Gvermi789.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi789.t1
Unique NameGvermi789.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length549
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:288153..289799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi789Gvermi789Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 288153..289799 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi789.t1.start1Gvermi789.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 288153..288155 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi789.t1.CDS1Gvermi789.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 288153..289799 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi789.t1.exon1Gvermi789.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 288153..289799 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi789.t1.stop1Gvermi789.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 289797..289799 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi789.t1Gvermi789.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 288153..289799 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi789.t1 ID=Gvermi789.t1|Name=Gvermi789.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=549bp
MTFSRSCVRTKAQLIFSFVWAIIALFLVQVCSADKFSGCVTQRFPIYEDN
QKNRRFIISEYGPSAQILRVRKDLQEKIAPMTSLLKNVVKIIDDRRRKHD
VLQCNLDDKGWLYTADLSSRYLQIGKLNDFCHSQLDGADAVSEGLLSRSD
FHNSLDVIGDGVQALYETVSSIAESPQRQGLGNWTSSYPLRNWGVRGGMQ
QCRVETFSAYRQRNNFFLRASMTNHEVHRYVQDRHRQFVSEWIRDDGSQS
LEMVHPSIKDMKLVKGSTLFEEWWGRAWISWHGQMQDFSSPAVQRAAEEN
EVNVELATDSIAPANIAIITLPLVMSFIPFSFLADLDTWRGLLYIILTDV
ISAVPFLIKGIELVRSSQSNLVLAVYYAGDEDLADIQIWAANCRGTDRFK
IVGWILIVVGILAVIGGIALEILCKKYMDRKRNEDGVNVVGPFGKAMLAS
PGMETSNSCFDLMSARYSDESSEVDMKEFDVEEAKASDFHDSVSWDEKPG
WIAAVLKRFLILSHDSPLQVWANSVDSQRMTSAEQAGVGHDGNASVER*
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spliced messenger RNA

>Gvermi789.t1 ID=Gvermi789.t1|Name=Gvermi789.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1647bp|location=Sequence derived from alignment at ScGOVlb_2952:288153..289799+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATTCAGTCGCTCTTGCGTTCGCACTAAAGCTCAGTTAATCTTCTC
GTTCGTGTGGGCTATTATTGCGCTTTTTTTGGTTCAAGTTTGTTCCGCCG
ACAAGTTTTCAGGTTGTGTGACACAACGATTCCCCATTTATGAAGACAAT
CAAAAGAACCGGAGATTTATTATCTCCGAATATGGTCCCAGTGCTCAAAT
TCTTAGAGTCAGAAAAGATTTGCAAGAAAAGATCGCGCCAATGACCAGTT
TGCTGAAAAACGTCGTAAAAATAATAGACGATCGAAGACGCAAACATGAT
GTACTGCAATGTAACCTCGACGATAAAGGCTGGTTGTATACCGCTGATCT
AAGCTCAAGGTATCTTCAGATTGGGAAACTGAACGATTTTTGCCACTCTC
AGCTTGATGGAGCCGACGCGGTATCAGAGGGATTGCTATCGAGAAGTGAT
TTTCACAACTCCTTAGATGTTATTGGCGATGGAGTTCAAGCTCTTTACGA
GACAGTGAGCAGCATCGCAGAATCTCCGCAACGACAAGGCCTCGGGAATT
GGACAAGCTCTTACCCGCTTCGGAACTGGGGAGTACGAGGCGGTATGCAA
CAGTGCAGAGTGGAGACATTCTCCGCATACCGACAGAGAAATAACTTCTT
CCTACGAGCATCTATGACAAACCATGAAGTCCACAGGTATGTTCAAGATC
GTCACAGACAATTCGTGAGTGAGTGGATTCGGGACGACGGCTCTCAAAGT
