Gvermi870.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi870.t1
Unique NameGvermi870.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length549
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:748752..751409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi870Gvermi870Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 748752..751409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi870.t1Gvermi870.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 748752..751409 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi870.t1.stop1Gvermi870.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 748752..748754 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi870.t1.CDS1Gvermi870.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 748752..748924 -
Gvermi870.t1.CDS2Gvermi870.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 749936..751409 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi870.t1.exon1Gvermi870.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 748752..748924 -
Gvermi870.t1.exon2Gvermi870.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 749936..751409 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi870.t1.intron1Gvermi870.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2952 748925..749935 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi870.t1.start1Gvermi870.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 751407..751409 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi870.t1 ID=Gvermi870.t1|Name=Gvermi870.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=549bp
MLHRPVPSRDMQRASVTGKRFRSYRPRSRIVYVRFAFFVVFLVAFVLFKP
DLRIFHQQRNSLRASVPIDTELSADEEGLHADDGRSSDGPYDNLRLRDAS
DLDGNMEFQDDSSHPFLHKSLRDRRTKHSFFHDQNLLMHHIHHFKSEHSA
NPHREQTYNEQIESIDRHQADHKPADSHLESFHSLDGHNSLGHRETQKTF
PGVHDISGSVGGPAHHHAPAVRAVSVDEQDGDADDSDVQGVDIGADESQA
NTDREIPKSVERMEADDDNTLKDQSESEQIDDARTGQWSSNDAEAGDDEA
DNDGAHTDNSVEDISQIIAEQGSDVQKSVEQKDGSHANHRGENEVQSDGG
LNKKHKSVDEHHDDALVNHGPRDDIQSSDRRVDESHRSELREDLSPTRDE
SGEEAQDSNSQGDEDQAGEGLGNDTRTHDDQNADNQAGFGHLAGGQIIDA
QDDDDKTERRKVEDVEGDGRPGDGSMAIGGERVVTQAENEELNIRNDAVG
HGDNHNSVPSTLKTSESLNRNQQLVIQNVQKTLGEDPRIPNGKSMGQI*
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spliced messenger RNA

>Gvermi870.t1 ID=Gvermi870.t1|Name=Gvermi870.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1647bp|location=Sequence derived from alignment at ScGOVlb_2952:748752..751409- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCATCGACCAGTTCCATCACGCGACATGCAACGTGCCTCCGTGAC
