Gvermi804.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi804.t1
Unique NameGvermi804.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length136
Homology
BLAST of Gvermi804.t1 vs. uniprot
Match: R7QN04_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN04_CHOCR)

HSP 1 Score: 196 bits (499), Expect = 2.490e-56
Identity = 84/131 (64.12%), Postives = 109/131 (83.21%), Query Frame = 0
Query:    3 LDTDACKYQVGCALLQEQPKGGLQPIGNWSRSLTPTERNYSTSERECLAIVWAVLLLRPYLEGARFTLRTDHAPLKWILSLTDASGRLERWRLRLLEFEFDIVYRPGIKHQAADALSQISTDGEDKTPLED 133
            LDTDAC +QVGCALLQEQP GG +PIG WSR+LT  ERNY+T+E+ECLA+VW++L LRPYL G+ F LRTDH  L+W+L+L D+SGRL RWRLRL E+++++ YRPG+KHQ AD +S++ TDG D  P++D
Sbjct:  135 LDTDACGHQVGCALLQEQPDGGTRPIGYWSRALTDAERNYTTTEKECLAVVWSILTLRPYLYGSAFNLRTDHEALRWVLNLADSSGRLARWRLRLAEYDYEVQYRPGVKHQLADGVSRLRTDGGDTEPVDD 265          
BLAST of Gvermi804.t1 vs. uniprot
Match: R7Q7I0_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q7I0_CHOCR)

HSP 1 Score: 189 bits (480), Expect = 7.560e-56
Identity = 81/131 (61.83%), Postives = 107/131 (81.68%), Query Frame = 0
Query:    3 LDTDACKYQVGCALLQEQPKGGLQPIGNWSRSLTPTERNYSTSERECLAIVWAVLLLRPYLEGARFTLRTDHAPLKWILSLTDASGRLERWRLRLLEFEFDIVYRPGIKHQAADALSQISTDGEDKTPLED 133
            LDTDAC +QVGCALLQEQP GG +PIG WSR++T  ERNY+T+E+ECLA+VW++L LRPYL G+ F LRTDH  L+W+L+L D+SGRL RW LRL E+++++ Y PG+KHQ AD +S++ TDG D  P++D
Sbjct:   67 LDTDACGHQVGCALLQEQPDGGTRPIGYWSRAVTYAERNYTTTEKECLAVVWSILTLRPYLYGSAFNLRTDHEALRWVLNLADSSGRLARWLLRLAEYDYEVQYGPGVKHQLADGVSRLRTDGGDTEPVDD 197          
BLAST of Gvermi804.t1 vs. uniprot
Match: R7QKK5_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKK5_CHOCR)

HSP 1 Score: 194 bits (494), Expect = 8.170e-56
Identity = 84/131 (64.12%), Postives = 108/131 (82.44%), Query Frame = 0
Query:    3 LDTDACKYQVGCALLQEQPKGGLQPIGNWSRSLTPTERNYSTSERECLAIVWAVLLLRPYLEGARFTLRTDHAPLKWILSLTDASGRLERWRLRLLEFEFDIVYRPGIKHQAADALSQISTDGEDKTPLED 133
            LDTDAC +QVGCALLQEQP GG +PIG WSR+LT  ERNY+T+E+ECLA+VW++L LRPYL G+ F LRTDH  L+W+L+L D+SGRL RWRLRL E+++++ YRPG+KHQ AD  S++ TD ED  P++D
Sbjct:  269 LDTDACGHQVGCALLQEQPDGGARPIGYWSRALTDAERNYTTTEKECLAVVWSILTLRPYLYGSAFNLRTDHEALRWVLNLADSSGRLARWRLRLAEYDYEVQYRPGVKHQLADGESRLRTDREDTEPVDD 399          
BLAST of Gvermi804.t1 vs. uniprot
Match: R7QLF2_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLF2_CHOCR)

HSP 1 Score: 195 bits (496), Expect = 1.230e-55
Identity = 84/131 (64.12%), Postives = 108/131 (82.44%), Query Frame = 0
Query:    3 LDTDACKYQVGCALLQEQPKGGLQPIGNWSRSLTPTERNYSTSERECLAIVWAVLLLRPYLEGARFTLRTDHAPLKWILSLTDASGRLERWRLRLLEFEFDIVYRPGIKHQAADALSQISTDGEDKTPLED 133
            LDTDAC +QVGCALLQEQP GG +PIG WSR+LT  ERNY+T E+ECLA+VW++L LRPYL G+ F LRTDH  ++W+L+L D+SGRL RWRLRL E+ +++ YRPG+KHQ AD +S++ TDG D TP++D
Sbjct:  200 LDTDACGHQVGCALLQEQPDGGTRPIGYWSRALTNAERNYTTIEKECLAVVWSILTLRPYLYGSAFNLRTDHEAVRWVLNLADSSGRLARWRLRLAEYNYEVQYRPGVKHQLADGVSRLRTDGGDTTPVDD 330          
BLAST of Gvermi804.t1 vs. uniprot
Match: R7QJ93_CHOCR (Integrase catalytic domain-containing protein n=3 Tax=Chondrus crispus TaxID=2769 RepID=R7QJ93_CHOCR)

