGGGAAAAGACATGGA
GGGTGCCATCCTCGCGTTTCCGGAGGGCCAATCTGGGATTCGCGTTCAGT
GGTCATGTTGATATGAACAAAGTCCTGCGAGAGAGTTCACTTCGGTACGA
CCGACTGCGAGGCAGTAAGATCATTACCATCGGTGGAGGAAATAAATATG
GACGGTGGACTCGCCGGGTGATTAGAAATCTGGACAAGGCCATTCGCTCT
GGAAGGCTCAACGCTTATAGCGGAATCGCGTATGATATCGAAGAGGGTGA
TAGCGGTCTTCGCAAACATTTCCTCAGGTCCTTCAGGTTGGCAAAAAGTC
GGGGATTTCTTGTTATCGTTGCTATTACACATACAGCACCGTACGGAATC
GGCGATTCGTACCAGCTGATGAGATATATCATTCCAAGTCGCTACATTGA
TATTATATCTCCTATCATGTATCCTAGTGACATTAACTTTCAGTCGTGTA
GAAGTCGGGGCGGGGTTGAATATCGGACGTCACAAAATGTTCCGTGGTGG
TGGTTCACGTACTCCAGAGCTGCTATTGTACCATCGATATGGCGTGGCAT
ATATTATGATCAAGCTGCTACTTTTTTGAAAGAGCAGGGCATTTCAACGG
ATGGATACATAGCATGGTGTTCGTAA
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