Gvermi786.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi786.t1
Unique NameGvermi786.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length477
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:252258..254181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706482.1
PFAMsRRM_1,WW
Max annot lvl2759|Eukaryota
KEGG rclassRC00061
KEGG koko:K03942,ko:K14411
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko03015,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map03015,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
Evalue4.68e-57
EggNOG OGsKOG4205@1|root,KOG4205@2759|Eukaryota
EC1.6.5.3,1.6.99.3
Descriptionpoly(U) RNA binding
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi786Gvermi786Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 252258..254181 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi786.t1Gvermi786.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 252258..254181 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi786.t1.stop1Gvermi786.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 252258..252260 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi786.t1.CDS1Gvermi786.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 252258..252322 -
Gvermi786.t1.CDS2Gvermi786.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 252452..252511 -
Gvermi786.t1.CDS3Gvermi786.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 252876..254181 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi786.t1.exon1Gvermi786.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 252258..252322 -
Gvermi786.t1.exon2Gvermi786.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 252452..252511 -
Gvermi786.t1.exon3Gvermi786.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 252876..254181 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi786.t1.intron1Gvermi786.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2952 252323..252451 -
Gvermi786.t1.intron2Gvermi786.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2952 252512..252875 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi786.t1.start1Gvermi786.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 254179..254181 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi786.t1 ID=Gvermi786.t1|Name=Gvermi786.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=477bp
MATLHPPQVDGTPSRDQEPSEKWSAHDAPTNPPVNPDDFPDKSNDTEPSK
QPPEQPKSSNPQTPDPPNVPSALYEQQQRAFQQQQQYSQPPPEPPTQPSP
PSTSAGCKIFVGGLSWETDEQSLRAYFEQIGTVLDCVIMRDRHTGHPRGF
GFVTFADEEAATAAASRRHDLDGRQVEAKRAVPRSEGSSTSAPGHSASFT
AAPRGQRFSEGASQGAPHRAHHTTKCKVFVGGLPSGCGGDEFRNYFSRFG
EVVDAQVMIDHNTGNSRGFGFVTFANEATVNAVVGPGKSNTDHEIMGKCV
EVKRAEPKGASQDRRHNRDSYNQGGGRAGGGASQNDALPHSGANGSGANA
AAAAAAAYYSNYPASLAEQYGAYYNNPQWQQYYAAMGYNFNFPQSYNPYQ
QYLQAYMSTQASANGVGGSAGMPANAASPNAPGAGGYDNAHGSGRYGGGH
GGGHGGGGGPSLRRSSRRDDRYHPYR*
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spliced messenger RNA

>Gvermi786.t1 ID=Gvermi786.t1|Name=Gvermi786.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1431bp|location=Sequence derived from alignment at ScGOVlb_2952:252258..254181- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACTCTACACCCCCCCCAGGTTGACGGTACACCATCCCGCGATCA
