Gvermi770.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi770.t1
Unique NameGvermi770.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length481
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:30086..31528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708398.1
PFAMsBiotin_carb_C,Biotin_carb_N,CPSase_L_D2
Max annot lvl2759|Eukaryota
KEGG rclassRC00040,RC00253,RC00367
KEGG koko:K01961
KEGG ReactionR00742,R04385
KEGG Pathwayko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212
KEGG ModuleM00082,M00376
Evalue4.46e-208
EggNOG OGsCOG4770@1|root,KOG0238@2759|Eukaryota
EC6.3.4.14,6.4.1.2
DescriptionCoA carboxylase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi770Gvermi770Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 30086..31528 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi770.t1.start1Gvermi770.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 30086..30088 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi770.t1.CDS1Gvermi770.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 30086..31528 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi770.t1.exon1Gvermi770.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 30086..31528 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi770.t1.stop1Gvermi770.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 31526..31528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi770.t1Gvermi770.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 30086..31528 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi770.t1 ID=Gvermi770.t1|Name=Gvermi770.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=481bp
MVAAPSASTDPETTQSVTPIRKLLIANRGEIAIRVIRACAELGIFSVAVY
SQADRDALHVSLADQAICIGEAPSSSSYLCVPNILAAATVTGADAIHPGY
GFLSENAEFADICAAHGLRFVGPTAEAISKMGDKATAKSTMLDAGVPCVP
GSRGVLESVEEAIKVGRELGFPLMLKATAGGGGRGIKIVNAEEELESAFK
TCSAEAEAAFSDGGLYMERYVQAPRHVEIQVLADNYGNCIHLGERDCSVQ
RRNQKLIEEAPSPALNEQLREQMGTAAVNAAKAIGYRGAGTVEFLLDRNG
KFYFMEMNTRIQVEHPVTEAITGVDLIQQQIRVAEGQKLSYEQKDIELRG
HAIEARINAEDPVHNFRPMPGKVSGFLPAGGIGVRWDGQVFTGWRIPPNY
DSLLGKLIVWAPTRREAIQRLKRALSETAVQGVPTTIEFHLQVVQNETFI
KGEHIYTDFIESEGLLQKLREQKEEGGGAA*
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spliced messenger RNA

>Gvermi770.t1 ID=Gvermi770.t1|Name=Gvermi770.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1443bp|location=Sequence derived from alignment at ScGOVlb_2952:30086..31528+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCTGCGCCGTCAGCATCCACCGACCCAGAGACCACTCAATCTGT
AACTCCCATCCGCAAGCTACTCATCGCCAATCGCGGCGAAATCGCCATTC
GCGTCATTCGCGCCTGCGCTGAACTCGGCATCTTCTCGGTCGCAGTATAT
TCGCAAGCAGACCGCGACGCGTTGCATGTGTCTCTCGCCGATCAAGCCAT
TTGCATTGGCGAAGCGCCATCCTCCTCTTCGTATCTTTGTGTTCCGAACA
TTCTTGCTGCCGCCACTGTTACCGGGGCCGATGCCATCCATCCGGGGTAC
