Gvermi808.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi808.t1
Unique Name	Gvermi808.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	632

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_2952	contig	ScGOVlb_2952:431116..433011 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707368.1
PFAMs	Calreticulin
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08054,ko:K12852
KEGG Pathway	ko03040,ko04141,ko04145,ko04612,ko04918,ko05166,map03040,map04141,map04145,map04612,map04918,map05166
KEGG Module	M00354,M00355
GOs	GO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005789,GO:0006457,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006915,GO:0006950,GO:0007154,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009057,GO:0009266,GO:0009267,GO:0009408,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010498,GO:0012501,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0019538,GO:0019941,GO:0030163,GO:0030176,GO:0030433,GO:0031224,GO:0031227,GO:0031667,GO:0031668,GO:0031669,GO:0031984,GO:0033036,GO:0033554,GO:0034605,GO:0034613,GO:0034976,GO:0036503,GO:0042175,GO:0042221,GO:0042594,GO:0042886,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046872,GO:0046907,GO:0050896,GO:0051082,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0070727,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0098827,GO:1901564,GO:1901565,GO:1901575,GO:1901698
Evalue	1.45e-102
EggNOG OGs	KOG0675@1\|root,KOG0675@2759\|Eukaryota
Description	unfolded protein binding
COG category	M
BRITE	ko00000,ko00001,ko00002,ko03041,ko03110,ko04091,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi808	Gvermi808	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_2952 431116..433011 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi808.t1.start1	Gvermi808.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_2952 431116..431118 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi808.t1.CDS1	Gvermi808.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_2952 431116..433011 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi808.t1.exon1	Gvermi808.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_2952 431116..433011 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi808.t1.stop1	Gvermi808.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_2952 433009..433011 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi808.t1	Gvermi808.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_2952 431116..433011 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_2952:431116..433011+
coding sequence from alignment at ScGOVlb_2952:431116..433011+

mRNA sequence

>Gvermi808.t1 ID=Gvermi808.t1|Name=Gvermi808.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=632bp
MIRLSLLPFLCLLLLFVLHPSQTSPSDAIVLASVDDEAGDIIGEGFEDDM
DIGVEDDEEDPEDHDEDDADSDSAPEPDKPTVIDPEGEENASGYQVPNAG
KPLFFDAFQDSSLPKWTYSSVPQYTGRFAVGQGAKPTFKGDRALIIPQKA
RHYGISAKFSGMEDPSTTDFVVQYEFKLDQGMTCGGGYIKLPTTGFSPAQ
FDGSTKYSVMFGPDKCGATDKVHFIFQSKNPVTGKMTEHHLKSPPSVANT
YDRKTHLYTLAVMKNGSFKVLVDGDVKKEGTLSDSFEPPVQPPKEIEDPE
DKKPDDWVDDAKIRDPEASKPDDWDEDAPKEIVDEDAVKPEGWLDDEPKK
IPDPEAKKPEEWDDEEDGDWEAPLIPNPKCDDVGCGEWTKPMKKNPAYKG
KWTAPLIDNPKYVGPWKPRKIPNKEYYDGSNPSLLPVSAVGLEIWTMDQG
VLFDNMWIGTSLDEATKFAELTFKAKQKKEVEVEEEENAKLAEKEGPSRS
GRFGPFLDKLESGLEWLERTLQPVENYIVKLGLESYLDKLIDVGIQKPMT
VVVATPLLVVTLLLILLGGKKKEAASHPTESETTTTTTDVAAKKKTDEPT
PDDAVEDASTATAAQDEPESTIRKRRTAKAE*

