Gvermi872.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi872.t1
Unique NameGvermi872.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length497
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:753013..754503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog583355.Caka_0059
PFAMsBig_4,Glyco_hydro_16,RicinB_lectin_2
Max annot lvl2|Bacteria
KEGG koko:K20846
Evalue4.5e-54
EggNOG OGsCOG2273@1|root,COG2273@2|Bacteria
EC3.2.1.83
Descriptionxyloglucan:xyloglucosyl transferase activity
COG categoryG
CAZyGH16
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi872Gvermi872Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 753013..754503 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi872.t1.stop1Gvermi872.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 753013..753015 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi872.t1.CDS1Gvermi872.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 753013..754503 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi872.t1.exon1Gvermi872.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 753013..754503 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi872.t1.start1Gvermi872.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 754501..754503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi872.t1Gvermi872.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 753013..754503 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi872.t1 ID=Gvermi872.t1|Name=Gvermi872.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=497bp
MKNTTTSLLLVVALLALFALTAECRQPKLRGNLFKRFTFTPIEEFTDEFK
SRAFDLDKWYDINPRWRGRQPGLFATKNVLQRRGELRLRGRFEESDEPFK
DAPEGYENYTTSFVQTRKLIKYGYFEVRAKPSNSRLSSAFWGSLDTPTLW
TEIDVFEIGGGAVRDAIDFRNRINMNLHVFRNEKRGISPGVNEINKPTYY
THSKKLRSKFNTYGVDWSRRFITWTFNGRAIRRDRNRYWRQAFPIKLDVE
TMPFWFGLPSKDTLPATFKIKYIRTWSRRRRSKDEQETVRQFNTGLFPMP
PLGTDTQGEEVGDEDGDDGDDDEALTEIEEMGSQTETQAPVDGLQRPPIP
GSNERVYMPVTPLGGGSWNSVVEKVNIDLDDISGAMFDSDEQIDMADFDE
EIVNFGSMGSTLVPGGTSESDGESDGESESSELGGGGSTGSGEDEQVLAG
LPIGFLGRPDRPSSASGPAEPEENDGSGGRGFGRIAGGVHLPNFGW*
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spliced messenger RNA

>Gvermi872.t1 ID=Gvermi872.t1|Name=Gvermi872.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1491bp|location=Sequence derived from alignment at ScGOVlb_2952:753013..754503- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAAACACAACCACTTCTCTCCTGCTCGTCGTTGCGCTACTCGCGCT
GTTTGCACTAACGGCAGAGTGCAGGCAGCCGAAACTCAGGGGAAATCTGT
TCAAGAGATTCACGTTCACTCCCATTGAAGAATTCACGGATGAATTTAAG
AGCAGAGCATTTGACTTGGACAAATGGTACGACATCAACCCCCGCTGGAG
AGGAAGGCAACCAGGTCTGTTTGCAACGAAAAATGTATTACAGAGAAGGG
GAGAGTTACGACTCCGCGGTCGCTTCGAAGAAAGTGATGAACCGTTCAAA
GATGCGCCAGAAGGATACGAAAACTACACAACATCATTTGTGCAAACTCG
AAAGCTCATAAAATACGGGTACTTTGAAGTGCGTGCCAAGCCATCAAATT
CAAGGCTGTCGTCTGCGTTTTGGGGCTCCCTCGATACACCTACTCTCTGG
