Gvermi770.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi770.t1
Unique Name	Gvermi770.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	481

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_2952	contig	ScGOVlb_2952:30086..31528 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708398.1
PFAMs	Biotin_carb_C,Biotin_carb_N,CPSase_L_D2
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00040,RC00253,RC00367
KEGG ko	ko:K01961
KEGG Reaction	R00742,R04385
KEGG Pathway	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212
KEGG Module	M00082,M00376
Evalue	4.46e-208
EggNOG OGs	COG4770@1\|root,KOG0238@2759\|Eukaryota
EC	6.3.4.14,6.4.1.2
Description	CoA carboxylase activity
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi770	Gvermi770	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_2952 30086..31528 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi770.t1.start1	Gvermi770.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_2952 30086..30088 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi770.t1.CDS1	Gvermi770.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_2952 30086..31528 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi770.t1.exon1	Gvermi770.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_2952 30086..31528 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi770.t1.stop1	Gvermi770.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_2952 31526..31528 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi770.t1	Gvermi770.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_2952 30086..31528 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_2952:30086..31528+
coding sequence from alignment at ScGOVlb_2952:30086..31528+

mRNA sequence

>Gvermi770.t1 ID=Gvermi770.t1|Name=Gvermi770.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=481bp
MVAAPSASTDPETTQSVTPIRKLLIANRGEIAIRVIRACAELGIFSVAVY
SQADRDALHVSLADQAICIGEAPSSSSYLCVPNILAAATVTGADAIHPGY
GFLSENAEFADICAAHGLRFVGPTAEAISKMGDKATAKSTMLDAGVPCVP
GSRGVLESVEEAIKVGRELGFPLMLKATAGGGGRGIKIVNAEEELESAFK
TCSAEAEAAFSDGGLYMERYVQAPRHVEIQVLADNYGNCIHLGERDCSVQ
RRNQKLIEEAPSPALNEQLREQMGTAAVNAAKAIGYRGAGTVEFLLDRNG
KFYFMEMNTRIQVEHPVTEAITGVDLIQQQIRVAEGQKLSYEQKDIELRG
HAIEARINAEDPVHNFRPMPGKVSGFLPAGGIGVRWDGQVFTGWRIPPNY
DSLLGKLIVWAPTRREAIQRLKRALSETAVQGVPTTIEFHLQVVQNETFI
KGEHIYTDFIESEGLLQKLREQKEEGGGAA*

spliced messenger RNA

>Gvermi770.t1 ID=Gvermi770.t1|Name=Gvermi770.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1443bp|location=Sequence derived from alignment at ScGOVlb_2952:30086..31528+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCTGCGCCGTCAGCATCCACCGACCCAGAGACCACTCAATCTGT
AACTCCCATCCGCAAGCTACTCATCGCCAATCGCGGCGAAATCGCCATTC
GCGTCATTCGCGCCTGCGCTGAACTCGGCATCTTCTCGGTCGCAGTATAT
TCGCAAGCAGACCGCGACGCGTTGCATGTGTCTCTCGCCGATCAAGCCAT
TTGCATTGGCGAAGCGCCATCCTCCTCTTCGTATCTTTGTGTTCCGAACA
TTCTTGCTGCCGCCACTGTTACCGGGGCCGATGCCATCCATCCGGGGTAC
GGCTTTTTGTCTGAGAACGCTGAATTCGCGGACATTTGCGCTGCGCATGG
CTTGCGCTTTGTTGGCCCCACTGCGGAGGCAATCTCCAAAATGGGTGACA
AGGCTACTGCTAAGTCGACCATGCTTGATGCCGGAGTACCATGTGTGCCG
GGCAGCCGCGGGGTGCTCGAATCGGTGGAAGAGGCGATTAAAGTAGGACG
CGAACTAGGCTTTCCACTGATGTTGAAAGCGACTGCCGGTGGCGGTGGGC
GAGGTATCAAGATCGTGAACGCTGAGGAAGAGCTAGAGTCCGCGTTCAAG
ACGTGCTCAGCTGAAGCGGAAGCAGCATTTTCAGATGGCGGGTTGTACAT
GGAACGCTACGTGCAGGCACCGAGGCATGTGGAGATTCAAGTGTTGGCAG
ACAATTACGGTAACTGCATACACCTCGGTGAGCGTGATTGTTCAGTACAA
CGGAGGAACCAGAAGCTGATTGAAGAGGCTCCATCGCCGGCGCTTAACGA
ACAGTTGCGAGAGCAAATGGGTACTGCGGCGGTGAACGCAGCCAAGGCAA
TTGGGTATCGTGGAGCTGGAACGGTGGAGTTCTTGTTGGATCGCAACGGA
AAGTTTTACTTCATGGAGATGAACACGCGTATTCAGGTTGAACACCCGGT
AACTGAAGCAATCACGGGAGTGGATCTGATCCAGCAGCAGATACGGGTGG
CCGAAGGTCAGAAACTTTCGTATGAACAAAAGGACATTGAGCTACGTGGA
CACGCAATCGAAGCGCGCATCAACGCTGAGGACCCCGTGCACAACTTCCG
GCCGATGCCCGGAAAGGTGAGCGGGTTTCTGCCGGCGGGTGGAATCGGGG
TGAGGTGGGATGGACAGGTGTTCACGGGATGGCGCATTCCACCGAACTAC
GACAGCCTGCTGGGCAAGCTGATAGTGTGGGCGCCGACTCGCCGTGAGGC
GATTCAGAGGCTGAAGCGGGCGCTGAGCGAGACGGCGGTGCAGGGGGTGC
CGACGACGATTGAATTTCACCTGCAGGTGGTGCAGAACGAAACGTTCATT
AAGGGAGAGCACATCTACACAGATTTCATCGAGAGTGAAGGCCTGCTGCA
GAAATTGCGGGAGCAAAAAGAGGAGGGGGGGGGCGCGGCGTAA