GGCTTTTTGTCTGAGAACGCTGAATTCGCGGACATTTGCGCTGCGCATGG
CTTGCGCTTTGTTGGCCCCACTGCGGAGGCAATCTCCAAAATGGGTGACA
AGGCTACTGCTAAGTCGACCATGCTTGATGCCGGAGTACCATGTGTGCCG
GGCAGCCGCGGGGTGCTCGAATCGGTGGAAGAGGCGATTAAAGTAGGACG
CGAACTAGGCTTTCCACTGATGTTGAAAGCGACTGCCGGTGGCGGTGGGC
GAGGTATCAAGATCGTGAACGCTGAGGAAGAGCTAGAGTCCGCGTTCAAG
ACGTGCTCAGCTGAAGCGGAAGCAGCATTTTCAGATGGCGGGTTGTACAT
GGAACGCTACGTGCAGGCACCGAGGCATGTGGAGATTCAAGTGTTGGCAG
ACAATTACGGTAACTGCATACACCTCGGTGAGCGTGATTGTTCAGTACAA
CGGAGGAACCAGAAGCTGATTGAAGAGGCTCCATCGCCGGCGCTTAACGA
ACAGTTGCGAGAGCAAATGGGTACTGCGGCGGTGAACGCAGCCAAGGCAA
TTGGGTATCGTGGAGCTGGAACGGTGGAGTTCTTGTTGGATCGCAACGGA
AAGTTTTACTTCATGGAGATGAACACGCGTATTCAGGTTGAACACCCGGT
AACTGAAGCAATCACGGGAGTGGATCTGATCCAGCAGCAGATACGGGTGG
CCGAAGGTCAGAAACTTTCGTATGAACAAAAGGACATTGAGCTACGTGGA
CACGCAATCGAAGCGCGCATCAACGCTGAGGACCCCGTGCACAACTTCCG
GCCGATGCCCGGAAAGGTGAGCGGGTTTCTGCCGGCGGGTGGAATCGGGG
TGAGGTGGGATGGACAGGTGTTCACGGGATGGCGCATTCCACCGAACTAC
GACAGCCTGCTGGGCAAGCTGATAGTGTGGGCGCCGACTCGCCGTGAGGC
GATTCAGAGGCTGAAGCGGGCGCTGAGCGAGACGGCGGTGCAGGGGGTGC
CGACGACGATTGAATTTCACCTGCAGGTGGTGCAGAACGAAACGTTCATT
AAGGGAGAGCACATCTACACAGATTTCATCGAGAGTGAAGGCCTGCTGCA
GAAATTGCGGGAGCAAAAAGAGGAGGGGGGGGGCGCGGCGTAA
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protein sequence of Gvermi770.t1

>Gvermi770.t1 ID=Gvermi770.t1|Name=Gvermi770.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=481bp
MVAAPSASTDPETTQSVTPIRKLLIANRGEIAIRVIRACAELGIFSVAVY
SQADRDALHVSLADQAICIGEAPSSSSYLCVPNILAAATVTGADAIHPGY
GFLSENAEFADICAAHGLRFVGPTAEAISKMGDKATAKSTMLDAGVPCVP
GSRGVLESVEEAIKVGRELGFPLMLKATAGGGGRGIKIVNAEEELESAFK
TCSAEAEAAFSDGGLYMERYVQAPRHVEIQVLADNYGNCIHLGERDCSVQ
RRNQKLIEEAPSPALNEQLREQMGTAAVNAAKAIGYRGAGTVEFLLDRNG
KFYFMEMNTRIQVEHPVTEAITGVDLIQQQIRVAEGQKLSYEQKDIELRG
HAIEARINAEDPVHNFRPMPGKVSGFLPAGGIGVRWDGQVFTGWRIPPNY
DSLLGKLIVWAPTRREAIQRLKRALSETAVQGVPTTIEFHLQVVQNETFI
KGEHIYTDFIESEGLLQKLREQKEEGGGAA*
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mRNA from alignment at ScGOVlb_2952:30086..31528+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi770.t1 ID=Gvermi770.t1|Name=Gvermi770.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1443bp|location=Sequence derived from alignment at ScGOVlb_2952:30086..31528+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGGCTGCGCCGTCAGCATCCACCGACCCAGAGACCACTCAATCTGT
AACTCCCATCCGCAAGCTACTCATCGCCAATCGCGGCGAAATCGCCATTC
GCGTCATTCGCGCCTGCGCTGAACTCGGCATCTTCTCGGTCGCAGTATAT
TCGCAAGCAGACCGCGACGCGTTGCATGTGTCTCTCGCCGATCAAGCCAT
TTGCATTGGCGAAGCGCCATCCTCCTCTTCGTATCTTTGTGTTCCGAACA
TTCTTGCTGCCGCCACTGTTACCGGGGCCGATGCCATCCATCCGGGGTAC
GGCTTTTTGTCTGAGAACGCTGAATTCGCGGACATTTGCGCTGCGCATGG
CTTGCGCTTTGTTGGCCCCACTGCGGAGGCAATCTCCAAAATGGGTGACA
AGGCTACTGCTAAGTCGACCATGCTTGATGCCGGAGTACCATGTGTGCCG
GGCAGCCGCGGGGTGCTCGAATCGGTGGAAGAGGCGATTAAAGTAGGACG
CGAACTAGGCTTTCCACTGATGTTGAAAGCGACTGCCGGTGGCGGTGGGC
