Gvermi795.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi795.t1
Unique NameGvermi795.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length538
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:302391..304004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi795Gvermi795Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 302391..304004 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi795.t1.stop1Gvermi795.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 302391..302393 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi795.t1.CDS1Gvermi795.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 302391..304004 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi795.t1.exon1Gvermi795.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 302391..304004 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi795.t1.start1Gvermi795.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 304002..304004 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi795.t1Gvermi795.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 302391..304004 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi795.t1 ID=Gvermi795.t1|Name=Gvermi795.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=538bp
MKVCAFTTKSAYVPQSRRKRTGAPDKTWPKCVPRNVLLDQKFNTECTDCG
TSHGHASKWDKMSRAELFHLIEEQMGIALNAHDTMTKEHTISFVTELLEA
RYVDVLPCLKPNFIRFICCALRPNLENQSFVYTVCRFITVLGKNSADHCI
FMSQNIDVILGEDLLRYNFEGSQYIHKTIIETFTVLLNASEPHRAALLEP
TSRGIEWAFAYLRRWNICEEMQLTLLEYFRTLLEDEEEIKLETVKRGLLV
DLSYALECFPSSYKIKYLAIELLITLTEKSGEIRKQSVEEGHLKHILRNL
QLLRGTPEMVRLVMQAIENFSSDLDTKNIMGKVGFVSELMQTLRKMIEPV
GDIYSKPQREALCRVIVTLRGVVYGSKINRYLLMDATHIKTIKEIVMKYK
FDENIVEAALRVLEALVSDLYHGEKIKPQFLLETSKREVLEDIIRFTTSI
LSANKGKSRCAELACSVLYQICLMGHHDAVFETCPELHRLVPEAIQACFE
NEVVLNIALSLSRYTNNNSGDSFSHIFRNHRNKHVFL*
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spliced messenger RNA

>Gvermi795.t1 ID=Gvermi795.t1|Name=Gvermi795.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at ScGOVlb_2952:302391..304004- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGTCTGTGCTTTTACAACCAAGTCCGCATATGTACCACAGTCTAG
GAGAAAAAGAACAGGTGCTCCTGATAAGACTTGGCCCAAGTGTGTTCCGC
GAAATGTTCTCCTTGACCAAAAATTCAACACAGAGTGCACTGATTGCGGA
ACAAGTCATGGTCATGCTTCCAAATGGGATAAGATGTCTCGGGCCGAGCT
TTTTCATCTCATAGAAGAGCAAATGGGTATTGCTCTCAATGCGCACGACA
CAATGACTAAGGAGCATACGATATCGTTCGTAACAGAACTCTTGGAAGCT
CGTTATGTCGATGTACTACCGTGCTTGAAGCCGAATTTCATTCGATTCAT
ATGCTGCGCCTTAAGACCAAACTTAGAAAACCAATCTTTCGTCTACACTG
TTTGTCGCTTCATTACCGTCTTGGGAAAGAATTCTGCGGATCATTGTATC
TTTATGTCGCAGAATATCGACGTAATCTTAGGTGAAGACCTGCTTCGATA
TAATTTCGAAGGTTCGCAGTACATCCACAAAACTATCATCGAAACCTTCA
CGGTCTTACTGAACGCCAGTGAGCCGCACCGAGCTGCTTTATTAGAGCCC
ACGTCACGGGGGATCGAGTGGGCCTTTGCATACTTGCGTAGATGGAATAT
CTGTGAAGAAATGCAACTTACGCTGCTCGAGTACTTTCGAACTTTACTCG
AGGATGAAGAAGAAATAAAGCTTGAAACTGTGAAGAGAGGCTTGCTAGTC