spliced messenger RNA

>Gvermi808.t1 ID=Gvermi808.t1|Name=Gvermi808.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1896bp|location=Sequence derived from alignment at ScGOVlb_2952:431116..433011+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCGACTTTCTTTATTGCCGTTTCTTTGTCTCCTATTGCTGTTTGT
GCTTCATCCCTCACAAACGAGTCCGTCTGATGCGATTGTGTTGGCATCTG
TCGACGATGAAGCCGGTGACATAATTGGGGAAGGTTTCGAAGATGATATG
GACATCGGCGTTGAAGATGATGAAGAGGATCCTGAAGATCATGACGAAGA
CGACGCTGATTCCGATTCCGCCCCAGAACCTGACAAACCCACCGTCATAG
ATCCAGAAGGTGAGGAAAATGCTTCTGGATACCAAGTTCCAAATGCTGGC
AAACCCCTTTTCTTCGATGCATTCCAGGATTCCTCACTCCCTAAGTGGAC
ATATTCATCCGTTCCGCAGTACACTGGCCGCTTTGCCGTTGGCCAGGGTG
CCAAGCCCACCTTCAAAGGAGATCGAGCACTCATCATCCCTCAGAAAGCT
AGACATTATGGTATCAGTGCAAAATTCTCTGGCATGGAAGATCCTTCCAC
CACGGACTTCGTAGTCCAGTATGAATTCAAGTTGGATCAGGGCATGACTT
GCGGTGGTGGATATATCAAACTGCCCACCACTGGGTTCAGTCCTGCTCAG
TTTGACGGCTCAACCAAGTACAGTGTTATGTTTGGTCCGGACAAATGTGG
AGCCACTGACAAGGTGCACTTTATTTTCCAGTCTAAAAATCCTGTCACCG
GCAAGATGACCGAGCATCATCTAAAGAGCCCACCTTCCGTTGCTAACACT
TACGATCGCAAGACTCACTTGTACACATTAGCTGTCATGAAGAATGGCTC
TTTCAAAGTACTTGTAGACGGGGACGTGAAGAAGGAGGGAACTCTTTCAG
ATAGTTTCGAGCCACCGGTTCAGCCACCGAAAGAGATTGAAGATCCCGAG
GACAAGAAGCCGGATGACTGGGTCGATGACGCCAAGATTCGAGATCCCGA
AGCGTCAAAACCGGACGACTGGGATGAGGACGCTCCAAAAGAAATTGTGG
ATGAGGATGCTGTGAAGCCGGAAGGTTGGCTGGACGATGAACCCAAGAAG
ATTCCCGATCCAGAGGCCAAGAAGCCCGAAGAATGGGATGACGAAGAGGA
TGGTGATTGGGAGGCTCCCCTTATTCCCAATCCGAAATGCGACGATGTAG
GTTGTGGTGAATGGACCAAACCCATGAAGAAAAACCCTGCTTACAAGGGT
AAGTGGACTGCACCTTTGATCGACAATCCTAAATACGTTGGCCCATGGAA
ACCGCGCAAGATCCCCAACAAGGAGTATTATGATGGCTCGAACCCGTCAT
TGCTTCCTGTATCGGCAGTTGGCTTGGAGATCTGGACAATGGATCAGGGC
GTATTGTTTGATAATATGTGGATTGGGACGAGTCTCGATGAAGCTACTAA
ATTCGCGGAGCTCACATTCAAGGCAaagcaaaagaaggaagttgaagtag
aggaagaagagaaTGCAAAGCTCGCCGAAAAGGAAGGCCCATCACGTTCT
GGTAGATTTGGTCCGTTCTTGGATAAACTAGAGAGCGGTCTTGAGTGGCT
GGAAAGGACTCTTCAGCCAGTTGAGAATTACATCGTTAAGCTTGGATTGG
AGTCTTATTTGGATAAGCTTATTGATGTCGGCATCCAAAAGCCCATGACA
GTGGTTGTGGCCACTCCTCTGTTGGTTGTTACTCTCCTCCTGATACTTCT
TGGTGGAAAGAAGAAAGAAGCTGCCTCTCATCCAACGGAATCTGAGACAA
CTACGACCACAACTGATGTGGCGGCGAAGAAAAAGACTGATGAACCTACA
CCAGATGATGCCGTCGAAGACGCCAGCACTGCAACAGCGGCACAAGATGA
ACCTGAAAGCACCATCCGCAAGCGTCGCACAGCCAAAGCTGAGTAG

protein sequence of Gvermi808.t1

>Gvermi808.t1 ID=Gvermi808.t1|Name=Gvermi808.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=632bp
MIRLSLLPFLCLLLLFVLHPSQTSPSDAIVLASVDDEAGDIIGEGFEDDM
DIGVEDDEEDPEDHDEDDADSDSAPEPDKPTVIDPEGEENASGYQVPNAG
KPLFFDAFQDSSLPKWTYSSVPQYTGRFAVGQGAKPTFKGDRALIIPQKA
RHYGISAKFSGMEDPSTTDFVVQYEFKLDQGMTCGGGYIKLPTTGFSPAQ
FDGSTKYSVMFGPDKCGATDKVHFIFQSKNPVTGKMTEHHLKSPPSVANT
YDRKTHLYTLAVMKNGSFKVLVDGDVKKEGTLSDSFEPPVQPPKEIEDPE
DKKPDDWVDDAKIRDPEASKPDDWDEDAPKEIVDEDAVKPEGWLDDEPKK
IPDPEAKKPEEWDDEEDGDWEAPLIPNPKCDDVGCGEWTKPMKKNPAYKG
KWTAPLIDNPKYVGPWKPRKIPNKEYYDGSNPSLLPVSAVGLEIWTMDQG
VLFDNMWIGTSLDEATKFAELTFKAKQKKEVEVEEEENAKLAEKEGPSRS
GRFGPFLDKLESGLEWLERTLQPVENYIVKLGLESYLDKLIDVGIQKPMT
VVVATPLLVVTLLLILLGGKKKEAASHPTESETTTTTTDVAAKKKTDEPT
PDDAVEDASTATAAQDEPESTIRKRRTAKAE*