AGAACCCTCCGAAAAATGGTCCGCGCACGATGCCCCTACCAACCCACCAG
TAAACCCGGACGACTTTCCCGACAAATCCAACGACACAGAACCCTCCAAA
CAACCGCCCGAACAACCCAAATCTTCTAACCCACAAACGCCCGACCCTCC
AAACGTTCCATCCGCTCTCTATGAACAACAGCAACGCGCCTTCCAACAAC
AGCAGCAATACAGTCAACCTCCGCCGGAACCTCCCACTCAGCCCTCCCCC
CCCTCTACCTCAGCAGGCTGCAAAATCTTCGTGGGCGGTCTCTCATGGGA
GACCGACGAGCAATCATTGCGCGCCTACTTTGAGCAGATAGGAACTGTAC
TGGATTGCGTTATCATGCGCGATCGCCACACAGGGCATCCGCGCGGCTTC
GGCTTTGTCACCTTCGCCGACGAGGAAGCCGCCACTGCCGCCGCCTCGCG
CCGCCACGATTTGGATGGTCGCCAAGTCGAAGCCAAGCGAGCCGTCCCGA
GGAGTGAGGGCTCCTCCACTTCCGCACCCGGCCATTCTGCCTCATTCACT
GCCGCCCCGCGCGGTCAACGCTTCAGCGAAGGTGCCTCCCAGGGCGCGCC
GCATCGCGCACACCACACCACCAAGTGCAAGGTGTTTGTGGGCGGTCTTC
CATCGGGCTGTGGCGGCGATGAGTTTCGCAACTACTTTTCGCGATTTGGA
GAGGTTGTGGATGCCCAAGTGATGATTGACCATAACACTGGAAACTCGAG
AGGGTTTGGATTTGTCACTTTTGCAAATGAGGCCACTGTAAACGCAGTGG
TCGGCCCTGGAAAGTCAAACACGGACCACGAAATTATGGGCAAATGTGTT
GAAGTGAAGAGAGCGGAACCCAAGGGTGCGTCACAAGATAGAAGACATAA
TCGAGATAGCTACAATCAAGGAGGCGGTAGAGCCGGTGGCGGCGCCTCAC
AGAACGATGCACTGCCTCACTCGGGTGCTAATGGCAGCGGTGCCAACGCC
GCCGCTGCCGCCGCTGCAGCTTACTACAGCAATTATCCAGCATCGCTCGC
CGAGCAGTACGGCGCGTACTACAATAACCCCCAGTGGCAGCAGTATTACG
CTGCGATGGGCTACAACTTCAACTTCCCGCAGAGTTATAATCCGTACCAG
CAGTATTTGCAAGCGTACATGAGCACACAAGCTTCGGCAAATGGCGTTGG
TGGTAGTGCGGGTATGCCTGCGAATGCCGCCTCGCCAAACGCTCCGGGCG
CCGGAGGATACGATAATGCACATGGATCCGGACGATATGGCGGTGGACAC
GGTGGGGGCCATGGCGGCGGAGGAGGTCCAAGTCTGAGACGTTCCTCACG
GCGAGATGACCGATATCACCCGTACCGCTAA
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protein sequence of Gvermi786.t1

>Gvermi786.t1 ID=Gvermi786.t1|Name=Gvermi786.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=477bp
MATLHPPQVDGTPSRDQEPSEKWSAHDAPTNPPVNPDDFPDKSNDTEPSK
QPPEQPKSSNPQTPDPPNVPSALYEQQQRAFQQQQQYSQPPPEPPTQPSP
PSTSAGCKIFVGGLSWETDEQSLRAYFEQIGTVLDCVIMRDRHTGHPRGF
GFVTFADEEAATAAASRRHDLDGRQVEAKRAVPRSEGSSTSAPGHSASFT
AAPRGQRFSEGASQGAPHRAHHTTKCKVFVGGLPSGCGGDEFRNYFSRFG
EVVDAQVMIDHNTGNSRGFGFVTFANEATVNAVVGPGKSNTDHEIMGKCV
EVKRAEPKGASQDRRHNRDSYNQGGGRAGGGASQNDALPHSGANGSGANA
AAAAAAAYYSNYPASLAEQYGAYYNNPQWQQYYAAMGYNFNFPQSYNPYQ
QYLQAYMSTQASANGVGGSAGMPANAASPNAPGAGGYDNAHGSGRYGGGH
GGGHGGGGGPSLRRSSRRDDRYHPYR*
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mRNA from alignment at ScGOVlb_2952:252258..254181-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi786.t1 ID=Gvermi786.t1|Name=Gvermi786.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1924bp|location=Sequence derived from alignment at ScGOVlb_2952:252258..254181- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAACTCTACACCCCCCCCAGGTTGACGGTACACCATCCCGCGATCA
AGAACCCTCCGAAAAATGGTCCGCGCACGATGCCCCTACCAACCCACCAG
TAAACCCGGACGACTTTCCCGACAAATCCAACGACACAGAACCCTCCAAA
CAACCGCCCGAACAACCCAAATCTTCTAACCCACAAACGCCCGACCCTCC
AAACGTTCCATCCGCTCTCTATGAACAACAGCAACGCGCCTTCCAACAAC
AGCAGCAATACAGTCAACCTCCGCCGGAACCTCCCACTCAGCCCTCCCCC
CCCTCTACCTCAGCAGGCTGCAAAATCTTCGTGGGCGGTCTCTCATGGGA
GACCGACGAGCAATCATTGCGCGCCTACTTTGAGCAGATAGGAACTGTAC
TGGATTGCGTTATCATGCGCGATCGCCACACAGGGCATCCGCGCGGCTTC
GGCTTTGTCACCTTCGCCGACGAGGAAGCCGCCACTGCCGCCGCCTCGCG
CCGCCACGATTTGGATGGTCGCCAAGTCGAAGCCAAGCGAGCCGTCCCGA
GGAGTGAGGGCTCCTCCACTTCCGCACCCGGCCATTCTGCCTCATTCACT
GCCGCCCCGCGCGGTCAACGCTTCAGCGAAGGTGCCTCCCAGGGCGCGCC
