Gvermi885.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi885.t1
Unique NameGvermi885.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:897127..897939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6087.XP_002164071.1
Preferred nameRPL6
PFAMsRibosomal_L6e,Ribosomal_L6e_N
Max annot lvl33208|Metazoa
KEGG koko:K02934
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000027,GO:0000049,GO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006355,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009892,GO:0009987,GO:0010259,GO:0010467,GO:0010468,GO:0010556,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030016,GO:0030017,GO:0030867,GO:0031090,GO:0031323,GO:0031326,GO:0031672,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0035770,GO:0036464,GO:0042175,GO:0042254,GO:0042255,GO:0042273,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051641,GO:0051649,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:0099080,GO:0099081,GO:0099512,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903506,GO:1990904,GO:1990932,GO:2000112,GO:2001141
Evalue9.8e-61
EggNOG OGsCOG2163@1|root,KOG1694@2759|Eukaryota,39HUD@33154|Opisthokonta,3BGDM@33208|Metazoa
Description60s ribosomal protein
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi885Gvermi885Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 897127..897939 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi885.t1Gvermi885.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 897127..897939 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi885.t1.stop1Gvermi885.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 897127..897129 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi885.t1.CDS1Gvermi885.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 897127..897726 -
Gvermi885.t1.CDS2Gvermi885.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 897898..897939 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi885.t1.exon1Gvermi885.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 897127..897726 -
Gvermi885.t1.exon2Gvermi885.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 897898..897939 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi885.t1.intron1Gvermi885.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2952 897727..897897 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi885.t1.start1Gvermi885.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 897937..897939 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi885.t1 ID=Gvermi885.t1|Name=Gvermi885.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=214bp
MGLSRDARRRAKEAPTKPVLETVIKKIGGEKNGGERTVVVNKGAKWYPAD
DMKRPVPSRKHMHKPPKLRSSISPGTVLILLAGRLRGSRVIFLGQLPSGK
LLVTGPYSVNRIPLRRVDQAYVIATSTALDVSAVDISKFDDAYFKRVKNK
VKADVMETEEEEPKYSPTEERIADQKVVDQVLMPIIEKEPMMSSYLKSRF
SLKRGMFPHAMNF*
back to top

spliced messenger RNA

>Gvermi885.t1 ID=Gvermi885.t1|Name=Gvermi885.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=642bp|location=Sequence derived from alignment at ScGOVlb_2952:897127..897939- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACTGAGCAGGGATGCCAGAAGGCGTGCAAAGGAAGCGCCCACCAA
GCCGGTTTTGGAAACGGTCATCAAGAAGATTGGTGGCGAGAAGAACGGCG
GTGAGCGAACGGTTGTTGTCAACAAGGGCGCCAAATGGTACCCAGCCGAT
GACATGAAGAGGCCCGTGCCCAGCCGGAAGCACATGCACAAGCCGCCAAA
GTTGCGATCGTCCATTTCGCCTGGCACAGTGCTGATCTTGTTGGCCGGCC
GTCTTCGTGGGAGCCGCGTGATCTTCCTCGGACAGCTGCCCTCTGGCAAG
CTTCTCGTCACGGGCCCGTACTCTGTGAACCGAATCCCGCTTCGCCGCGT
CGATCAAGCTTATGTGATTGCTACCAGCACTGCGCTCGATGTGAGCGCCG
TGGACATTTCAAAGTTTGACGATGCGTATTTCAAGCGCGTGAAGAACAAG
GTGAAGGCGGATGTGATGGAGACGGAGGAGGAAGAGCCCAAGTATTCTCC
GACGGAGGAGAGGATCGCAGATCAGAAAGTGGTGGATCAAGTGCTCATGC
CCATCATTGAGAAGGAGCCTATGATGAGTAGCTACCTCAAGAGCAGGTTC
TCTTTGAAGAGGGGCATGTTCCCACACGCCATGAACTTTTAG
back to top

