Gvermi885.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi885.t1
Unique NameGvermi885.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length214
Homology
BLAST of Gvermi885.t1 vs. uniprot
Match: A0A2V3INT1_9FLOR (60S ribosomal protein L6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INT1_9FLOR)

HSP 1 Score: 346 bits (887), Expect = 3.470e-119
Identity = 175/213 (82.16%), Postives = 196/213 (92.02%), Query Frame = 0
Query:    1 MGLSRDARRRAKEAPTKPVLETVIKKIGGEKNGGERTVVVNKGAKWYPADDMKRPVPSRKHMHKPPKLRSSISPGTVLILLAGRLRGSRVIFLGQLPSGKLLVTGPYSVNRIPLRRVDQAYVIATSTALDVSAVDISKFDDAYFKRVKNKVKADVMETEEEEPKYSPTEERIADQKVVDQVLMPIIEKEPMMSSYLKSRFSLKRGMFPHAMNF 213
            MG SRDARRRAKEAPTKPVL+T+ KKIGGEKNGGERTV+VNKG KWYPADD+K+PVPSRKH HKPPKLRSSI PG+VLILLAGRL+G RVIFL QL SG LLVTGPYSVNRIPLRRV+QAYVIATST++DVSAVD+SKFDDAYFKRVK K  ADVMET+EE  KY+PTEERIADQK VDQVL+P+IEKEP+M+SYLK+RF+L+RGM PH M+F
Sbjct:    1 MGKSRDARRRAKEAPTKPVLQTITKKIGGEKNGGERTVIVNKGPKWYPADDIKKPVPSRKHAHKPPKLRSSIKPGSVLILLAGRLQGCRVIFLKQLKSGMLLVTGPYSVNRIPLRRVNQAYVIATSTSVDVSAVDVSKFDDAYFKRVKAKKNADVMETDEEAAKYAPTEERIADQKAVDQVLVPVIEKEPLMTSYLKNRFTLRRGMNPHVMSF 213          
BLAST of Gvermi885.t1 vs. uniprot
Match: R7QHE3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHE3_CHOCR)

HSP 1 Score: 251 bits (640), Expect = 2.710e-81
Identity = 125/199 (62.81%), Postives = 158/199 (79.40%), Query Frame = 0
Query:   16 TKPVLETVIKKIGGEKNGGERTVVVNKGAKWYPADDMKRPVPSRKHMHKPPKLRSSISPGTVLILLAGRLRGSRVIFLGQLPSGKLLVTGPYSVNRIPLRRVDQAYVIATSTALDVSAVDISKFDDAYFKRVKNKVKADVMETEE-EEPKYSPTEERIADQKVVDQVLMPIIEKEPMMSSYLKSRFSLKRGMFPHAMNF 213
            ++PV++T+ K IGGEKNGG R V+   G KWYPADD++ PVPSRKH+HKP KLR+ I+PGT+LILLAG  RGSRV+FL QL SG LLVTGPYSVNRIP++RV+QAYVIATST ++VS  D++KFDD YFKR K    + VME +E +  K +PT+E+IADQK +D VL+P IEK P +SSYLK +F+L +G +PH M F
Sbjct:   36 SEPVVQTITKPIGGEKNGGTREVIKKTGPKWYPADDVRAPVPSRKHVHKPTKLRAGITPGTILILLAGANRGSRVVFLKQLSSGLLLVTGPYSVNRIPIKRVEQAYVIATSTKIEVSGCDVAKFDDEYFKRDKGSKASVVMEVDEGDASKKTPTQEKIADQKAIDAVLVPAIEKVPQLSSYLKVKFTLSKGQYPHEMKF 234          
BLAST of Gvermi885.t1 vs. uniprot
Match: Q7XY83_GRIJA (Ribosome protein L6 n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XY83_GRIJA)