GAGGTATCAAGATCGTGAACGCTGAGGAAGAGCTAGAGTCCGCGTTCAAG
ACGTGCTCAGCTGAAGCGGAAGCAGCATTTTCAGATGGCGGGTTGTACAT
GGAACGCTACGTGCAGGCACCGAGGCATGTGGAGATTCAAGTGTTGGCAG
ACAATTACGGTAACTGCATACACCTCGGTGAGCGTGATTGTTCAGTACAA
CGGAGGAACCAGAAGCTGATTGAAGAGGCTCCATCGCCGGCGCTTAACGA
ACAGTTGCGAGAGCAAATGGGTACTGCGGCGGTGAACGCAGCCAAGGCAA
TTGGGTATCGTGGAGCTGGAACGGTGGAGTTCTTGTTGGATCGCAACGGA
AAGTTTTACTTCATGGAGATGAACACGCGTATTCAGGTTGAACACCCGGT
AACTGAAGCAATCACGGGAGTGGATCTGATCCAGCAGCAGATACGGGTGG
CCGAAGGTCAGAAACTTTCGTATGAACAAAAGGACATTGAGCTACGTGGA
CACGCAATCGAAGCGCGCATCAACGCTGAGGACCCCGTGCACAACTTCCG
GCCGATGCCCGGAAAGGTGAGCGGGTTTCTGCCGGCGGGTGGAATCGGGG
TGAGGTGGGATGGACAGGTGTTCACGGGATGGCGCATTCCACCGAACTAC
GACAGCCTGCTGGGCAAGCTGATAGTGTGGGCGCCGACTCGCCGTGAGGC
GATTCAGAGGCTGAAGCGGGCGCTGAGCGAGACGGCGGTGCAGGGGGTGC
CGACGACGATTGAATTTCACCTGCAGGTGGTGCAGAACGAAACGTTCATT
AAGGGAGAGCACATCTACACAGATTTCATCGAGAGTGAAGGCCTGCTGCA
GAAATTGCGGGAGCAAAAAGAGGAGGGGGGGGGCGCGGCGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:30086..31528+

>Gvermi770.t1 ID=Gvermi770.t1|Name=Gvermi770.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1443bp|location=Sequence derived from alignment at ScGOVlb_2952:30086..31528+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGGCTGCGCCGTCAGCATCCACCGACCCAGAGACCACTCAATCTGT
AACTCCCATCCGCAAGCTACTCATCGCCAATCGCGGCGAAATCGCCATTC
GCGTCATTCGCGCCTGCGCTGAACTCGGCATCTTCTCGGTCGCAGTATAT
TCGCAAGCAGACCGCGACGCGTTGCATGTGTCTCTCGCCGATCAAGCCAT
TTGCATTGGCGAAGCGCCATCCTCCTCTTCGTATCTTTGTGTTCCGAACA
TTCTTGCTGCCGCCACTGTTACCGGGGCCGATGCCATCCATCCGGGGTAC
GGCTTTTTGTCTGAGAACGCTGAATTCGCGGACATTTGCGCTGCGCATGG
CTTGCGCTTTGTTGGCCCCACTGCGGAGGCAATCTCCAAAATGGGTGACA
AGGCTACTGCTAAGTCGACCATGCTTGATGCCGGAGTACCATGTGTGCCG
GGCAGCCGCGGGGTGCTCGAATCGGTGGAAGAGGCGATTAAAGTAGGACG
CGAACTAGGCTTTCCACTGATGTTGAAAGCGACTGCCGGTGGCGGTGGGC
GAGGTATCAAGATCGTGAACGCTGAGGAAGAGCTAGAGTCCGCGTTCAAG
ACGTGCTCAGCTGAAGCGGAAGCAGCATTTTCAGATGGCGGGTTGTACAT
GGAACGCTACGTGCAGGCACCGAGGCATGTGGAGATTCAAGTGTTGGCAG
ACAATTACGGTAACTGCATACACCTCGGTGAGCGTGATTGTTCAGTACAA
CGGAGGAACCAGAAGCTGATTGAAGAGGCTCCATCGCCGGCGCTTAACGA
ACAGTTGCGAGAGCAAATGGGTACTGCGGCGGTGAACGCAGCCAAGGCAA
TTGGGTATCGTGGAGCTGGAACGGTGGAGTTCTTGTTGGATCGCAACGGA
AAGTTTTACTTCATGGAGATGAACACGCGTATTCAGGTTGAACACCCGGT
AACTGAAGCAATCACGGGAGTGGATCTGATCCAGCAGCAGATACGGGTGG
CCGAAGGTCAGAAACTTTCGTATGAACAAAAGGACATTGAGCTACGTGGA
CACGCAATCGAAGCGCGCATCAACGCTGAGGACCCCGTGCACAACTTCCG
GCCGATGCCCGGAAAGGTGAGCGGGTTTCTGCCGGCGGGTGGAATCGGGG
TGAGGTGGGATGGACAGGTGTTCACGGGATGGCGCATTCCACCGAACTAC
GACAGCCTGCTGGGCAAGCTGATAGTGTGGGCGCCGACTCGCCGTGAGGC
GATTCAGAGGCTGAAGCGGGCGCTGAGCGAGACGGCGGTGCAGGGGGTGC
CGACGACGATTGAATTTCACCTGCAGGTGGTGCAGAACGAAACGTTCATT
AAGGGAGAGCACATCTACACAGATTTCATCGAGAGTGAAGGCCTGCTGCA
GAAATTGCGGGAGCAAAAAGAGGAGGGGGGGGGCGCGGCGTAA
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