ACAGAAATCGATGTGTTTGAGATTGGAGGCGGAGCGGTGAGAGATGCAAT
AGACTTCCGCAATCGAATCAACATGAATCTTCATGTGTTTCGTAACGAGA
AGAGAGGAATTTCGCCCGGTGTGAACGAAATTAACAAACCCACTTACTAC
ACGCATAGCAAGAAGCTCCGTTCAAAGTTCAATACTTATGGTGTTGATTG
GAGCAGGAGGTTTATCACGTGGACTTTCAACGGCCGAGCCATCCGCCGTG
ATCGCAACAGATATTGGCGACAAGCGTTTCCGATAAAACTCGACGTCGAG
ACAATGCCCTTTTGGTTTGGGCTGCCATCCAAAGACACGCTACCGGCGAC
TTTCAAGATAAAATACATCCGAACCTGGTCGCGAAGGAGACGGAGTAAAG
ACGAACAAGAAACAGTTCGGCAGTTCAACACGGGTCTGTTTCCCATGCCA
CCGCTGGGAACCGACACGCAAGGCGAAGAAGTTGGCGATGAAGATGGTGA
TGATGGTGATGACGACGAGGCTTTGACAGAAATCGAAGAAATGGGATCTC
AGACGGAAACTCAAGCGCCCGTTGACGGGTTGCAGCGACCGCCAATCCCG
GGCAGCAATGAGCGTGTGTACATGCCAGTGACTCCGCTGGGCGGCGGCTC
GTGGAATTCGGTGGTGGAAAAGGTCAACATCGATCTCGACGACATCAGTG
GGGCAATGTTCGACAGTGATGAACAGATAGACATGGCCGACTTCGATGAA
GAAATTGTGAACTTCGGTTCGATGGGAAGCACATTAGTGCCGGGTGGTAC
GAGCGAGAGCGATGGCGAGAGCGATGGCGAGAGCGAGAGCTCGGAATTGG
GCGGCGGCGGTTCAACTGGTAGTGGCGAAGATGAACAAGTATTGGCTGGT
CTACCAATCGGATTTCTTGGCCGACCGGACCGACCGAGCTCGGCGAGCGG
ACCAGCAGAGCCGGAAGAGAATGACGGGAGCGGCGGACGCGGGTTTGGCC
GCATAGCCGGTGGAGTGCACCTGCCCAACTTTGGCTGGTGA
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protein sequence of Gvermi872.t1

>Gvermi872.t1 ID=Gvermi872.t1|Name=Gvermi872.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=497bp
MKNTTTSLLLVVALLALFALTAECRQPKLRGNLFKRFTFTPIEEFTDEFK
SRAFDLDKWYDINPRWRGRQPGLFATKNVLQRRGELRLRGRFEESDEPFK
DAPEGYENYTTSFVQTRKLIKYGYFEVRAKPSNSRLSSAFWGSLDTPTLW
TEIDVFEIGGGAVRDAIDFRNRINMNLHVFRNEKRGISPGVNEINKPTYY
THSKKLRSKFNTYGVDWSRRFITWTFNGRAIRRDRNRYWRQAFPIKLDVE
TMPFWFGLPSKDTLPATFKIKYIRTWSRRRRSKDEQETVRQFNTGLFPMP
PLGTDTQGEEVGDEDGDDGDDDEALTEIEEMGSQTETQAPVDGLQRPPIP
GSNERVYMPVTPLGGGSWNSVVEKVNIDLDDISGAMFDSDEQIDMADFDE
EIVNFGSMGSTLVPGGTSESDGESDGESESSELGGGGSTGSGEDEQVLAG
LPIGFLGRPDRPSSASGPAEPEENDGSGGRGFGRIAGGVHLPNFGW*
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mRNA from alignment at ScGOVlb_2952:753013..754503-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi872.t1 ID=Gvermi872.t1|Name=Gvermi872.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1491bp|location=Sequence derived from alignment at ScGOVlb_2952:753013..754503- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAAAACACAACCACTTCTCTCCTGCTCGTCGTTGCGCTACTCGCGCT
GTTTGCACTAACGGCAGAGTGCAGGCAGCCGAAACTCAGGGGAAATCTGT
TCAAGAGATTCACGTTCACTCCCATTGAAGAATTCACGGATGAATTTAAG
AGCAGAGCATTTGACTTGGACAAATGGTACGACATCAACCCCCGCTGGAG
AGGAAGGCAACCAGGTCTGTTTGCAACGAAAAATGTATTACAGAGAAGGG
GAGAGTTACGACTCCGCGGTCGCTTCGAAGAAAGTGATGAACCGTTCAAA
GATGCGCCAGAAGGATACGAAAACTACACAACATCATTTGTGCAAACTCG
AAAGCTCATAAAATACGGGTACTTTGAAGTGCGTGCCAAGCCATCAAATT
CAAGGCTGTCGTCTGCGTTTTGGGGCTCCCTCGATACACCTACTCTCTGG
ACAGAAATCGATGTGTTTGAGATTGGAGGCGGAGCGGTGAGAGATGCAAT
AGACTTCCGCAATCGAATCAACATGAATCTTCATGTGTTTCGTAACGAGA
AGAGAGGAATTTCGCCCGGTGTGAACGAAATTAACAAACCCACTTACTAC