protein sequence of Gvermi770.t1

>Gvermi770.t1 ID=Gvermi770.t1|Name=Gvermi770.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=481bp
MVAAPSASTDPETTQSVTPIRKLLIANRGEIAIRVIRACAELGIFSVAVY
SQADRDALHVSLADQAICIGEAPSSSSYLCVPNILAAATVTGADAIHPGY
GFLSENAEFADICAAHGLRFVGPTAEAISKMGDKATAKSTMLDAGVPCVP
GSRGVLESVEEAIKVGRELGFPLMLKATAGGGGRGIKIVNAEEELESAFK
TCSAEAEAAFSDGGLYMERYVQAPRHVEIQVLADNYGNCIHLGERDCSVQ
RRNQKLIEEAPSPALNEQLREQMGTAAVNAAKAIGYRGAGTVEFLLDRNG
KFYFMEMNTRIQVEHPVTEAITGVDLIQQQIRVAEGQKLSYEQKDIELRG
HAIEARINAEDPVHNFRPMPGKVSGFLPAGGIGVRWDGQVFTGWRIPPNY
DSLLGKLIVWAPTRREAIQRLKRALSETAVQGVPTTIEFHLQVVQNETFI
KGEHIYTDFIESEGLLQKLREQKEEGGGAA*

mRNA from alignment at ScGOVlb_2952:30086..31528+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi770.t1 ID=Gvermi770.t1|Name=Gvermi770.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1443bp|location=Sequence derived from alignment at ScGOVlb_2952:30086..31528+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGGCTGCGCCGTCAGCATCCACCGACCCAGAGACCACTCAATCTGT
AACTCCCATCCGCAAGCTACTCATCGCCAATCGCGGCGAAATCGCCATTC
GCGTCATTCGCGCCTGCGCTGAACTCGGCATCTTCTCGGTCGCAGTATAT
TCGCAAGCAGACCGCGACGCGTTGCATGTGTCTCTCGCCGATCAAGCCAT
TTGCATTGGCGAAGCGCCATCCTCCTCTTCGTATCTTTGTGTTCCGAACA
TTCTTGCTGCCGCCACTGTTACCGGGGCCGATGCCATCCATCCGGGGTAC
GGCTTTTTGTCTGAGAACGCTGAATTCGCGGACATTTGCGCTGCGCATGG
CTTGCGCTTTGTTGGCCCCACTGCGGAGGCAATCTCCAAAATGGGTGACA
AGGCTACTGCTAAGTCGACCATGCTTGATGCCGGAGTACCATGTGTGCCG
GGCAGCCGCGGGGTGCTCGAATCGGTGGAAGAGGCGATTAAAGTAGGACG
CGAACTAGGCTTTCCACTGATGTTGAAAGCGACTGCCGGTGGCGGTGGGC
GAGGTATCAAGATCGTGAACGCTGAGGAAGAGCTAGAGTCCGCGTTCAAG
ACGTGCTCAGCTGAAGCGGAAGCAGCATTTTCAGATGGCGGGTTGTACAT
GGAACGCTACGTGCAGGCACCGAGGCATGTGGAGATTCAAGTGTTGGCAG
ACAATTACGGTAACTGCATACACCTCGGTGAGCGTGATTGTTCAGTACAA
CGGAGGAACCAGAAGCTGATTGAAGAGGCTCCATCGCCGGCGCTTAACGA
ACAGTTGCGAGAGCAAATGGGTACTGCGGCGGTGAACGCAGCCAAGGCAA
TTGGGTATCGTGGAGCTGGAACGGTGGAGTTCTTGTTGGATCGCAACGGA
AAGTTTTACTTCATGGAGATGAACACGCGTATTCAGGTTGAACACCCGGT
AACTGAAGCAATCACGGGAGTGGATCTGATCCAGCAGCAGATACGGGTGG
CCGAAGGTCAGAAACTTTCGTATGAACAAAAGGACATTGAGCTACGTGGA
CACGCAATCGAAGCGCGCATCAACGCTGAGGACCCCGTGCACAACTTCCG
GCCGATGCCCGGAAAGGTGAGCGGGTTTCTGCCGGCGGGTGGAATCGGGG
TGAGGTGGGATGGACAGGTGTTCACGGGATGGCGCATTCCACCGAACTAC
GACAGCCTGCTGGGCAAGCTGATAGTGTGGGCGCCGACTCGCCGTGAGGC
GATTCAGAGGCTGAAGCGGGCGCTGAGCGAGACGGCGGTGCAGGGGGTGC
CGACGACGATTGAATTTCACCTGCAGGTGGTGCAGAACGAAACGTTCATT
AAGGGAGAGCACATCTACACAGATTTCATCGAGAGTGAAGGCCTGCTGCA
GAAATTGCGGGAGCAAAAAGAGGAGGGGGGGGGCGCGGCGTAA