HSP 1 Score: 247 bits (631), Expect = 3.470e-80
Identity = 130/211 (61.61%), Postives = 160/211 (75.83%), Query Frame = 0
Query:    4 SRDARRRAKEAPTKPVLETVIKKIGGEKNGGERTVVVNKGAKWYPADDMKRPVPSRKHMHKPPKLRSSISPGTVLILLAGRLRGSRVIFLGQLPSGKLLVTGPYSVNRIPLRRVDQAYVIATSTALDVSAVDISKFDDAYFKRVKNKVKADVMETE---EEEPKYSPTEERIADQKVVDQVLMPIIEKEPMMSSYLKSRFSLKRGMFPHAM 211
            SR+AR RAK+      ++ + K IGG KNGG R V   KG KWYPADD K PVPSRK++HKP KLR SI  GT++ILLAG  RGSRV+ L QL SG+LLVTGPY+VNRIPL RVDQ YVIATST++DVS VD+ K D+AYF++ + K K DVME +   ++E K    E RIADQK +D VL+P+IEKEP++SSYLK +FSLK+G +PHAM
Sbjct:    4 SRNARTRAKQVVIPEPIKMIKKPIGGAKNGGYRLVPEKKGPKWYPADDKKTPVPSRKNVHKPTKLRPSIKSGTIVILLAGVFRGSRVVVLKQLDSGQLLVTGPYAVNRIPLTRVDQRYVIATSTSIDVSKVDVKKIDNAYFRKPQKKKKTDVMEVDTAKKDEQKTKAIEARIADQKAIDAVLLPVIEKEPLLSSYLKVKFSLKKGQYPHAM 214          
BLAST of Gvermi885.t1 vs. uniprot
Match: A0A7S3A2Q9_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A2Q9_9RHOD)

HSP 1 Score: 233 bits (593), Expect = 2.050e-74
Identity = 127/217 (58.53%), Postives = 158/217 (72.81%), Query Frame = 0
Query:    1 MGLSRDARRRAKEAPTKPVLETVIKKIGGEKNGGERTVVVNKGAKWYPADDMKRPVPSRKHMHKPPKLRSSISPGTVLILLAGRLRGSRVIFLGQLPSGKLLVTGPYSVNRIPLRRVDQAYVIATSTALDVSAVDISKFDDAYFKRVKNK----VKADVMETEEEEPKYSPTEERIADQKVVDQVLMPIIEKEPMMSSYLKSRFSLKRGMFPHAMNF 213
            + ++RD RR AKEA   PV   V K IGGEKNGG+R  +V   A +YPADD+K+P+PSRKH+HKP KLRSSI+PGT+LILLAG  RG RV+FL QL +G LLVTGPYSVN +PLR+VDQAYVIATST +DVS VD+SKFD  YFK+ K+K     + D M  E  E K    E ++ADQK VD  +M  ++KE M+ +YL +RFSL +G +PH M F
Sbjct:    2 VSMNRDRRRAAKEAAATPVKAAVEKPIGGEKNGGKR--LVQPKAAYYPADDVKKPLPSRKHIHKPTKLRSSITPGTILILLAGNHRGKRVVFLKQLDTGLLLVTGPYSVNGVPLRKVDQAYVIATSTKIDVSGVDVSKFDGKYFKKDKSKKSKKTEEDFMAVEGAEKKSEIPEGKVADQKTVDSAIMTELKKEEMLIAYLGARFSLTKGQYPHKMVF 216          
BLAST of Gvermi885.t1 vs. uniprot
Match: A0A1X6PCS6_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PCS6_PORUM)

HSP 1 Score: 217 bits (552), Expect = 2.810e-68
Identity = 114/204 (55.88%), Postives = 141/204 (69.12%), Query Frame = 0
Query:   10 RAKEAPTKPVLETVIKKIGGEKNGGERTVVVNKGAKWYPADDMKRPVPSRKHMHKPPKLRSSISPGTVLILLAGRLRGSRVIFLGQLPSGKLLVTGPYSVNRIPLRRVDQAYVIATSTALDVSAVDISKFDDAYFKRVKNKVKADVMETEEEEPKYSPTEERIADQKVVDQVLMPIIEKEPMMSSYLKSRFSLKRGMFPHAMNF 213
            R K    +    T+ KKIGG+KNGGERT+    G+KWY AD++K PV SRKH+HKP KLR+S+ PG VLILL+GR R  RV+ LG LPSG LLVTGPY++N +P+RRVD AYVIATST +DVS VD+SK+DDAYFKR K     DV    EE  K    E +IADQK VD  L+  I+K+ ++  YL S F+L  G  PH + F
Sbjct:    9 RVKRKAAQETTTTITKKIGGDKNGGERTITKTVGSKWYNADNVKTPVASRKHVHKPRKLRASLKPGAVLILLSGRHRAKRVVMLGSLPSGLLLVTGPYAINGVPMRRVDAAYVIATSTIVDVSGVDVSKYDDAYFKRTKKPSGVDV--DMEESAKRPVPEHKIADQKAVDAALIAEIKKDSLLKPYLSSLFTLTDGQAPHELKF 210          
BLAST of Gvermi885.t1 vs. uniprot
Match: A0A397IYP9_9GLOM (60S ribosomal protein L6 n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397IYP9_9GLOM)