ACGCATAGCAAGAAGCTCCGTTCAAAGTTCAATACTTATGGTGTTGATTG
GAGCAGGAGGTTTATCACGTGGACTTTCAACGGCCGAGCCATCCGCCGTG
ATCGCAACAGATATTGGCGACAAGCGTTTCCGATAAAACTCGACGTCGAG
ACAATGCCCTTTTGGTTTGGGCTGCCATCCAAAGACACGCTACCGGCGAC
TTTCAAGATAAAATACATCCGAACCTGGTCGCGAAGGAGACGGAGTAAAG
ACGAACAAGAAACAGTTCGGCAGTTCAACACGGGTCTGTTTCCCATGCCA
CCGCTGGGAACCGACACGCAAGGCGAAGAAGTTGGCGATGAAGATGGTGA
TGATGGTGATGACGACGAGGCTTTGACAGAAATCGAAGAAATGGGATCTC
AGACGGAAACTCAAGCGCCCGTTGACGGGTTGCAGCGACCGCCAATCCCG
GGCAGCAATGAGCGTGTGTACATGCCAGTGACTCCGCTGGGCGGCGGCTC
GTGGAATTCGGTGGTGGAAAAGGTCAACATCGATCTCGACGACATCAGTG
GGGCAATGTTCGACAGTGATGAACAGATAGACATGGCCGACTTCGATGAA
GAAATTGTGAACTTCGGTTCGATGGGAAGCACATTAGTGCCGGGTGGTAC
GAGCGAGAGCGATGGCGAGAGCGATGGCGAGAGCGAGAGCTCGGAATTGG
GCGGCGGCGGTTCAACTGGTAGTGGCGAAGATGAACAAGTATTGGCTGGT
CTACCAATCGGATTTCTTGGCCGACCGGACCGACCGAGCTCGGCGAGCGG
ACCAGCAGAGCCGGAAGAGAATGACGGGAGCGGCGGACGCGGGTTTGGCC
GCATAGCCGGTGGAGTGCACCTGCCCAACTTTGGCTGGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:753013..754503-

>Gvermi872.t1 ID=Gvermi872.t1|Name=Gvermi872.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1491bp|location=Sequence derived from alignment at ScGOVlb_2952:753013..754503- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAAAACACAACCACTTCTCTCCTGCTCGTCGTTGCGCTACTCGCGCT
GTTTGCACTAACGGCAGAGTGCAGGCAGCCGAAACTCAGGGGAAATCTGT
TCAAGAGATTCACGTTCACTCCCATTGAAGAATTCACGGATGAATTTAAG
AGCAGAGCATTTGACTTGGACAAATGGTACGACATCAACCCCCGCTGGAG
AGGAAGGCAACCAGGTCTGTTTGCAACGAAAAATGTATTACAGAGAAGGG
GAGAGTTACGACTCCGCGGTCGCTTCGAAGAAAGTGATGAACCGTTCAAA
GATGCGCCAGAAGGATACGAAAACTACACAACATCATTTGTGCAAACTCG
AAAGCTCATAAAATACGGGTACTTTGAAGTGCGTGCCAAGCCATCAAATT
CAAGGCTGTCGTCTGCGTTTTGGGGCTCCCTCGATACACCTACTCTCTGG
ACAGAAATCGATGTGTTTGAGATTGGAGGCGGAGCGGTGAGAGATGCAAT
AGACTTCCGCAATCGAATCAACATGAATCTTCATGTGTTTCGTAACGAGA
AGAGAGGAATTTCGCCCGGTGTGAACGAAATTAACAAACCCACTTACTAC
ACGCATAGCAAGAAGCTCCGTTCAAAGTTCAATACTTATGGTGTTGATTG
GAGCAGGAGGTTTATCACGTGGACTTTCAACGGCCGAGCCATCCGCCGTG
ATCGCAACAGATATTGGCGACAAGCGTTTCCGATAAAACTCGACGTCGAG
ACAATGCCCTTTTGGTTTGGGCTGCCATCCAAAGACACGCTACCGGCGAC
TTTCAAGATAAAATACATCCGAACCTGGTCGCGAAGGAGACGGAGTAAAG
ACGAACAAGAAACAGTTCGGCAGTTCAACACGGGTCTGTTTCCCATGCCA
CCGCTGGGAACCGACACGCAAGGCGAAGAAGTTGGCGATGAAGATGGTGA
TGATGGTGATGACGACGAGGCTTTGACAGAAATCGAAGAAATGGGATCTC
AGACGGAAACTCAAGCGCCCGTTGACGGGTTGCAGCGACCGCCAATCCCG
GGCAGCAATGAGCGTGTGTACATGCCAGTGACTCCGCTGGGCGGCGGCTC
GTGGAATTCGGTGGTGGAAAAGGTCAACATCGATCTCGACGACATCAGTG
GGGCAATGTTCGACAGTGATGAACAGATAGACATGGCCGACTTCGATGAA
GAAATTGTGAACTTCGGTTCGATGGGAAGCACATTAGTGCCGGGTGGTAC
GAGCGAGAGCGATGGCGAGAGCGATGGCGAGAGCGAGAGCTCGGAATTGG
GCGGCGGCGGTTCAACTGGTAGTGGCGAAGATGAACAAGTATTGGCTGGT
CTACCAATCGGATTTCTTGGCCGACCGGACCGACCGAGCTCGGCGAGCGG
ACCAGCAGAGCCGGAAGAGAATGACGGGAGCGGCGGACGCGGGTTTGGCC
GCATAGCCGGTGGAGTGCACCTGCCCAACTTTGGCTGGTGA
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