GCATCGCGCACACCACACCACCAAGTGCAAGGTGTTTGTGGGCGGTCTTC
CATCGGGCTGTGGCGGCGATGAGTTTCGCAACTACTTTTCGCGATTTGGA
GAGGTTGTGGATGCCCAAGTGATGATTGACCATAACACTGGAAACTCGAG
AGGGTTTGGATTTGTCACTTTTGCAAATGAGGCCACTGTAAACGCAGTGG
TCGGCCCTGGAAAGTCAAACACGGACCACGAAATTATGGGCAAATGTGTT
GAAGTGAAGAGAGCGGAACCCAAGGGTGCGTCACAAGATAGAAGACATAA
TCGAGATAGCTACAATCAAGGAGGCGGTAGAGCCGGTGGCGGCGCCTCAC
AGAACGATGCACTGCCTCACTCGGGTGCTAATGGCAGCGGTGCCAACGCC
GCCGCTGCCGCCGCTGCAGCTTACTACAGCAATTATCCAGCATCGCTCGC
CGAGCAGTACGGCGCGTACTACAATAACCCCCAGTGGCAGCAGTATTACG
CTGCGATGGGCTACAACTTCAACTTCCCGCAGAGTTATAATCCGTACCAG
CAGTATTTGCAAGCGTACATGAGCACACAAGCTTCGGCAAATGGCGTTGG
TGGTAGTGCGGGTATGCCTGCGAATGCCGCCTCGCCAAACGCTCCGGGCG
CCGGAGGTAAGCTTTCATTTGTATTACTATTAGCGAGCGAACGCATCTGT
TTGGACTATGAAGAGAGAAAGATTTGTTTATTTATGAGTGTGACAAACAG
CTTTGGCTGCTTGCTTAGCCGGCGCGCGTGTGAGCTCCACTTGTTTGCCC
TTATGTCAAAGAGATGCTTTCGTAAGGTGATACCGTTGTTTCGGAGTCTA
TTTCGAATACTAACCAAGCTTTTTTGTTTTTTTTTTTACTGTTGTACTGT
TTGCTTTATGTTTAACTTGTCTCTGTTGCCTGATTACTGATTGTTGTGGC
TTGTTGAAATGACGTCTTGCACTGAATGTTTGTTGTTTGAATAACTCTTT
ACGGGTGAATGATGTTGTAGGATACGATAATGCACATGGATCCGGACGAT
ATGGCGGTGGACACGGTGGGGGCCATGGCGGTGGCCACGGCGGTGCACAT
GGCGGTGCACATGGCGGTGCACATGGCGGTGGTCATGGCGGTGCACATGG
TGGTGGCCACGGGGGAGAAATGGGTCATGGTGGGCAGAACGGACCCGGCT
CAAACACAGGCGGAGGAGGTCCAAGTCTGAGACGTTCCTCACGGCGAGAT
GACCGATATCACCCGTACCGCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:252258..254181-

>Gvermi786.t1 ID=Gvermi786.t1|Name=Gvermi786.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1431bp|location=Sequence derived from alignment at ScGOVlb_2952:252258..254181- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAACTCTACACCCCCCCCAGGTTGACGGTACACCATCCCGCGATCA
AGAACCCTCCGAAAAATGGTCCGCGCACGATGCCCCTACCAACCCACCAG
TAAACCCGGACGACTTTCCCGACAAATCCAACGACACAGAACCCTCCAAA
CAACCGCCCGAACAACCCAAATCTTCTAACCCACAAACGCCCGACCCTCC
AAACGTTCCATCCGCTCTCTATGAACAACAGCAACGCGCCTTCCAACAAC
AGCAGCAATACAGTCAACCTCCGCCGGAACCTCCCACTCAGCCCTCCCCC
CCCTCTACCTCAGCAGGCTGCAAAATCTTCGTGGGCGGTCTCTCATGGGA
GACCGACGAGCAATCATTGCGCGCCTACTTTGAGCAGATAGGAACTGTAC
TGGATTGCGTTATCATGCGCGATCGCCACACAGGGCATCCGCGCGGCTTC
GGCTTTGTCACCTTCGCCGACGAGGAAGCCGCCACTGCCGCCGCCTCGCG
CCGCCACGATTTGGATGGTCGCCAAGTCGAAGCCAAGCGAGCCGTCCCGA
GGAGTGAGGGCTCCTCCACTTCCGCACCCGGCCATTCTGCCTCATTCACT
GCCGCCCCGCGCGGTCAACGCTTCAGCGAAGGTGCCTCCCAGGGCGCGCC
GCATCGCGCACACCACACCACCAAGTGCAAGGTGTTTGTGGGCGGTCTTC
CATCGGGCTGTGGCGGCGATGAGTTTCGCAACTACTTTTCGCGATTTGGA
GAGGTTGTGGATGCCCAAGTGATGATTGACCATAACACTGGAAACTCGAG
AGGGTTTGGATTTGTCACTTTTGCAAATGAGGCCACTGTAAACGCAGTGG
TCGGCCCTGGAAAGTCAAACACGGACCACGAAATTATGGGCAAATGTGTT
GAAGTGAAGAGAGCGGAACCCAAGGGTGCGTCACAAGATAGAAGACATAA
TCGAGATAGCTACAATCAAGGAGGCGGTAGAGCCGGTGGCGGCGCCTCAC
AGAACGATGCACTGCCTCACTCGGGTGCTAATGGCAGCGGTGCCAACGCC
GCCGCTGCCGCCGCTGCAGCTTACTACAGCAATTATCCAGCATCGCTCGC
CGAGCAGTACGGCGCGTACTACAATAACCCCCAGTGGCAGCAGTATTACG
CTGCGATGGGCTACAACTTCAACTTCCCGCAGAGTTATAATCCGTACCAG
CAGTATTTGCAAGCGTACATGAGCACACAAGCTTCGGCAAATGGCGTTGG
TGGTAGTGCGGGTATGCCTGCGAATGCCGCCTCGCCAAACGCTCCGGGCG
CCGGAGGATACGATAATGCACATGGATCCGGACGATATGGCGGTGGACAC
GGTGGGGGCCATGGCGGCGGAGGAGGTCCAAGTCTGAGACGTTCCTCACG
GCGAGATGACCGATATCACCCGTACCGCTAA
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