HSP 1 Score: 189 bits (479), Expect = 3.620e-54
Identity = 82/131 (62.60%), Postives = 104/131 (79.39%), Query Frame = 0
Query:    3 LDTDACKYQVGCALLQEQPKGGLQPIGNWSRSLTPTERNYSTSERECLAIVWAVLLLRPYLEGARFTLRTDHAPLKWILSLTDASGRLERWRLRLLEFEFDIVYRPGIKHQAADALSQISTDGEDKTPLED 133
            LDTDAC YQVGCALLQEQP G   PIG WSR+LT  E+NY+T+E+ECLA+VW++L LRPYL G  F LRTDH  L+W+L+L D+SGRL RWRLRL E+++++ YRPGIKHQ AD +S++  DG    P++D
Sbjct:   66 LDTDACAYQVGCALLQEQPSGDRLPIGYWSRALTDAEKNYTTTEKECLAVVWSILTLRPYLYGNTFDLRTDHEALRWVLNLADSSGRLARWRLRLAEYDYEVKYRPGIKHQLADGVSRLRVDGATSEPVDD 196          
BLAST of Gvermi804.t1 vs. uniprot
Match: R7QR94_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QR94_CHOCR)

HSP 1 Score: 172 bits (435), Expect = 2.950e-47
Identity = 82/131 (62.60%), Postives = 101/131 (77.10%), Query Frame = 0
Query:    3 LDTDACKYQVGCALLQEQPKGGLQPIGNWSRSLTPTERNYSTSERECLAIVWAVLLLRPYLEGARFTLRTDHAPLKWILSLTDASGRLERWRLRLLEFEFDIVYRPGIKHQAADALSQISTDGEDKTPLED 133
            LDTDAC +QVGC LLQ+Q      PI  WSR+LT  ER+Y+T+E+ECLAIVWA+LLLRPYLEG RFT+RTDH  L+W+L+L DA GRL R RLRL E++F + +R GIKHQAADAL ++ T G D + L D
Sbjct:  156 LDTDACDHQVGCTLLQDQEGPVYVPIRYWSRALTKQERDYTTTEKECLAIVWAILLLRPYLEGQRFTVRTDHDSLRWVLNLADAKGRLARCRLRLSEYDFIVEHRAGIKHQAADALWRLETTGLDTSTLRD 286          
BLAST of Gvermi804.t1 vs. uniprot
Match: UPI001E1E1407 (uncharacterized protein LOC123543642 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E1407)

HSP 1 Score: 170 bits (430), Expect = 2.180e-46
Identity = 73/124 (58.87%), Postives = 97/124 (78.23%), Query Frame = 0
Query:    1 MVLDTDACKYQVGCALLQEQPKGGLQPIGNWSRSLTPTERNYSTSERECLAIVWAVLLLRPYLEGARFTLRTDHAPLKWILSLTDASGRLERWRLRLLEFEFDIVYRPGIKHQAADALSQISTD 124
            + LDTDA  +Q+GC LLQ QP G  +PIG WSR+LT  E+NYST+E+ECLAIVWA+L LRPYLE  +F +RTDH  L+W+L+L+DA GRL RWRLRLLEF++++ Y PG  H  AD +S++ ++
Sbjct:  277 LTLDTDASDHQLGCCLLQTQPDGSQRPIGYWSRALTSAEKNYSTTEKECLAIVWAILHLRPYLEQQKFIIRTDHHSLRWVLNLSDAQGRLARWRLRLLEFDYEVQYHPGAMHHGADMMSRLQSE 400          
BLAST of Gvermi804.t1 vs. uniprot
Match: R7Q3M7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3M7_CHOCR)

HSP 1 Score: 163 bits (412), Expect = 2.190e-46
Identity = 76/123 (61.79%), Postives = 93/123 (75.61%), Query Frame = 0
Query:    3 LDTDACKYQVGCALLQEQPKGGLQPIGNWSRSLTPTERNYSTSERECLAIVWAVLLLRPYLEGARFTLRTDHAPLKWILSLTDASGRLERWRLRLLEFEFDIVYRPGIKHQAADALSQISTDG 125
            LDTDA   Q+GC LLQ+   G   P+G WSR+L+  ERNYST+E+ECLAIVWA+  LRPYLE  RFT+ TDH  L+W+++L DASGRL RWRLRL EF+FDI Y  GIK+  ADALS+I + G
Sbjct:   66 LDTDASDAQLGCTLLQQHEDGNRYPVGFWSRTLSSAERNYSTTEKECLAIVWAIQTLRPYLERERFTVNTDHHSLRWLMNLADASGRLARWRLRLAEFDFDITYVKGIKNCLADALSRIPSRG 188          
BLAST of Gvermi804.t1 vs. uniprot
Match: S0F3N3_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F3N3_CHOCR)