TGGCAAGCGTTTTCGCTCATATAGACCACGATCTCGCATTGTCTACGTAC
GGTTTGCATTCTTCGTTGTCTTTTTGGTGGCATTTGTGCTCTTCAAACCA
GACTTGAGGATCTTCCATCAGCAACGAAATTCCTTGCGCGCTTCTGTTCC
CATAGATACGGAGCTTTCAGCGGACGAAGAAGGACTTCATGCAGATGATG
GTCGGTCGAGTGATGGCCCTTATGATAACTTGCGTTTACGAGACGCGTCA
GATTTGGATGGAAATATGGAATTTCAAGATGATTCTTCTCATCCTTTTCT
TCATAAATCTCTGCGTGACCGCCGTACCAAGCACTCTTTCTTTCATGACC
AGAATTTGTTAATGCATCATATTCATCACTTCAAATCTGAACACAGTGCA
AACCCTCATCGCGAACAGACCTATAATGAACAGATCGAATCTATAGACAG
ACATCAAGCTGATCACAAACCAGCCGACAGTCATCTAGAATCTTTTCACA
GTCTTGACGGCCACAACTCTTTGGGGCATCGCGAAACTCAAAAAACTTTT
CCGGGTGTGCACGATATATCAGGTAGCGTGGGCGGTCCTGCTCATCATCA
CGCCCCGGCGGTTCGTGCGGTCAGCGTTGATGAGCAAGATGGTGATGCGG
ACGATAGCGACGTTCAGGGTGTTGACATAGGCGCTGATGAATCTCAAGCT
AACACTGATCGAGAAATTCCGAAAAGCGTTGAACGCATGGAAGCTGATGA
TGACAATACCTTAAAAGATCAATCTGAAAGTGAGCAAATTGATGATGCTC
GAACCGGCCAGTGGTCAAGTAACGACGCCGAAGCAGGCGATGATGAAGCT
GATAATGATGGCGCTCACACTGACAATAGTGTTGAAGATATCTCTCAAAT
AATTGCTGAACAAGGTTCTGACGTACAGAAGAGCGTTGAACAAAAAGATG
GCTCTCACGCAAATCATCGAGGGGAAAATGAAGTTCAATCCGATGGTGGA
CTAAACAAGAAGCATAAAAGTGTTGACGAACACCATGATGATGCCCTTGT
CAATCACGGACCGAGGGATGATATCCAAAGCAGTGATCGAAGAGTTGACG
AATCTCACAGGAGTGAGTTAAGAGAGGATCTCTCTCCAACCCGCGATGAA
AGCGGTGAGGAAGCACAGGATTCTAACAGCCAAGGAGATGAAGACCAGGC
AGGTGAAGGGTTAGGAAATGACACTCGGACTCATGATGACCAAAATGCTG
ATAATCAAGCTGGTTTTGGACACCTCGCTGGTGGTCAAATCATTGACGCA
CAAGATGATGACGATAAAACCGAAAGGAGAAAAGTCGAAGACGTGGAGGG
TGATGGTAGACCAGGTGATGGCAGCATGGCCATTGGTGGGGAAAGAGTTG
TTACGCAAGCTGAGAATGAGGAACTGAATATTCGCAATGACGCTGTTGGT
CATGGAGATAATCATAACAGTGTCCCATCTACTCTTAAAACTTCGGAATC
CCTGAACCGTAATCAACAGCTCGTTATACAAAACGTGCAGAAAACTCTTG
GCGAGGATCCGCGAATTCCTAATGGAAAGTCGATGGGTCAAATCTAA
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protein sequence of Gvermi870.t1

>Gvermi870.t1 ID=Gvermi870.t1|Name=Gvermi870.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=549bp
MLHRPVPSRDMQRASVTGKRFRSYRPRSRIVYVRFAFFVVFLVAFVLFKP
DLRIFHQQRNSLRASVPIDTELSADEEGLHADDGRSSDGPYDNLRLRDAS
DLDGNMEFQDDSSHPFLHKSLRDRRTKHSFFHDQNLLMHHIHHFKSEHSA
NPHREQTYNEQIESIDRHQADHKPADSHLESFHSLDGHNSLGHRETQKTF
PGVHDISGSVGGPAHHHAPAVRAVSVDEQDGDADDSDVQGVDIGADESQA
NTDREIPKSVERMEADDDNTLKDQSESEQIDDARTGQWSSNDAEAGDDEA
DNDGAHTDNSVEDISQIIAEQGSDVQKSVEQKDGSHANHRGENEVQSDGG
LNKKHKSVDEHHDDALVNHGPRDDIQSSDRRVDESHRSELREDLSPTRDE
SGEEAQDSNSQGDEDQAGEGLGNDTRTHDDQNADNQAGFGHLAGGQIIDA
QDDDDKTERRKVEDVEGDGRPGDGSMAIGGERVVTQAENEELNIRNDAVG
HGDNHNSVPSTLKTSESLNRNQQLVIQNVQKTLGEDPRIPNGKSMGQI*
