Gvermi774.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi774.t1
Unique NameGvermi774.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length261
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:172812..173594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.K0SHX0
PFAMsRibosomal_L27A
Max annot lvl2836|Bacillariophyta
Evalue2.22e-67
EggNOG OGsCOG0200@1|root,KOG0846@2759|Eukaryota,2XC5D@2836|Bacillariophyta
DescriptionPfam:Ribosomal_L18e
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi774Gvermi774Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 172812..173594 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi774.t1.stop1Gvermi774.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 172812..172814 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi774.t1.CDS1Gvermi774.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 172812..173594 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi774.t1.exon1Gvermi774.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 172812..173594 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi774.t1.start1Gvermi774.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 173592..173594 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi774.t1Gvermi774.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 172812..173594 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi774.t1 ID=Gvermi774.t1|Name=Gvermi774.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=261bp
MQPSFIAPLGGAPKHATYIGLRPATCRLPSRAPVVARPALHVTPSAKIFD
WKKRQDPDHGKLPEEDEGTFKFTNLKPAPGSRHRKSRKGRGDAAGQGARC
GFGMRGQKSRSGRSVRPGFEGGQTPLYRRLPKFVGRPMGPGHKKTRYALM
KIEHLNGCEEGEIVTFEGLKEKGIMTKQKLKIWKVVGGTELTVRNLTVKA
HAFTTSAVEAIEGAGGTCVLISPTTGKDIVMEEDEVDNAVDGSASEVGES
SEDSETGKEA*
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spliced messenger RNA

>Gvermi774.t1 ID=Gvermi774.t1|Name=Gvermi774.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=783bp|location=Sequence derived from alignment at ScGOVlb_2952:172812..173594- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACCCTCCTTTATCGCGCCGCTGGGCGGTGCCCCAAAGCACGCAAC
CTACATCGGCCTTCGTCCGGCAACATGCCGCCTTCCCTCACGAGCACCAG
TGGTAGCTCGTCCCGCACTCCACGTTACCCCCTCGGCGAAGATCTTCGAT
TGGAAGAAGCGTCAGGACCCCGACCATGGAAAGCTTCCCGAGGAGGATGA
AGGAACTTTCAAGTTCACCAACCTCAAACCTGCTCCAGGCTCACGTCATC
GCAAATCGCGCAAGGGGCGTGGCGACGCTGCGGGACAAGGCGCACGATGC
GGTTTTGGAATGCGTGGCCAGAAGAGTCGTTCGGGTCGATCTGTGCGTCC
TGGCTTCGAGGGTGGTCAAACTCCATTGTATAGACGACTCCCAAAATTTG
TGGGAAGGCCAATGGGGCCTGGCCATAAGAAAACCAGGTATGCTCTTATG
AAGATTGAGCATCTGAATGGCTGTGAGGAGGGTGAGATTGTCACTTTTGA
GGGCCTTAAGGAAAAGGGAATCATGACCAAGCAGAAGCTTAAAATCTGGA
AGGTGGTAGGCGGCACCGAATTGACCGTCCGGAACCTTACTGTCAAAGCT
CATGCATTTACGACATCTGCTGTCGAGGCCATCGAAGGAGCTGGCGGAAC
GTGTGTTCTGATTTCCCCTACAACTGGGAAGGACATCGTTATGGAAGAAG
ATGAGGTGGATAACGCCGTTGACGGGAGCGCTTCCGAAGTAGGCGAAAGC
TCGGAGGACTCGGAGACAGGGAAAGAAGCATAG
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protein sequence of Gvermi774.t1