HSP 1 Score: 162 bits (411), Expect = 1.530e-45
Identity = 75/123 (60.98%), Postives = 93/123 (75.61%), Query Frame = 0
Query:    3 LDTDACKYQVGCALLQEQPKGGLQPIGNWSRSLTPTERNYSTSERECLAIVWAVLLLRPYLEGARFTLRTDHAPLKWILSLTDASGRLERWRLRLLEFEFDIVYRPGIKHQAADALSQISTDG 125
            LDTDA   Q+GC LLQ+   G   P+G WSR+L+  ERNYST+E+ECLAIVWA+  LRPYLE  RFT+ TDH  L+W+++L DASGRL RWRLRL EF+FD+ Y  GIK+  ADALS+I + G
Sbjct:   66 LDTDASDAQLGCTLLQQHEDGNRYPVGFWSRTLSSAERNYSTTEKECLAIVWAIQTLRPYLERERFTVNTDHHSLRWLMNLADASGRLARWRLRLAEFDFDVTYVKGIKNCLADALSRIQSIG 188          
BLAST of Gvermi804.t1 vs. uniprot
Match: R7QQA4_CHOCR (RT_RNaseH domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQA4_CHOCR)

HSP 1 Score: 158 bits (399), Expect = 1.880e-44
Identity = 71/121 (58.68%), Postives = 92/121 (76.03%), Query Frame = 0
Query:    2 VLDTDACKYQVGCALLQEQPK-GGLQPIGNWSRSLTPTERNYSTSERECLAIVWAVLLLRPYLEGARFTLRTDHAPLKWILSLTDASGRLERWRLRLLEFEFDIVYRPGIKHQAADALSQI 121
            ++DTDA  YQ+GC LLQE  +    +P+G WS SL  +ERNYS +EREC A+VWAV   RPY+EG +FT+RTDH  L+W++SLT++SGRL RWRLRL E++F I YRPG  HQ  DALS++
Sbjct:  127 MIDTDASAYQLGCTLLQEHDQPNDWRPVGYWSYSLKDSERNYSATERECFAVVWAVRTQRPYVEGTKFTVRTDHEALRWLMSLTESSGRLNRWRLRLAEYDFTIQYRPGRVHQVPDALSRL 247          
The following BLAST results are available for this feature:
BLAST of Gvermi804.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QN04_CHOCR2.490e-5664.12Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7Q7I0_CHOCR7.560e-5661.83Integrase catalytic domain-containing protein n=1 ... [more]
R7QKK5_CHOCR8.170e-5664.12Integrase catalytic domain-containing protein n=1 ... [more]
R7QLF2_CHOCR1.230e-5564.12Integrase catalytic domain-containing protein n=1 ... [more]
R7QJ93_CHOCR3.620e-5462.60Integrase catalytic domain-containing protein n=3 ... [more]
R7QR94_CHOCR2.950e-4762.60Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
UPI001E1E14072.180e-4658.87uncharacterized protein LOC123543642 n=1 Tax=Merce... [more]
R7Q3M7_CHOCR2.190e-4661.79Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
S0F3N3_CHOCR1.530e-4560.98Integrase catalytic domain-containing protein n=1 ... [more]
R7QQA4_CHOCR1.880e-4458.68RT_RNaseH domain-containing protein n=1 Tax=Chondr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041373Reverse transcriptase, RNase H-like domainPFAMPF17917RT_RNaseHcoord: 2..100
e-value: 9.5E-32
score: 109.4
NoneNo IPR availablePANTHERPTHR34072ENZYMATIC POLYPROTEIN-RELATEDcoord: 5..125
NoneNo IPR availableCDDcd09274RNase_HI_RT_Ty3coord: 2..119
e-value: 2.07054E-49
score: 152.262
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 2..107

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:414678..415085 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi804.t1Gvermi804.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_2952 414678..415085 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi804.t1 ID=Gvermi804.t1|Name=Gvermi804.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=136bp
MVLDTDACKYQVGCALLQEQPKGGLQPIGNWSRSLTPTERNYSTSERECL
AIVWAVLLLRPYLEGARFTLRTDHAPLKWILSLTDASGRLERWRLRLLEF
EFDIVYRPGIKHQAADALSQISTDGEDKTPLEDNC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041373RT_RNaseH
IPR043502DNA/RNA_pol_sf