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mRNA from alignment at ScGOVlb_2952:748752..751409-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi870.t1 ID=Gvermi870.t1|Name=Gvermi870.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2658bp|location=Sequence derived from alignment at ScGOVlb_2952:748752..751409- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTCATCGACCAGTTCCATCACGCGACATGCAACGTGCCTCCGTGAC
TGGCAAGCGTTTTCGCTCATATAGACCACGATCTCGCATTGTCTACGTAC
GGTTTGCATTCTTCGTTGTCTTTTTGGTGGCATTTGTGCTCTTCAAACCA
GACTTGAGGATCTTCCATCAGCAACGAAATTCCTTGCGCGCTTCTGTTCC
CATAGATACGGAGCTTTCAGCGGACGAAGAAGGACTTCATGCAGATGATG
GTCGGTCGAGTGATGGCCCTTATGATAACTTGCGTTTACGAGACGCGTCA
GATTTGGATGGAAATATGGAATTTCAAGATGATTCTTCTCATCCTTTTCT
TCATAAATCTCTGCGTGACCGCCGTACCAAGCACTCTTTCTTTCATGACC
AGAATTTGTTAATGCATCATATTCATCACTTCAAATCTGAACACAGTGCA
AACCCTCATCGCGAACAGACCTATAATGAACAGATCGAATCTATAGACAG
ACATCAAGCTGATCACAAACCAGCCGACAGTCATCTAGAATCTTTTCACA
GTCTTGACGGCCACAACTCTTTGGGGCATCGCGAAACTCAAAAAACTTTT
CCGGGTGTGCACGATATATCAGGTAGCGTGGGCGGTCCTGCTCATCATCA
CGCCCCGGCGGTTCGTGCGGTCAGCGTTGATGAGCAAGATGGTGATGCGG
ACGATAGCGACGTTCAGGGTGTTGACATAGGCGCTGATGAATCTCAAGCT
AACACTGATCGAGAAATTCCGAAAAGCGTTGAACGCATGGAAGCTGATGA
TGACAATACCTTAAAAGATCAATCTGAAAGTGAGCAAATTGATGATGCTC
GAACCGGCCAGTGGTCAAGTAACGACGCCGAAGCAGGCGATGATGAAGCT
GATAATGATGGCGCTCACACTGACAATAGTGTTGAAGATATCTCTCAAAT
AATTGCTGAACAAGGTTCTGACGTACAGAAGAGCGTTGAACAAAAAGATG
GCTCTCACGCAAATCATCGAGGGGAAAATGAAGTTCAATCCGATGGTGGA
CTAAACAAGAAGCATAAAAGTGTTGACGAACACCATGATGATGCCCTTGT
CAATCACGGACCGAGGGATGATATCCAAAGCAGTGATCGAAGAGTTGACG
AATCTCACAGGAGTGAGTTAAGAGAGGATCTCTCTCCAACCCGCGATGAA
AGCGGTGAGGAAGCACAGGATTCTAACAGCCAAGGAGATGAAGACCAGGC
AGGTGAAGGGTTAGGAAATGACACTCGGACTCATGATGACCAAAATGCTG
ATAATCAAGCTGGTTTTGGACACCTCGCTGGTGGTCAAATCATTGACGCA
CAAGATGATGACGATAAAACCGAAAGGAGAAAAGTCGAAGACGTGGAGGG
TGATGGTAGACCAGGTGATGGCAGCATGGCCATTGGTGGGGAAAGAGTTG
TTACGCAAGCTGAGAATGAGGAACGTGAAGGTATACAAGCCGGTGCTGGA
CAGGCTGACGAAAAACTGTCGGATGATAAAAACGATGACNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATGACGCA
CAAGTCAAAGAGGAGCGGATCAAGGACGATCACAACAAGAACATACGGGA
CAAAAACGTACAGGTCCATGACACTCGGGACAACGATACGCTAGACAAAG
ATTTATATGGGGAAGACAAGTTGGTTAATAATCGTCAAGGTAATCAAGTG
ATCAACAACAAACTACCATTACATCCCTCCATTCACGTGCAACAGTCAGA
TCTTGCTTTCTCAGAACCACAACATCGATTTGACGCACCTCAACCCGTTC
ATGCTTTGAAGGTATCGCACGTAGGATCCCAACATCAATTAACGGATCCG
CAAATTGTTCAAAGAACAGCTCTCATGACGGATTCTGGGCTAACAAACAT
TCAAAAACAGGCCCTTCGAGATCGTGATACATATTCCGCTCAGAACGTGC
ATGCGGATAGCGGTTTTCCTGGTCCAAAACAATTTGTCGAGGCGCTTACC
CATCAACCGACTGTTCATTCCGACACGAATAATGCTATCCAGAACCTTCC
GAGAGGATATGGCGGAAATCTACACATGCAGGGATCTGAGCATAAATCGA