protein sequence of Gvermi885.t1

>Gvermi885.t1 ID=Gvermi885.t1|Name=Gvermi885.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=214bp
MGLSRDARRRAKEAPTKPVLETVIKKIGGEKNGGERTVVVNKGAKWYPAD
DMKRPVPSRKHMHKPPKLRSSISPGTVLILLAGRLRGSRVIFLGQLPSGK
LLVTGPYSVNRIPLRRVDQAYVIATSTALDVSAVDISKFDDAYFKRVKNK
VKADVMETEEEEPKYSPTEERIADQKVVDQVLMPIIEKEPMMSSYLKSRF
SLKRGMFPHAMNF*
back to top

mRNA from alignment at ScGOVlb_2952:897127..897939-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi885.t1 ID=Gvermi885.t1|Name=Gvermi885.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=813bp|location=Sequence derived from alignment at ScGOVlb_2952:897127..897939- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGACTGAGCAGGGATGCCAGAAGGCGTGCAAAGGAAGCGGTTCGTTA
GTGCAATTCGCGCGCGTACGCGCAAAACGGGCGCTTGCAACTCCCCGTTT
CTCGTTCGGCGTGATGTACATGACGCGGCGTGGATCCGGCCTGTGCGTGC
GCTCGACCGGTGCTAACACTCGTTTTTTATCGCGTTGCGTGTGTGTCTGT
GCGCGCACGGCAGCCCACCAAGCCGGTTTTGGAAACGGTCATCAAGAAGA
TTGGTGGCGAGAAGAACGGCGGTGAGCGAACGGTTGTTGTCAACAAGGGC
GCCAAATGGTACCCAGCCGATGACATGAAGAGGCCCGTGCCCAGCCGGAA
GCACATGCACAAGCCGCCAAAGTTGCGATCGTCCATTTCGCCTGGCACAG
TGCTGATCTTGTTGGCCGGCCGTCTTCGTGGGAGCCGCGTGATCTTCCTC
GGACAGCTGCCCTCTGGCAAGCTTCTCGTCACGGGCCCGTACTCTGTGAA
CCGAATCCCGCTTCGCCGCGTCGATCAAGCTTATGTGATTGCTACCAGCA
CTGCGCTCGATGTGAGCGCCGTGGACATTTCAAAGTTTGACGATGCGTAT
TTCAAGCGCGTGAAGAACAAGGTGAAGGCGGATGTGATGGAGACGGAGGA
GGAAGAGCCCAAGTATTCTCCGACGGAGGAGAGGATCGCAGATCAGAAAG
TGGTGGATCAAGTGCTCATGCCCATCATTGAGAAGGAGCCTATGATGAGT
AGCTACCTCAAGAGCAGGTTCTCTTTGAAGAGGGGCATGTTCCCACACGC
CATGAACTTTTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_2952:897127..897939-

>Gvermi885.t1 ID=Gvermi885.t1|Name=Gvermi885.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=642bp|location=Sequence derived from alignment at ScGOVlb_2952:897127..897939- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGACTGAGCAGGGATGCCAGAAGGCGTGCAAAGGAAGCGCCCACCAA
GCCGGTTTTGGAAACGGTCATCAAGAAGATTGGTGGCGAGAAGAACGGCG
GTGAGCGAACGGTTGTTGTCAACAAGGGCGCCAAATGGTACCCAGCCGAT
GACATGAAGAGGCCCGTGCCCAGCCGGAAGCACATGCACAAGCCGCCAAA
GTTGCGATCGTCCATTTCGCCTGGCACAGTGCTGATCTTGTTGGCCGGCC
GTCTTCGTGGGAGCCGCGTGATCTTCCTCGGACAGCTGCCCTCTGGCAAG
CTTCTCGTCACGGGCCCGTACTCTGTGAACCGAATCCCGCTTCGCCGCGT
CGATCAAGCTTATGTGATTGCTACCAGCACTGCGCTCGATGTGAGCGCCG
TGGACATTTCAAAGTTTGACGATGCGTATTTCAAGCGCGTGAAGAACAAG
GTGAAGGCGGATGTGATGGAGACGGAGGAGGAAGAGCCCAAGTATTCTCC
GACGGAGGAGAGGATCGCAGATCAGAAAGTGGTGGATCAAGTGCTCATGC
CCATCATTGAGAAGGAGCCTATGATGAGTAGCTACCTCAAGAGCAGGTTC
TCTTTGAAGAGGGGCATGTTCCCACACGCCATGAACTTTTAG
back to top