CTTGAAATGGTACACCCAAGTATTAAGGACATGAAACTCGTGAAAGGAAG
TACCCTTTTTGAGGAGTGGTGGGGTAGGGCCTGGATATCATGGCACGGTC
AGATGCAAGATTTTAGTAGTCCGGCAGTTCAACGAGCTGCTGAAGAAAAT
GAGGTTAATGTGGAATTGGCAACAGACTCTATTGCGCCTGCCAACATCGC
CATAATAACTCTCCCACTCGTGATGAGTTTTATTCCCTTCAGTTTTCTTG
CGGACCTCGACACGTGGCGTGGACTCCTCTACATAATCTTGACAGATGTA
ATTTCTGCTGTTCCTTTCTTGATCAAGGGCATTGAACTCGTCCGCAGTTC
TCAATCAAACTTAGTCCTCGCGGTCTATTACGCCGGAGATGAGGACCTCG
CTGATATTCAGATCTGGGCTGCAAACTGCAGAGGCACGGATAGGTTCAAA
ATTGTCGGATGGATATTAATTGTCGTGGGAATCCTAGCCGTTATTGGCGG
GATTGCACTTGAGATACTGTGCAAAAAGTACATGGATAGAAAGCGCAACG
AGGATGGGGTGAACGTTGTTGGACCGTTTGGAAAAGCAATGCTTGCATCA
CCAGGAATGGAGACTTCAAACTCATGTTTTGATCTGATGTCCGCTCGATA
TTCAGATGAATCAAGTGAAGTAGACATGAAAGAATTTGATGTAGAGGAAG
CGAAAGCTTCAGATTTCCATGATTCTGTATCATGGGATGAGAAACCAGGA
TGGATAGCAGCAGTTCTCAAACGGTTCTTGATTCTTTCACATGATTCACC
TCTTCAAGTCTGGGCAAATTCTGTGGACAGTCAAAGGATGACGAGCGCAG
AACAGGCTGGAGTCGGTCATGATGGCAATGCTAGTGTCGAACGCTAA
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protein sequence of Gvermi789.t1

>Gvermi789.t1 ID=Gvermi789.t1|Name=Gvermi789.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=549bp
MTFSRSCVRTKAQLIFSFVWAIIALFLVQVCSADKFSGCVTQRFPIYEDN
QKNRRFIISEYGPSAQILRVRKDLQEKIAPMTSLLKNVVKIIDDRRRKHD
VLQCNLDDKGWLYTADLSSRYLQIGKLNDFCHSQLDGADAVSEGLLSRSD
FHNSLDVIGDGVQALYETVSSIAESPQRQGLGNWTSSYPLRNWGVRGGMQ
QCRVETFSAYRQRNNFFLRASMTNHEVHRYVQDRHRQFVSEWIRDDGSQS
LEMVHPSIKDMKLVKGSTLFEEWWGRAWISWHGQMQDFSSPAVQRAAEEN
EVNVELATDSIAPANIAIITLPLVMSFIPFSFLADLDTWRGLLYIILTDV
ISAVPFLIKGIELVRSSQSNLVLAVYYAGDEDLADIQIWAANCRGTDRFK
IVGWILIVVGILAVIGGIALEILCKKYMDRKRNEDGVNVVGPFGKAMLAS
PGMETSNSCFDLMSARYSDESSEVDMKEFDVEEAKASDFHDSVSWDEKPG
WIAAVLKRFLILSHDSPLQVWANSVDSQRMTSAEQAGVGHDGNASVER*
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mRNA from alignment at ScGOVlb_2952:288153..289799+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi789.t1 ID=Gvermi789.t1|Name=Gvermi789.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1647bp|location=Sequence derived from alignment at ScGOVlb_2952:288153..289799+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACATTCAGTCGCTCTTGCGTTCGCACTAAAGCTCAGTTAATCTTCTC
GTTCGTGTGGGCTATTATTGCGCTTTTTTTGGTTCAAGTTTGTTCCGCCG
ACAAGTTTTCAGGTTGTGTGACACAACGATTCCCCATTTATGAAGACAAT
CAAAAGAACCGGAGATTTATTATCTCCGAATATGGTCCCAGTGCTCAAAT
TCTTAGAGTCAGAAAAGATTTGCAAGAAAAGATCGCGCCAATGACCAGTT
TGCTGAAAAACGTCGTAAAAATAATAGACGATCGAAGACGCAAACATGAT
GTACTGCAATGTAACCTCGACGATAAAGGCTGGTTGTATACCGCTGATCT
AAGCTCAAGGTATCTTCAGATTGGGAAACTGAACGATTTTTGCCACTCTC
AGCTTGATGGAGCCGACGCGGTATCAGAGGGATTGCTATCGAGAAGTGAT
TTTCACAACTCCTTAGATGTTATTGGCGATGGAGTTCAAGCTCTTTACGA
GACAGTGAGCAGCATCGCAGAATCTCCGCAACGACAAGGCCTCGGGAATT
GGACAAGCTCTTACCCGCTTCGGAACTGGGGAGTACGAGGCGGTATGCAA
CAGTGCAGAGTGGAGACATTCTCCGCATACCGACAGAGAAATAACTTCTT
CCTACGAGCATCTATGACAAACCATGAAGTCCACAGGTATGTTCAAGATC
GTCACAGACAATTCGTGAGTGAGTGGATTCGGGACGACGGCTCTCAAAGT
CTTGAAATGGTACACCCAAGTATTAAGGACATGAAACTCGTGAAAGGAAG
