Gvermi790.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi790.t1
Unique NameGvermi790.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length202
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:290858..291463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi790Gvermi790Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 290858..291463 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi790.t1.stop1Gvermi790.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 290858..290860 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi790.t1.CDS1Gvermi790.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 290858..291463 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi790.t1.exon1Gvermi790.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 290858..291463 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi790.t1.start1Gvermi790.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 291461..291463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi790.t1Gvermi790.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 290858..291463 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi790.t1 ID=Gvermi790.t1|Name=Gvermi790.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=202bp
MTKFNQHILCLLVLASIHVIKASGTPRSCNGTEPGPIPEQSIGKTFRYLD
DCYRPSATETVAVYRNLFVFTPIQPTLRVLGCFEKYAMHYRGPDTPPFIS
HFKAFAPPSNLTTLEEVETYCKAEEKNHRELYFAYGTTRDLYIDAVRLMI
ERILRIRDFGCYTDEQGYVLQFPGRAFDNVDVDPVISYLHNVAFTYGFCA
V*
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spliced messenger RNA

>Gvermi790.t1 ID=Gvermi790.t1|Name=Gvermi790.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=606bp|location=Sequence derived from alignment at ScGOVlb_2952:290858..291463- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTAAATTTAATCAACATATCCTATGCCTCCTTGTGTTGGCCTCGAT
TCATGTAATCAAAGCATCTGGAACCCCCAGATCGTGCAACGGAACTGAAC
CCGGTCCGATACCTGAGCAATCGATCGGAAAGACATTTCGCTATCTGGAT
GATTGTTATCGCCCTTCTGCCACTGAGACTGTTGCTGTCTACCGCAACCT
CTTTGTATTTACTCCCATTCAACCCACACTCCGTGTATTGGGCTGTTTTG
AGAAATATGCGATGCACTACAGAGGGCCAGACACGCCGCCATTCATATCT
CACTTCAAAGCCTTTGCTCCTCCTTCTAATCTGACAACCCTTGAGGAAGT
TGAAACATATTGCAAAGCAGAAGAGAAAAATCATCGAGAACTGTATTTTG
CGTACGGCACGACAAGAGATCTTTACATTGATGCGGTTCGCCTAATGATT
GAGAGGATACTAAGAATCCGGGACTTCGGATGTTACACCGATGAGCAGGG
CTATGTATTACAATTTCCCGGACGTGCGTTTGATAACGTCGATGTCGATC
CTGTCATTTCCTATCTTCACAATGTGGCTTTCACTTATGGCTTCTGCGCA
GTGTAA
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protein sequence of Gvermi790.t1

>Gvermi790.t1 ID=Gvermi790.t1|Name=Gvermi790.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=202bp
MTKFNQHILCLLVLASIHVIKASGTPRSCNGTEPGPIPEQSIGKTFRYLD
DCYRPSATETVAVYRNLFVFTPIQPTLRVLGCFEKYAMHYRGPDTPPFIS
HFKAFAPPSNLTTLEEVETYCKAEEKNHRELYFAYGTTRDLYIDAVRLMI
ERILRIRDFGCYTDEQGYVLQFPGRAFDNVDVDPVISYLHNVAFTYGFCA
V*
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mRNA from alignment at ScGOVlb_2952:290858..291463-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi790.t1 ID=Gvermi790.t1|Name=Gvermi790.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=606bp|location=Sequence derived from alignment at ScGOVlb_2952:290858..291463- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTAAATTTAATCAACATATCCTATGCCTCCTTGTGTTGGCCTCGAT
TCATGTAATCAAAGCATCTGGAACCCCCAGATCGTGCAACGGAACTGAAC
CCGGTCCGATACCTGAGCAATCGATCGGAAAGACATTTCGCTATCTGGAT
GATTGTTATCGCCCTTCTGCCACTGAGACTGTTGCTGTCTACCGCAACCT
CTTTGTATTTACTCCCATTCAACCCACACTCCGTGTATTGGGCTGTTTTG
AGAAATATGCGATGCACTACAGAGGGCCAGACACGCCGCCATTCATATCT
CACTTCAAAGCCTTTGCTCCTCCTTCTAATCTGACAACCCTTGAGGAAGT
TGAAACATATTGCAAAGCAGAAGAGAAAAATCATCGAGAACTGTATTTTG
CGTACGGCACGACAAGAGATCTTTACATTGATGCGGTTCGCCTAATGATT
GAGAGGATACTAAGAATCCGGGACTTCGGATGTTACACCGATGAGCAGGG
CTATGTATTACAATTTCCCGGACGTGCGTTTGATAACGTCGATGTCGATC
CTGTCATTTCCTATCTTCACAATGTGGCTTTCACTTATGGCTTCTGCGCA
GTGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:290858..291463-

>Gvermi790.t1 ID=Gvermi790.t1|Name=Gvermi790.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=606bp|location=Sequence derived from alignment at ScGOVlb_2952:290858..291463- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTAAATTTAATCAACATATCCTATGCCTCCTTGTGTTGGCCTCGAT
TCATGTAATCAAAGCATCTGGAACCCCCAGATCGTGCAACGGAACTGAAC
CCGGTCCGATACCTGAGCAATCGATCGGAAAGACATTTCGCTATCTGGAT
GATTGTTATCGCCCTTCTGCCACTGAGACTGTTGCTGTCTACCGCAACCT
CTTTGTATTTACTCCCATTCAACCCACACTCCGTGTATTGGGCTGTTTTG
AGAAATATGCGATGCACTACAGAGGGCCAGACACGCCGCCATTCATATCT
CACTTCAAAGCCTTTGCTCCTCCTTCTAATCTGACAACCCTTGAGGAAGT
TGAAACATATTGCAAAGCAGAAGAGAAAAATCATCGAGAACTGTATTTTG
CGTACGGCACGACAAGAGATCTTTACATTGATGCGGTTCGCCTAATGATT
GAGAGGATACTAAGAATCCGGGACTTCGGATGTTACACCGATGAGCAGGG
CTATGTATTACAATTTCCCGGACGTGCGTTTGATAACGTCGATGTCGATC
CTGTCATTTCCTATCTTCACAATGTGGCTTTCACTTATGGCTTCTGCGCA
GTGTAA
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