GACCTGTCTTATGCCTTGGAATGTTTTCCGTCATCGTACAAGATAAAATA
TCTTGCAATTGAATTGCTCATCACTCTCACGGAAAAATCTGGAGAAATCC
GAAAACAAAGTGTTGAAGAAGGGCATCTGAAACACATTCTTCGTAACTTA
CAATTGTTGCGAGGAACACCTGAAATGGTTCGTTTAGTCATGCAGGCCAT
TGAGAACTTTAGCAGTGACCTTGACACTAAAAATATTATGGGAAAGGTCG
GTTTTGTCAGCGAGTTGATGCAGACGCTCAGAAAAATGATTGAGCCTGTT
GGAGACATTTACTCTAAACCCCAACGTGAAGCACTTTGTCGGGTTATAGT
GACACTTCGAGGAGTTGTTTATGGAAGCAAGATCAATCGATACTTATTGA
TGGACGCGACCCACATCAAGACCATTAAGGAGATCGTCATGAAATACAAG
TTCGATGAAAATATCGTGGAGGCTGCTCTCAGAGTTCTGGAAGCGTTAGT
GAGCGACTTGTATCATGGTGAGAAAATAAAACCCCAATTTCTTTTGGAGA
CATCAAAGAGGGAGGTTCTCGAGGATATAATACGATTCACAACATCGATT
CTCTCAGCAAATAAGGGAAAATCACGATGCGCGGAGCTTGCATGCTCAGT
TCTCTACCAAATTTGCCTCATGGGACACCATGATGCTGTTTTTGAGACGT
GTCCTGAGCTTCACAGACTTGTACCAGAAGCGATTCAGGCATGTTTCGAG
AACGAAGTTGTGCTTAACATTGCTCTCTCGCTTAGCCGCTATACAAATAA
TAATTCCGGTGACAGCTTTTCTCACATTTTCCGCAATCACAGAAATAAAC
ATGTTTTCCTGTAG
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protein sequence of Gvermi795.t1

>Gvermi795.t1 ID=Gvermi795.t1|Name=Gvermi795.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=538bp
MKVCAFTTKSAYVPQSRRKRTGAPDKTWPKCVPRNVLLDQKFNTECTDCG
TSHGHASKWDKMSRAELFHLIEEQMGIALNAHDTMTKEHTISFVTELLEA
RYVDVLPCLKPNFIRFICCALRPNLENQSFVYTVCRFITVLGKNSADHCI
FMSQNIDVILGEDLLRYNFEGSQYIHKTIIETFTVLLNASEPHRAALLEP
TSRGIEWAFAYLRRWNICEEMQLTLLEYFRTLLEDEEEIKLETVKRGLLV
DLSYALECFPSSYKIKYLAIELLITLTEKSGEIRKQSVEEGHLKHILRNL
QLLRGTPEMVRLVMQAIENFSSDLDTKNIMGKVGFVSELMQTLRKMIEPV
GDIYSKPQREALCRVIVTLRGVVYGSKINRYLLMDATHIKTIKEIVMKYK
FDENIVEAALRVLEALVSDLYHGEKIKPQFLLETSKREVLEDIIRFTTSI
LSANKGKSRCAELACSVLYQICLMGHHDAVFETCPELHRLVPEAIQACFE
NEVVLNIALSLSRYTNNNSGDSFSHIFRNHRNKHVFL*
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mRNA from alignment at ScGOVlb_2952:302391..304004-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi795.t1 ID=Gvermi795.t1|Name=Gvermi795.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at ScGOVlb_2952:302391..304004- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGGTCTGTGCTTTTACAACCAAGTCCGCATATGTACCACAGTCTAG
GAGAAAAAGAACAGGTGCTCCTGATAAGACTTGGCCCAAGTGTGTTCCGC
GAAATGTTCTCCTTGACCAAAAATTCAACACAGAGTGCACTGATTGCGGA
ACAAGTCATGGTCATGCTTCCAAATGGGATAAGATGTCTCGGGCCGAGCT
TTTTCATCTCATAGAAGAGCAAATGGGTATTGCTCTCAATGCGCACGACA
CAATGACTAAGGAGCATACGATATCGTTCGTAACAGAACTCTTGGAAGCT
CGTTATGTCGATGTACTACCGTGCTTGAAGCCGAATTTCATTCGATTCAT
ATGCTGCGCCTTAAGACCAAACTTAGAAAACCAATCTTTCGTCTACACTG
TTTGTCGCTTCATTACCGTCTTGGGAAAGAATTCTGCGGATCATTGTATC
TTTATGTCGCAGAATATCGACGTAATCTTAGGTGAAGACCTGCTTCGATA
TAATTTCGAAGGTTCGCAGTACATCCACAAAACTATCATCGAAACCTTCA
CGGTCTTACTGAACGCCAGTGAGCCGCACCGAGCTGCTTTATTAGAGCCC
ACGTCACGGGGGATCGAGTGGGCCTTTGCATACTTGCGTAGATGGAATAT
CTGTGAAGAAATGCAACTTACGCTGCTCGAGTACTTTCGAACTTTACTCG
AGGATGAAGAAGAAATAAAGCTTGAAACTGTGAAGAGAGGCTTGCTAGTC
GACCTGTCTTATGCCTTGGAATGTTTTCCGTCATCGTACAAGATAAAATA
TCTTGCAATTGAATTGCTCATCACTCTCACGGAAAAATCTGGAGAAATCC