HSP 1 Score: 195 bits (496), Expect = 2.270e-59
Identity = 113/212 (53.30%), Postives = 148/212 (69.81%), Query Frame = 0
Query:    8 RRRAKEAPTKPVLETV-IKKIGGEKNGGERTVVVNKGAKWYPADDMKRPVPSRKHMHKPPKLRSSISPGTVLILLAGRLRGSRVIFLGQLPSGKLLVTGPYSVNRIPLRRVDQAYVIATSTALDVS-AVDISKFDDAYFKRVKNKVKADVMETE---EEEPKYSPTEE-RIADQKVVDQVLMPIIEKEPMMSSYLKSRFSLKRGMFPHAMNF 213
            R++A+   T+  +ET   K IGGEKNG ER + + K  ++YPA+D+ RP  SRK ++KP KLR +I+PGT+LIL+AGR RG RV+FL QL SG LLVTGP+ +N +PLRRV+QAYVIATST +D+S A  + KFDDAYFK+ K   K  V E E   +E+ K  P  E R +DQK VD+ +  +I+K P +  YL SRFSL RG FPH + F
Sbjct:   31 RKKAQVPKTEAKVETTKTKPIGGEKNGKERLIPLEKAPRFYPAEDIPRPKKSRK-VNKPTKLRPTITPGTILILVAGRYRGKRVVFLKQLASGLLLVTGPFRINGVPLRRVNQAYVIATSTKVDISTACPLDKFDDAYFKKAKESKKRKVTEKEFFEDEQKKKKPLPETRASDQKEVDKNITAVIKKTPHLRDYLHSRFSLSRGQFPHNLEF 241          
BLAST of Gvermi885.t1 vs. uniprot
Match: A0A1Y1ZCC3_9FUNG (Ribosomal_L6e_N domain-containing protein n=2 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1ZCC3_9FUNG)

HSP 1 Score: 194 bits (493), Expect = 6.060e-59
Identity = 111/207 (53.62%), Postives = 146/207 (70.53%), Query Frame = 0
Query:   11 AKEAPTKPVLETVIKKIGGEKNGGERTVVVNKGAKWYPADDMKRPVPSRKHMHKPPKLRSSISPGTVLILLAGRLRGSRVIFLGQLPSGKLLVTGPYSVNRIPLRRVDQAYVIATSTALDVSAVDIS-KFDDAYFKRVKNKVKADVMETE---EEEPKYSPTEERIADQKVVDQVLMPIIEKEPMMSSYLKSRFSLKRGMFPHAMNF 213
            AK     P  +TV  ++ G+KNG ER V +NK ++WYPA+D+ +P  SRK   KP KLR++I+PGTVL+LLAGR RG RV+FL QL SG LLVTGPY VN +PLRRV+QAYV+ATST +D+S V +  KFDDAYFK+ K   KA   E E   E++PK   +E R ADQKVVD+ ++  + + P + SYL + F+L++G  PHAM F
Sbjct:   37 AKNDTAAPTTKTV--QVNGDKNGKERVVALNKASRWYPAEDIAQPKVSRKTA-KPTKLRATITPGTVLVLLAGRFRGKRVVFLKQLASGLLLVTGPYKVNGVPLRRVNQAYVLATSTKVDLSNVKVDEKFDDAYFKKEKTS-KAGKTEEEFFDEKQPKKVISESRSADQKVVDKEILAAVAQVPHLRSYLNASFTLRKGQAPHAMKF 239          
BLAST of Gvermi885.t1 vs. uniprot
Match: A0A1Y1Y1J0_9FUNG (60S ribosomal protein L6 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y1J0_9FUNG)