>Gvermi774.t1 ID=Gvermi774.t1|Name=Gvermi774.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=261bp
MQPSFIAPLGGAPKHATYIGLRPATCRLPSRAPVVARPALHVTPSAKIFD
WKKRQDPDHGKLPEEDEGTFKFTNLKPAPGSRHRKSRKGRGDAAGQGARC
GFGMRGQKSRSGRSVRPGFEGGQTPLYRRLPKFVGRPMGPGHKKTRYALM
KIEHLNGCEEGEIVTFEGLKEKGIMTKQKLKIWKVVGGTELTVRNLTVKA
HAFTTSAVEAIEGAGGTCVLISPTTGKDIVMEEDEVDNAVDGSASEVGES
SEDSETGKEA*
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mRNA from alignment at ScGOVlb_2952:172812..173594-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi774.t1 ID=Gvermi774.t1|Name=Gvermi774.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=783bp|location=Sequence derived from alignment at ScGOVlb_2952:172812..173594- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAACCCTCCTTTATCGCGCCGCTGGGCGGTGCCCCAAAGCACGCAAC
CTACATCGGCCTTCGTCCGGCAACATGCCGCCTTCCCTCACGAGCACCAG
TGGTAGCTCGTCCCGCACTCCACGTTACCCCCTCGGCGAAGATCTTCGAT
TGGAAGAAGCGTCAGGACCCCGACCATGGAAAGCTTCCCGAGGAGGATGA
AGGAACTTTCAAGTTCACCAACCTCAAACCTGCTCCAGGCTCACGTCATC
GCAAATCGCGCAAGGGGCGTGGCGACGCTGCGGGACAAGGCGCACGATGC
GGTTTTGGAATGCGTGGCCAGAAGAGTCGTTCGGGTCGATCTGTGCGTCC
TGGCTTCGAGGGTGGTCAAACTCCATTGTATAGACGACTCCCAAAATTTG
TGGGAAGGCCAATGGGGCCTGGCCATAAGAAAACCAGGTATGCTCTTATG
AAGATTGAGCATCTGAATGGCTGTGAGGAGGGTGAGATTGTCACTTTTGA
GGGCCTTAAGGAAAAGGGAATCATGACCAAGCAGAAGCTTAAAATCTGGA
AGGTGGTAGGCGGCACCGAATTGACCGTCCGGAACCTTACTGTCAAAGCT
CATGCATTTACGACATCTGCTGTCGAGGCCATCGAAGGAGCTGGCGGAAC
GTGTGTTCTGATTTCCCCTACAACTGGGAAGGACATCGTTATGGAAGAAG
ATGAGGTGGATAACGCCGTTGACGGGAGCGCTTCCGAAGTAGGCGAAAGC
TCGGAGGACTCGGAGACAGGGAAAGAAGCATAG
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Coding sequence (CDS) from alignment at ScGOVlb_2952:172812..173594-

>Gvermi774.t1 ID=Gvermi774.t1|Name=Gvermi774.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=783bp|location=Sequence derived from alignment at ScGOVlb_2952:172812..173594- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAACCCTCCTTTATCGCGCCGCTGGGCGGTGCCCCAAAGCACGCAAC
CTACATCGGCCTTCGTCCGGCAACATGCCGCCTTCCCTCACGAGCACCAG
TGGTAGCTCGTCCCGCACTCCACGTTACCCCCTCGGCGAAGATCTTCGAT
TGGAAGAAGCGTCAGGACCCCGACCATGGAAAGCTTCCCGAGGAGGATGA
AGGAACTTTCAAGTTCACCAACCTCAAACCTGCTCCAGGCTCACGTCATC
GCAAATCGCGCAAGGGGCGTGGCGACGCTGCGGGACAAGGCGCACGATGC
GGTTTTGGAATGCGTGGCCAGAAGAGTCGTTCGGGTCGATCTGTGCGTCC
TGGCTTCGAGGGTGGTCAAACTCCATTGTATAGACGACTCCCAAAATTTG
TGGGAAGGCCAATGGGGCCTGGCCATAAGAAAACCAGGTATGCTCTTATG
AAGATTGAGCATCTGAATGGCTGTGAGGAGGGTGAGATTGTCACTTTTGA
GGGCCTTAAGGAAAAGGGAATCATGACCAAGCAGAAGCTTAAAATCTGGA
AGGTGGTAGGCGGCACCGAATTGACCGTCCGGAACCTTACTGTCAAAGCT
CATGCATTTACGACATCTGCTGTCGAGGCCATCGAAGGAGCTGGCGGAAC
GTGTGTTCTGATTTCCCCTACAACTGGGAAGGACATCGTTATGGAAGAAG
ATGAGGTGGATAACGCCGTTGACGGGAGCGCTTCCGAAGTAGGCGAAAGC
TCGGAGGACTCGGAGACAGGGAAAGAAGCATAG
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