ACTTCCCATTGCACAACCTCCGCTCCCAACCTCTTTTACCTCAGCTAAAT
CAACGACCTGTGCGAGTGCAGGATGTCATATACGGAGAGAGACATCTGCA
TGAGAACAGTGTTAGAAGTCGCGGTCTTCCTATATCCGTGGAGGGAAATC
ACGATAAGGCACTGGATAACAGTGCGATCCCGAGGCGACCACGTATCAGG
GCCTCAATTTCTCGTGAAGAGCCACCAAATGCCTATCAAATTCTTCGTCA
CTCAAACCAACCGACTGATACACTTCGACAAACAGTGAATATTCGCAATG
ACGCTGTTGGTCATGGAGATAATCATAACAGTGTCCCATCTACTCTTAAA
ACTTCGGAATCCCTGAACCGTAATCAACAGCTCGTTATACAAAACGTGCA
GAAAACTCTTGGCGAGGATCCGCGAATTCCTAATGGAAAGTCGATGGGTC
AAATCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:748752..751409-

>Gvermi870.t1 ID=Gvermi870.t1|Name=Gvermi870.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1647bp|location=Sequence derived from alignment at ScGOVlb_2952:748752..751409- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTCATCGACCAGTTCCATCACGCGACATGCAACGTGCCTCCGTGAC
TGGCAAGCGTTTTCGCTCATATAGACCACGATCTCGCATTGTCTACGTAC
GGTTTGCATTCTTCGTTGTCTTTTTGGTGGCATTTGTGCTCTTCAAACCA
GACTTGAGGATCTTCCATCAGCAACGAAATTCCTTGCGCGCTTCTGTTCC
CATAGATACGGAGCTTTCAGCGGACGAAGAAGGACTTCATGCAGATGATG
GTCGGTCGAGTGATGGCCCTTATGATAACTTGCGTTTACGAGACGCGTCA
GATTTGGATGGAAATATGGAATTTCAAGATGATTCTTCTCATCCTTTTCT
TCATAAATCTCTGCGTGACCGCCGTACCAAGCACTCTTTCTTTCATGACC
AGAATTTGTTAATGCATCATATTCATCACTTCAAATCTGAACACAGTGCA
AACCCTCATCGCGAACAGACCTATAATGAACAGATCGAATCTATAGACAG
ACATCAAGCTGATCACAAACCAGCCGACAGTCATCTAGAATCTTTTCACA
GTCTTGACGGCCACAACTCTTTGGGGCATCGCGAAACTCAAAAAACTTTT
CCGGGTGTGCACGATATATCAGGTAGCGTGGGCGGTCCTGCTCATCATCA
CGCCCCGGCGGTTCGTGCGGTCAGCGTTGATGAGCAAGATGGTGATGCGG
ACGATAGCGACGTTCAGGGTGTTGACATAGGCGCTGATGAATCTCAAGCT
AACACTGATCGAGAAATTCCGAAAAGCGTTGAACGCATGGAAGCTGATGA
TGACAATACCTTAAAAGATCAATCTGAAAGTGAGCAAATTGATGATGCTC
GAACCGGCCAGTGGTCAAGTAACGACGCCGAAGCAGGCGATGATGAAGCT
GATAATGATGGCGCTCACACTGACAATAGTGTTGAAGATATCTCTCAAAT
AATTGCTGAACAAGGTTCTGACGTACAGAAGAGCGTTGAACAAAAAGATG
GCTCTCACGCAAATCATCGAGGGGAAAATGAAGTTCAATCCGATGGTGGA
CTAAACAAGAAGCATAAAAGTGTTGACGAACACCATGATGATGCCCTTGT
CAATCACGGACCGAGGGATGATATCCAAAGCAGTGATCGAAGAGTTGACG
AATCTCACAGGAGTGAGTTAAGAGAGGATCTCTCTCCAACCCGCGATGAA
AGCGGTGAGGAAGCACAGGATTCTAACAGCCAAGGAGATGAAGACCAGGC
AGGTGAAGGGTTAGGAAATGACACTCGGACTCATGATGACCAAAATGCTG
ATAATCAAGCTGGTTTTGGACACCTCGCTGGTGGTCAAATCATTGACGCA
CAAGATGATGACGATAAAACCGAAAGGAGAAAAGTCGAAGACGTGGAGGG
TGATGGTAGACCAGGTGATGGCAGCATGGCCATTGGTGGGGAAAGAGTTG
TTACGCAAGCTGAGAATGAGGAACTGAATATTCGCAATGACGCTGTTGGT
CATGGAGATAATCATAACAGTGTCCCATCTACTCTTAAAACTTCGGAATC
CCTGAACCGTAATCAACAGCTCGTTATACAAAACGTGCAGAAAACTCTTG
GCGAGGATCCGCGAATTCCTAATGGAAAGTCGATGGGTCAAATCTAA
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