GAAAACAAAGTGTTGAAGAAGGGCATCTGAAACACATTCTTCGTAACTTA
CAATTGTTGCGAGGAACACCTGAAATGGTTCGTTTAGTCATGCAGGCCAT
TGAGAACTTTAGCAGTGACCTTGACACTAAAAATATTATGGGAAAGGTCG
GTTTTGTCAGCGAGTTGATGCAGACGCTCAGAAAAATGATTGAGCCTGTT
GGAGACATTTACTCTAAACCCCAACGTGAAGCACTTTGTCGGGTTATAGT
GACACTTCGAGGAGTTGTTTATGGAAGCAAGATCAATCGATACTTATTGA
TGGACGCGACCCACATCAAGACCATTAAGGAGATCGTCATGAAATACAAG
TTCGATGAAAATATCGTGGAGGCTGCTCTCAGAGTTCTGGAAGCGTTAGT
GAGCGACTTGTATCATGGTGAGAAAATAAAACCCCAATTTCTTTTGGAGA
CATCAAAGAGGGAGGTTCTCGAGGATATAATACGATTCACAACATCGATT
CTCTCAGCAAATAAGGGAAAATCACGATGCGCGGAGCTTGCATGCTCAGT
TCTCTACCAAATTTGCCTCATGGGACACCATGATGCTGTTTTTGAGACGT
GTCCTGAGCTTCACAGACTTGTACCAGAAGCGATTCAGGCATGTTTCGAG
AACGAAGTTGTGCTTAACATTGCTCTCTCGCTTAGCCGCTATACAAATAA
TAATTCCGGTGACAGCTTTTCTCACATTTTCCGCAATCACAGAAATAAAC
ATGTTTTCCTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_2952:302391..304004-

>Gvermi795.t1 ID=Gvermi795.t1|Name=Gvermi795.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1614bp|location=Sequence derived from alignment at ScGOVlb_2952:302391..304004- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGGTCTGTGCTTTTACAACCAAGTCCGCATATGTACCACAGTCTAG
GAGAAAAAGAACAGGTGCTCCTGATAAGACTTGGCCCAAGTGTGTTCCGC
GAAATGTTCTCCTTGACCAAAAATTCAACACAGAGTGCACTGATTGCGGA
ACAAGTCATGGTCATGCTTCCAAATGGGATAAGATGTCTCGGGCCGAGCT
TTTTCATCTCATAGAAGAGCAAATGGGTATTGCTCTCAATGCGCACGACA
CAATGACTAAGGAGCATACGATATCGTTCGTAACAGAACTCTTGGAAGCT
CGTTATGTCGATGTACTACCGTGCTTGAAGCCGAATTTCATTCGATTCAT
ATGCTGCGCCTTAAGACCAAACTTAGAAAACCAATCTTTCGTCTACACTG
TTTGTCGCTTCATTACCGTCTTGGGAAAGAATTCTGCGGATCATTGTATC
TTTATGTCGCAGAATATCGACGTAATCTTAGGTGAAGACCTGCTTCGATA
TAATTTCGAAGGTTCGCAGTACATCCACAAAACTATCATCGAAACCTTCA
CGGTCTTACTGAACGCCAGTGAGCCGCACCGAGCTGCTTTATTAGAGCCC
ACGTCACGGGGGATCGAGTGGGCCTTTGCATACTTGCGTAGATGGAATAT
CTGTGAAGAAATGCAACTTACGCTGCTCGAGTACTTTCGAACTTTACTCG
AGGATGAAGAAGAAATAAAGCTTGAAACTGTGAAGAGAGGCTTGCTAGTC
GACCTGTCTTATGCCTTGGAATGTTTTCCGTCATCGTACAAGATAAAATA
TCTTGCAATTGAATTGCTCATCACTCTCACGGAAAAATCTGGAGAAATCC
GAAAACAAAGTGTTGAAGAAGGGCATCTGAAACACATTCTTCGTAACTTA
CAATTGTTGCGAGGAACACCTGAAATGGTTCGTTTAGTCATGCAGGCCAT
TGAGAACTTTAGCAGTGACCTTGACACTAAAAATATTATGGGAAAGGTCG
GTTTTGTCAGCGAGTTGATGCAGACGCTCAGAAAAATGATTGAGCCTGTT
GGAGACATTTACTCTAAACCCCAACGTGAAGCACTTTGTCGGGTTATAGT
GACACTTCGAGGAGTTGTTTATGGAAGCAAGATCAATCGATACTTATTGA
TGGACGCGACCCACATCAAGACCATTAAGGAGATCGTCATGAAATACAAG
TTCGATGAAAATATCGTGGAGGCTGCTCTCAGAGTTCTGGAAGCGTTAGT
GAGCGACTTGTATCATGGTGAGAAAATAAAACCCCAATTTCTTTTGGAGA
CATCAAAGAGGGAGGTTCTCGAGGATATAATACGATTCACAACATCGATT
CTCTCAGCAAATAAGGGAAAATCACGATGCGCGGAGCTTGCATGCTCAGT
TCTCTACCAAATTTGCCTCATGGGACACCATGATGCTGTTTTTGAGACGT
GTCCTGAGCTTCACAGACTTGTACCAGAAGCGATTCAGGCATGTTTCGAG
AACGAAGTTGTGCTTAACATTGCTCTCTCGCTTAGCCGCTATACAAATAA
TAATTCCGGTGACAGCTTTTCTCACATTTTCCGCAATCACAGAAATAAAC
ATGTTTTCCTGTAG
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