TACCCTTTTTGAGGAGTGGTGGGGTAGGGCCTGGATATCATGGCACGGTC
AGATGCAAGATTTTAGTAGTCCGGCAGTTCAACGAGCTGCTGAAGAAAAT
GAGGTTAATGTGGAATTGGCAACAGACTCTATTGCGCCTGCCAACATCGC
CATAATAACTCTCCCACTCGTGATGAGTTTTATTCCCTTCAGTTTTCTTG
CGGACCTCGACACGTGGCGTGGACTCCTCTACATAATCTTGACAGATGTA
ATTTCTGCTGTTCCTTTCTTGATCAAGGGCATTGAACTCGTCCGCAGTTC
TCAATCAAACTTAGTCCTCGCGGTCTATTACGCCGGAGATGAGGACCTCG
CTGATATTCAGATCTGGGCTGCAAACTGCAGAGGCACGGATAGGTTCAAA
ATTGTCGGATGGATATTAATTGTCGTGGGAATCCTAGCCGTTATTGGCGG
GATTGCACTTGAGATACTGTGCAAAAAGTACATGGATAGAAAGCGCAACG
AGGATGGGGTGAACGTTGTTGGACCGTTTGGAAAAGCAATGCTTGCATCA
CCAGGAATGGAGACTTCAAACTCATGTTTTGATCTGATGTCCGCTCGATA
TTCAGATGAATCAAGTGAAGTAGACATGAAAGAATTTGATGTAGAGGAAG
CGAAAGCTTCAGATTTCCATGATTCTGTATCATGGGATGAGAAACCAGGA
TGGATAGCAGCAGTTCTCAAACGGTTCTTGATTCTTTCACATGATTCACC
TCTTCAAGTCTGGGCAAATTCTGTGGACAGTCAAAGGATGACGAGCGCAG
AACAGGCTGGAGTCGGTCATGATGGCAATGCTAGTGTCGAACGCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:288153..289799+

>Gvermi789.t1 ID=Gvermi789.t1|Name=Gvermi789.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1647bp|location=Sequence derived from alignment at ScGOVlb_2952:288153..289799+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACATTCAGTCGCTCTTGCGTTCGCACTAAAGCTCAGTTAATCTTCTC
GTTCGTGTGGGCTATTATTGCGCTTTTTTTGGTTCAAGTTTGTTCCGCCG
ACAAGTTTTCAGGTTGTGTGACACAACGATTCCCCATTTATGAAGACAAT
CAAAAGAACCGGAGATTTATTATCTCCGAATATGGTCCCAGTGCTCAAAT
TCTTAGAGTCAGAAAAGATTTGCAAGAAAAGATCGCGCCAATGACCAGTT
TGCTGAAAAACGTCGTAAAAATAATAGACGATCGAAGACGCAAACATGAT
GTACTGCAATGTAACCTCGACGATAAAGGCTGGTTGTATACCGCTGATCT
AAGCTCAAGGTATCTTCAGATTGGGAAACTGAACGATTTTTGCCACTCTC
AGCTTGATGGAGCCGACGCGGTATCAGAGGGATTGCTATCGAGAAGTGAT
TTTCACAACTCCTTAGATGTTATTGGCGATGGAGTTCAAGCTCTTTACGA
GACAGTGAGCAGCATCGCAGAATCTCCGCAACGACAAGGCCTCGGGAATT
GGACAAGCTCTTACCCGCTTCGGAACTGGGGAGTACGAGGCGGTATGCAA
CAGTGCAGAGTGGAGACATTCTCCGCATACCGACAGAGAAATAACTTCTT
CCTACGAGCATCTATGACAAACCATGAAGTCCACAGGTATGTTCAAGATC
GTCACAGACAATTCGTGAGTGAGTGGATTCGGGACGACGGCTCTCAAAGT
CTTGAAATGGTACACCCAAGTATTAAGGACATGAAACTCGTGAAAGGAAG
TACCCTTTTTGAGGAGTGGTGGGGTAGGGCCTGGATATCATGGCACGGTC
AGATGCAAGATTTTAGTAGTCCGGCAGTTCAACGAGCTGCTGAAGAAAAT
GAGGTTAATGTGGAATTGGCAACAGACTCTATTGCGCCTGCCAACATCGC
CATAATAACTCTCCCACTCGTGATGAGTTTTATTCCCTTCAGTTTTCTTG
CGGACCTCGACACGTGGCGTGGACTCCTCTACATAATCTTGACAGATGTA
ATTTCTGCTGTTCCTTTCTTGATCAAGGGCATTGAACTCGTCCGCAGTTC
TCAATCAAACTTAGTCCTCGCGGTCTATTACGCCGGAGATGAGGACCTCG
CTGATATTCAGATCTGGGCTGCAAACTGCAGAGGCACGGATAGGTTCAAA
ATTGTCGGATGGATATTAATTGTCGTGGGAATCCTAGCCGTTATTGGCGG
GATTGCACTTGAGATACTGTGCAAAAAGTACATGGATAGAAAGCGCAACG
AGGATGGGGTGAACGTTGTTGGACCGTTTGGAAAAGCAATGCTTGCATCA
CCAGGAATGGAGACTTCAAACTCATGTTTTGATCTGATGTCCGCTCGATA
TTCAGATGAATCAAGTGAAGTAGACATGAAAGAATTTGATGTAGAGGAAG
CGAAAGCTTCAGATTTCCATGATTCTGTATCATGGGATGAGAAACCAGGA
TGGATAGCAGCAGTTCTCAAACGGTTCTTGATTCTTTCACATGATTCACC
TCTTCAAGTCTGGGCAAATTCTGTGGACAGTCAAAGGATGACGAGCGCAG
AACAGGCTGGAGTCGGTCATGATGGCAATGCTAGTGTCGAACGCTAA
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