HSP 1 Score: 194 bits (492), Expect = 8.330e-59
Identity = 110/207 (53.14%), Postives = 145/207 (70.05%), Query Frame = 0
Query:   11 AKEAPTKPVLETVIKKIGGEKNGGERTVVVNKGAKWYPADDMKRPVPSRKHMHKPPKLRSSISPGTVLILLAGRLRGSRVIFLGQLPSGKLLVTGPYSVNRIPLRRVDQAYVIATSTALDVSAVDIS-KFDDAYFKRVKNKVKADVMETE---EEEPKYSPTEERIADQKVVDQVLMPIIEKEPMMSSYLKSRFSLKRGMFPHAMNF 213
            A++A   P     ++ + GEKNG ER V +NK ++WYPA+D+ +P  SRK   KP KLR+SI+PGTVL+LLAGR RG RV+FL QL SG LLVTGPY VN +PLRRV+QAYVIATST +D+S V +  KFDDAYFK+ K   KA   E E   E++PK + +E R ADQK VD+ ++  +   P + +YL + F+L++G  PHAM F
Sbjct:   35 AEKAAAAPATTKTVQ-VNGEKNGKERVVALNKASRWYPAEDVAQPKQSRKTA-KPTKLRTSITPGTVLVLLAGRFRGKRVVFLKQLASGLLLVTGPYKVNGVPLRRVNQAYVIATSTKVDLSNVKVDEKFDDAYFKKEKT-AKASKTEEEFFDEKQPKKTISESRSADQKSVDKEILAAVSGVPHLRAYLNASFTLRKGQAPHAMKF 238          
BLAST of Gvermi885.t1 vs. uniprot
Match: A0A1Y1Y938_9FUNG (Ribosomal_L6e_N domain-containing protein n=2 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y938_9FUNG)

HSP 1 Score: 191 bits (486), Expect = 6.720e-58
Identity = 109/207 (52.66%), Postives = 146/207 (70.53%), Query Frame = 0
Query:   11 AKEAPTKPVLETVIKKIGGEKNGGERTVVVNKGAKWYPADDMKRPVPSRKHMHKPPKLRSSISPGTVLILLAGRLRGSRVIFLGQLPSGKLLVTGPYSVNRIPLRRVDQAYVIATSTALDVSAVDI-SKFDDAYFKRVKNKVKADVMETE---EEEPKYSPTEERIADQKVVDQVLMPIIEKEPMMSSYLKSRFSLKRGMFPHAMNF 213
            A++A   P     +K + GEKNG ER V +NK ++WYPA+D+ +P  SRK + KP KLR++I+PGTVL+LLAGR RG RV+FL QL SG LLVTGPY VN +PLRRV+QAYV+ATST +D+S V++ +KFDDAYFK+ K   KA   E E   EE+ K    E R ADQK VD+ ++  + + P + SYL + F+L++G  PH+M F
Sbjct:   35 AEKAAAAPATTKTVK-VNGEKNGSERVVSLNKASRWYPAEDVAQPKASRK-VAKPTKLRATITPGTVLVLLAGRFRGKRVVFLKQLASGLLLVTGPYKVNGVPLRRVNQAYVLATSTKVDLSNVNVDAKFDDAYFKKEKA-AKAKGTEEEFFGEEQKKKVIPESRSADQKSVDKEILAAVSQVPHLRSYLNASFTLRKGQAPHSMKF 238          
BLAST of Gvermi885.t1 vs. uniprot
Match: A0A2B4S5U2_STYPI (60S ribosomal protein L6 n=2 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4S5U2_STYPI)