mRNA from alignment at ScGOVlb_2952:431116..433011+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi808.t1 ID=Gvermi808.t1|Name=Gvermi808.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1896bp|location=Sequence derived from alignment at ScGOVlb_2952:431116..433011+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTCGACTTTCTTTATTGCCGTTTCTTTGTCTCCTATTGCTGTTTGT
GCTTCATCCCTCACAAACGAGTCCGTCTGATGCGATTGTGTTGGCATCTG
TCGACGATGAAGCCGGTGACATAATTGGGGAAGGTTTCGAAGATGATATG
GACATCGGCGTTGAAGATGATGAAGAGGATCCTGAAGATCATGACGAAGA
CGACGCTGATTCCGATTCCGCCCCAGAACCTGACAAACCCACCGTCATAG
ATCCAGAAGGTGAGGAAAATGCTTCTGGATACCAAGTTCCAAATGCTGGC
AAACCCCTTTTCTTCGATGCATTCCAGGATTCCTCACTCCCTAAGTGGAC
ATATTCATCCGTTCCGCAGTACACTGGCCGCTTTGCCGTTGGCCAGGGTG
CCAAGCCCACCTTCAAAGGAGATCGAGCACTCATCATCCCTCAGAAAGCT
AGACATTATGGTATCAGTGCAAAATTCTCTGGCATGGAAGATCCTTCCAC
CACGGACTTCGTAGTCCAGTATGAATTCAAGTTGGATCAGGGCATGACTT
GCGGTGGTGGATATATCAAACTGCCCACCACTGGGTTCAGTCCTGCTCAG
TTTGACGGCTCAACCAAGTACAGTGTTATGTTTGGTCCGGACAAATGTGG
AGCCACTGACAAGGTGCACTTTATTTTCCAGTCTAAAAATCCTGTCACCG
GCAAGATGACCGAGCATCATCTAAAGAGCCCACCTTCCGTTGCTAACACT
TACGATCGCAAGACTCACTTGTACACATTAGCTGTCATGAAGAATGGCTC
TTTCAAAGTACTTGTAGACGGGGACGTGAAGAAGGAGGGAACTCTTTCAG
ATAGTTTCGAGCCACCGGTTCAGCCACCGAAAGAGATTGAAGATCCCGAG
GACAAGAAGCCGGATGACTGGGTCGATGACGCCAAGATTCGAGATCCCGA
AGCGTCAAAACCGGACGACTGGGATGAGGACGCTCCAAAAGAAATTGTGG
ATGAGGATGCTGTGAAGCCGGAAGGTTGGCTGGACGATGAACCCAAGAAG
ATTCCCGATCCAGAGGCCAAGAAGCCCGAAGAATGGGATGACGAAGAGGA
TGGTGATTGGGAGGCTCCCCTTATTCCCAATCCGAAATGCGACGATGTAG
GTTGTGGTGAATGGACCAAACCCATGAAGAAAAACCCTGCTTACAAGGGT
AAGTGGACTGCACCTTTGATCGACAATCCTAAATACGTTGGCCCATGGAA
ACCGCGCAAGATCCCCAACAAGGAGTATTATGATGGCTCGAACCCGTCAT
TGCTTCCTGTATCGGCAGTTGGCTTGGAGATCTGGACAATGGATCAGGGC
GTATTGTTTGATAATATGTGGATTGGGACGAGTCTCGATGAAGCTACTAA
ATTCGCGGAGCTCACATTCAAGGCAaagcaaaagaaggaagttgaagtag
aggaagaagagaaTGCAAAGCTCGCCGAAAAGGAAGGCCCATCACGTTCT
GGTAGATTTGGTCCGTTCTTGGATAAACTAGAGAGCGGTCTTGAGTGGCT
GGAAAGGACTCTTCAGCCAGTTGAGAATTACATCGTTAAGCTTGGATTGG
AGTCTTATTTGGATAAGCTTATTGATGTCGGCATCCAAAAGCCCATGACA
GTGGTTGTGGCCACTCCTCTGTTGGTTGTTACTCTCCTCCTGATACTTCT
TGGTGGAAAGAAGAAAGAAGCTGCCTCTCATCCAACGGAATCTGAGACAA
CTACGACCACAACTGATGTGGCGGCGAAGAAAAAGACTGATGAACCTACA
CCAGATGATGCCGTCGAAGACGCCAGCACTGCAACAGCGGCACAAGATGA
ACCTGAAAGCACCATCCGCAAGCGTCGCACAGCCAAAGCTGAGTAG

