Gvermi785.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi785.t1
Unique NameGvermi785.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length268
Homology
BLAST of Gvermi785.t1 vs. uniprot
Match: A0A2V3J3A5_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3A5_9FLOR)

HSP 1 Score: 275 bits (703), Expect = 1.780e-89
Identity = 148/254 (58.27%), Postives = 189/254 (74.41%), Query Frame = 0
Query:   14 SLTLHPALLASFASFVAAITIVGALLLTQFYPGRFRIHPYPYLSDAGLRDPERIVLTIGLCLSANLLLPLIGAVYLHFSETAPPAFVPTFPSRL--PTPHTVTQLNLRSGLALALFLTLFSSVPGYWFLHHVLAALFALSAATWSLTTALLIHAVYRRPPHLAYVCSAIQVAVIALFSCLWISLRLRFPFALIPNKDPRFVYMAVLEYVGTTAFLLSARLATRCARPFHLSLQLHRNRTAHEDSRTRPKSVSVI 265
            +L LHPA LA +  F++A TIV +LLLTQFYP RFRIHPYPYLSDAGLRDPER +L+ G+ +SA L LPL+ A+YLH+S + P   +    SR   P  + + +L+L SG+ L+LFL LF+SVPG+W  HHV AALFALSA TWS+  A++ H   RR P LAY+C+ +Q+ VI  F+ LWISLRLR PFALIPNKDPRFVYMA+LEYVGTTAFL S  LA +    +H+SL+L+R+R +H+  +TRP S + I
Sbjct:   16 ALKLHPAQLARYTVFLSAPTIVASLLLTQFYPKRFRIHPYPYLSDAGLRDPERFILSGGMAISAALFLPLVAAIYLHYSHSLPSTQIDHPLSRHLPPLQNFLPRLSLLSGILLSLFLALFTSVPGFWIPHHVFAALFALSAGTWSVCVAVMSHVQGRRKPRLAYLCALVQLIVIVSFAMLWISLRLRIPFALIPNKDPRFVYMALLEYVGTTAFLTSIILAAQKVSGWHISLRLYRDRPSHD--KTRPDSFTTI 267          
BLAST of Gvermi785.t1 vs. uniprot
Match: R7QEH0_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEH0_CHOCR)

HSP 1 Score: 172 bits (435), Expect = 2.330e-48
Identity = 104/244 (42.62%), Postives = 144/244 (59.02%), Query Frame = 0
Query:   13 PSLTLHPALLASFASFVAAITIVGALLLTQFYPGRFRIHPYPYLSDAGLRDPERIVLTIGLCLSANLLLPLIGAVYL-HFSETAPPAFVPTFPSR--------------LPTPHTVT-----QLNLRSGLALALFLTLFSSVPGYWFLHHVLAALFALSAATWSLTTALLIHAVYRRPPH---------LAYVCSAIQVAVIALFSCLWISLRLRFPFALIPNKDPRFVYMAVLEYVGTTAFLL 227
            P L L P LLA      +++TI+ AL LT F PGRF IHPYPYLSDAGLRDPERIVL+ GL LSA L +P+  A+YL H +       V + P+               LP P  V+     ++ L +G+ LA FL  F+++PG++F HH+ A  FALS+A W L+ AL  +A                + +V   IQ  V+ +F  +W S++ + P+ +IPNKDPRFV +A+LEY+GT+AFL+
Sbjct:   48 PVLYLRPHLLARAVVITSSVTILTALFLTHFIPGRFHIHPYPYLSDAGLRDPERIVLSFGLALSAALFVPVAAALYLLHHAYLDGARHVRSAPALTLSVTRGKSRRWLCLPLPRVVSCDVLLRVGLYAGILLAFFLAFFTAIPGWFFFHHIFALGFALSSAAWCLSHALFSYAKISADSEQRRKMSRVRVMFVLIGIQAMVVGMFGVIWGSVKAQIPYKMIPNKDPRFVMLAILEYLGTSAFLI 291          
BLAST of Gvermi785.t1 vs. uniprot
Match: A0A1X6P9S9_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P9S9_PORUM)

HSP 1 Score: 135 bits (340), Expect = 1.200e-34
Identity = 98/248 (39.52%), Postives = 131/248 (52.82%), Query Frame = 0
Query:   13 PSLTLHPALLASFASFVAAITIVGALLLTQFYPGRFRIHPYPYLSDAGLRDPERIVLTIGLCLSANLLLPLIGAVYLHFSE--TAPPAFVPTFPSR----LPTPHTVTQLNL--RSGLALALFLTLFSSVPGYWFLHHVLAALFALSAATW---SLTTALL-----------------------IHAVYRRPPHLAYVCSAIQVAVIALFSCLWISLRLRFPFALIPNKDPRFVYMAVLEYVGTTAFL 226
            P L ++PA   +     A++T+   L LTQ+YPGRF IHP PY+SDAGLRDPERI+L  GL LS  L +PL  AV LH     ++ P  +P   +R    +P     T + L  R+G  + LFL   +SVPG W  HH +AA FAL  A W   S+ T  L                       + +  RR    A++ SA+   +I +F  +W ++RL  P   I NKD RFV MA+LEY+GT  FL
Sbjct:   18 PCLRINPAACTTACIATASVTLAACLTLTQYYPGRFHIHPLPYVSDAGLRDPERILLGAGLSLSGALFIPLSIAVRLHQRSLLSSLPPLIPVGGARSGRRIPVAIVATAIELAGRAGWGVFLFLVATASVPGRWLAHHAVAASFALCGAVWGGCSVGTLWLTSGGRVAPRPDGAGGTGGGPGAAVGSRARRVTVAAWL-SALLCTIIVVFVAVWATVRLDMP-PKIKNKDKRFVAMAILEYIGTGCFL 263          
The following BLAST results are available for this feature:
BLAST of Gvermi785.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J3A5_9FLOR1.780e-8958.27Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QEH0_CHOCR2.330e-4842.62Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6P9S9_PORUM1.200e-3439.52Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 147..167
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..46
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 121..140
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 173..199
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 200..210
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 92..120
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 168..172
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 211..232
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 47..66
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 67..91
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 233..267
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 141..146
NoneNo IPR availableTMHMMTMhelixcoord: 173..195
NoneNo IPR availableTMHMMTMhelixcoord: 67..89
NoneNo IPR availableTMHMMTMhelixcoord: 210..232
NoneNo IPR availableTMHMMTMhelixcoord: 121..140
NoneNo IPR availableTMHMMTMhelixcoord: 144..166
NoneNo IPR availableTMHMMTMhelixcoord: 21..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:251241..252044 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi785.t1Gvermi785.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_2952 251241..252044 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi785.t1 ID=Gvermi785.t1|Name=Gvermi785.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=268bp
MCARRAPLLSSPPSLTLHPALLASFASFVAAITIVGALLLTQFYPGRFRI
HPYPYLSDAGLRDPERIVLTIGLCLSANLLLPLIGAVYLHFSETAPPAFV
PTFPSRLPTPHTVTQLNLRSGLALALFLTLFSSVPGYWFLHHVLAALFAL
SAATWSLTTALLIHAVYRRPPHLAYVCSAIQVAVIALFSCLWISLRLRFP
FALIPNKDPRFVYMAVLEYVGTTAFLLSARLATRCARPFHLSLQLHRNRT
AHEDSRTRPKSVSVIRP*
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