Coding sequence (CDS) from alignment at ScGOVlb_2952:30086..31528+

>Gvermi770.t1 ID=Gvermi770.t1|Name=Gvermi770.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1443bp|location=Sequence derived from alignment at ScGOVlb_2952:30086..31528+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGGCTGCGCCGTCAGCATCCACCGACCCAGAGACCACTCAATCTGT
AACTCCCATCCGCAAGCTACTCATCGCCAATCGCGGCGAAATCGCCATTC
GCGTCATTCGCGCCTGCGCTGAACTCGGCATCTTCTCGGTCGCAGTATAT
TCGCAAGCAGACCGCGACGCGTTGCATGTGTCTCTCGCCGATCAAGCCAT
TTGCATTGGCGAAGCGCCATCCTCCTCTTCGTATCTTTGTGTTCCGAACA
TTCTTGCTGCCGCCACTGTTACCGGGGCCGATGCCATCCATCCGGGGTAC
GGCTTTTTGTCTGAGAACGCTGAATTCGCGGACATTTGCGCTGCGCATGG
CTTGCGCTTTGTTGGCCCCACTGCGGAGGCAATCTCCAAAATGGGTGACA
AGGCTACTGCTAAGTCGACCATGCTTGATGCCGGAGTACCATGTGTGCCG
GGCAGCCGCGGGGTGCTCGAATCGGTGGAAGAGGCGATTAAAGTAGGACG
CGAACTAGGCTTTCCACTGATGTTGAAAGCGACTGCCGGTGGCGGTGGGC
GAGGTATCAAGATCGTGAACGCTGAGGAAGAGCTAGAGTCCGCGTTCAAG
ACGTGCTCAGCTGAAGCGGAAGCAGCATTTTCAGATGGCGGGTTGTACAT
GGAACGCTACGTGCAGGCACCGAGGCATGTGGAGATTCAAGTGTTGGCAG
ACAATTACGGTAACTGCATACACCTCGGTGAGCGTGATTGTTCAGTACAA
CGGAGGAACCAGAAGCTGATTGAAGAGGCTCCATCGCCGGCGCTTAACGA
ACAGTTGCGAGAGCAAATGGGTACTGCGGCGGTGAACGCAGCCAAGGCAA
TTGGGTATCGTGGAGCTGGAACGGTGGAGTTCTTGTTGGATCGCAACGGA
AAGTTTTACTTCATGGAGATGAACACGCGTATTCAGGTTGAACACCCGGT
AACTGAAGCAATCACGGGAGTGGATCTGATCCAGCAGCAGATACGGGTGG
CCGAAGGTCAGAAACTTTCGTATGAACAAAAGGACATTGAGCTACGTGGA
CACGCAATCGAAGCGCGCATCAACGCTGAGGACCCCGTGCACAACTTCCG
GCCGATGCCCGGAAAGGTGAGCGGGTTTCTGCCGGCGGGTGGAATCGGGG
TGAGGTGGGATGGACAGGTGTTCACGGGATGGCGCATTCCACCGAACTAC
GACAGCCTGCTGGGCAAGCTGATAGTGTGGGCGCCGACTCGCCGTGAGGC
GATTCAGAGGCTGAAGCGGGCGCTGAGCGAGACGGCGGTGCAGGGGGTGC
CGACGACGATTGAATTTCACCTGCAGGTGGTGCAGAACGAAACGTTCATT
AAGGGAGAGCACATCTACACAGATTTCATCGAGAGTGAAGGCCTGCTGCA
GAAATTGCGGGAGCAAAAAGAGGAGGGGGGGGGCGCGGCGTAA