Coding sequence (CDS) from alignment at ScGOVlb_2952:431116..433011+

>Gvermi808.t1 ID=Gvermi808.t1|Name=Gvermi808.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1896bp|location=Sequence derived from alignment at ScGOVlb_2952:431116..433011+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTCGACTTTCTTTATTGCCGTTTCTTTGTCTCCTATTGCTGTTTGT
GCTTCATCCCTCACAAACGAGTCCGTCTGATGCGATTGTGTTGGCATCTG
TCGACGATGAAGCCGGTGACATAATTGGGGAAGGTTTCGAAGATGATATG
GACATCGGCGTTGAAGATGATGAAGAGGATCCTGAAGATCATGACGAAGA
CGACGCTGATTCCGATTCCGCCCCAGAACCTGACAAACCCACCGTCATAG
ATCCAGAAGGTGAGGAAAATGCTTCTGGATACCAAGTTCCAAATGCTGGC
AAACCCCTTTTCTTCGATGCATTCCAGGATTCCTCACTCCCTAAGTGGAC
ATATTCATCCGTTCCGCAGTACACTGGCCGCTTTGCCGTTGGCCAGGGTG
CCAAGCCCACCTTCAAAGGAGATCGAGCACTCATCATCCCTCAGAAAGCT
AGACATTATGGTATCAGTGCAAAATTCTCTGGCATGGAAGATCCTTCCAC
CACGGACTTCGTAGTCCAGTATGAATTCAAGTTGGATCAGGGCATGACTT
GCGGTGGTGGATATATCAAACTGCCCACCACTGGGTTCAGTCCTGCTCAG
TTTGACGGCTCAACCAAGTACAGTGTTATGTTTGGTCCGGACAAATGTGG
AGCCACTGACAAGGTGCACTTTATTTTCCAGTCTAAAAATCCTGTCACCG
GCAAGATGACCGAGCATCATCTAAAGAGCCCACCTTCCGTTGCTAACACT
TACGATCGCAAGACTCACTTGTACACATTAGCTGTCATGAAGAATGGCTC
TTTCAAAGTACTTGTAGACGGGGACGTGAAGAAGGAGGGAACTCTTTCAG
ATAGTTTCGAGCCACCGGTTCAGCCACCGAAAGAGATTGAAGATCCCGAG
GACAAGAAGCCGGATGACTGGGTCGATGACGCCAAGATTCGAGATCCCGA
AGCGTCAAAACCGGACGACTGGGATGAGGACGCTCCAAAAGAAATTGTGG
ATGAGGATGCTGTGAAGCCGGAAGGTTGGCTGGACGATGAACCCAAGAAG
ATTCCCGATCCAGAGGCCAAGAAGCCCGAAGAATGGGATGACGAAGAGGA
TGGTGATTGGGAGGCTCCCCTTATTCCCAATCCGAAATGCGACGATGTAG
GTTGTGGTGAATGGACCAAACCCATGAAGAAAAACCCTGCTTACAAGGGT
AAGTGGACTGCACCTTTGATCGACAATCCTAAATACGTTGGCCCATGGAA
ACCGCGCAAGATCCCCAACAAGGAGTATTATGATGGCTCGAACCCGTCAT
TGCTTCCTGTATCGGCAGTTGGCTTGGAGATCTGGACAATGGATCAGGGC
GTATTGTTTGATAATATGTGGATTGGGACGAGTCTCGATGAAGCTACTAA
ATTCGCGGAGCTCACATTCAAGGCAaagcaaaagaaggaagttgaagtag
aggaagaagagaaTGCAAAGCTCGCCGAAAAGGAAGGCCCATCACGTTCT
GGTAGATTTGGTCCGTTCTTGGATAAACTAGAGAGCGGTCTTGAGTGGCT
GGAAAGGACTCTTCAGCCAGTTGAGAATTACATCGTTAAGCTTGGATTGG
AGTCTTATTTGGATAAGCTTATTGATGTCGGCATCCAAAAGCCCATGACA
GTGGTTGTGGCCACTCCTCTGTTGGTTGTTACTCTCCTCCTGATACTTCT
TGGTGGAAAGAAGAAAGAAGCTGCCTCTCATCCAACGGAATCTGAGACAA
CTACGACCACAACTGATGTGGCGGCGAAGAAAAAGACTGATGAACCTACA
CCAGATGATGCCGTCGAAGACGCCAGCACTGCAACAGCGGCACAAGATGA
ACCTGAAAGCACCATCCGCAAGCGTCGCACAGCCAAAGCTGAGTAG