HSP 1 Score: 191 bits (484), Expect = 1.390e-57
Identity = 109/211 (51.66%), Postives = 148/211 (70.14%), Query Frame = 0
Query:    9 RRAKEAPTKPVLE---TVIKKIGGEKNGGERTVVVNKGAKWYPADDMKRPVPSRKHMHKPPKLRSSISPGTVLILLAGRLRGSRVIFLGQLPSGKLLVTGPYSVNRIPLRRVDQAYVIATSTALDVSAVDI-SKFDDAYFKRVKNKVKA--DVMETEEEEPKYSPTEERIADQKVVDQVLMPIIEKEPMMSSYLKSRFSLKRGMFPHAMNF 213
            +R K    K V+E   T +K++GG+KNG  R V V + +++YP +D++RP+ +R+   KP KLR+SI+PGT+LILLAGR RG RV+FL QL SG LLVTGPY VN +PLRRV+QAYVIATST +D+S   +  +  D +FKR   K K   D+ E  +EE K  P+EERI DQK VD+ ++P I KE  +  YLK+ FSL++G +PH+M F
Sbjct:   32 KRKKTGVKKEVVEEPKTRVKEVGGDKNGSTRVVPVKRESRYYPTEDVRRPLRNRRKA-KPTKLRTSITPGTILILLAGRHRGKRVVFLKQLASGLLLVTGPYKVNGVPLRRVNQAYVIATSTQIDLSNFKLPERLSDDFFKREPRKKKRTEDMFEDAQEERK--PSEERIEDQKTVDEQILPEISKEAHLKKYLKTLFSLRKGQYPHSMKF 239          
The following BLAST results are available for this feature:
BLAST of Gvermi885.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3INT1_9FLOR3.470e-11982.1660S ribosomal protein L6 n=1 Tax=Gracilariopsis ch... [more]
R7QHE3_CHOCR2.710e-8162.81Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
Q7XY83_GRIJA3.470e-8061.61Ribosome protein L6 n=1 Tax=Griffithsia japonica T... [more]
A0A7S3A2Q9_9RHOD2.050e-7458.53Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A1X6PCS6_PORUM2.810e-6855.88Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A397IYP9_9GLOM2.270e-5953.3060S ribosomal protein L6 n=1 Tax=Diversispora epig... [more]
A0A1Y1ZCC3_9FUNG6.060e-5953.62Ribosomal_L6e_N domain-containing protein n=2 Tax=... [more]
A0A1Y1Y1J0_9FUNG8.330e-5953.1460S ribosomal protein L6 n=1 Tax=Basidiobolus meri... [more]
A0A1Y1Y938_9FUNG6.720e-5852.66Ribosomal_L6e_N domain-containing protein n=2 Tax=... [more]
A0A2B4S5U2_STYPI1.390e-5751.6660S ribosomal protein L6 n=2 Tax=Pocilloporidae Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR00091560S ribosomal protein L6EPFAMPF01159Ribosomal_L6ecoord: 109..213
e-value: 4.0E-33
score: 114.3
IPR00091560S ribosomal protein L6EPANTHERPTHR1071560S RIBOSOMAL PROTEIN L6coord: 17..213
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 70..157
e-value: 1.9E-9
score: 39.4
NoneNo IPR availablePANTHERPTHR10715:SF060S RIBOSOMAL PROTEIN L6coord: 17..213
IPR041997Ribosomal Protein L6, KOW domainCDDcd13156KOW_RPL6coord: 64..213
e-value: 2.66992E-82
score: 239.757
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 70..146

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:897127..897939 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi885.t1Gvermi885.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_2952 897127..897939 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi885.t1 ID=Gvermi885.t1|Name=Gvermi885.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=214bp
MGLSRDARRRAKEAPTKPVLETVIKKIGGEKNGGERTVVVNKGAKWYPAD
DMKRPVPSRKHMHKPPKLRSSISPGTVLILLAGRLRGSRVIFLGQLPSGK
LLVTGPYSVNRIPLRRVDQAYVIATSTALDVSAVDISKFDDAYFKRVKNK
VKADVMETEEEEPKYSPTEERIADQKVVDQVLMPIIEKEPMMSSYLKSRF
SLKRGMFPHAMNF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR00091560S_ribosomal_L6E
IPR014722Rib_L2_dom2
IPR041997KOW_RPL6
IPR008991Translation_prot_SH3-like_sf