Gvermi801.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi801.t1
Unique NameGvermi801.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length528
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:402888..404471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi801Gvermi801Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 402888..404471 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi801.t1.start1Gvermi801.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 402888..402890 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi801.t1.CDS1Gvermi801.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 402888..404471 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi801.t1.exon1Gvermi801.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 402888..404471 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi801.t1.stop1Gvermi801.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 404469..404471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi801.t1Gvermi801.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 402888..404471 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi801.t1 ID=Gvermi801.t1|Name=Gvermi801.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=528bp
MSFPCDDDPFCTAADNDDLICMAADNDALKACSQNPSKSTYLKTYRIASS
LNLRKLCYVSAFVSPPVVFPISITLLLPHNRRGFALPSRMPSTTLYMPFE
VGNLLTWLWLEVFALGALILWTTDVAHIAMYARLKRSRAIRIRAKRSAVD
LLPMNGDLRVLPNAPKLCITLIRAVISILVAVSAMGIEQGVVYTRFEPTT
HTISATDANFSGRGYDATLRNSRQDFAVAACEDVNEISLVKFKSFVSPKR
FSCEASAHVGERIKEIEVIWDHNIVANISGGEVLPVNIVLGERSAMSKEL
SNDTFVLLEDSNGAPVHLNVVRRRMSKPIVGVCTGDRTDKQSGFQSGEYL
VFSNDIDNVGEIGDELVSVAYAICHKSSPVPLRSTDDMIVLPFNNAQQQM
ILARQVANSLISIVPDVTQRLHFERTTRVTLVKNKFNYLVLGLAIFNIVL
VVICKIGKNYIKQGVHVDPFSPFSMFWLGRHSAVGRSSHDSNATKEFFIH
GNNNKRYVEVFAVVSDISLETISIEKT*
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spliced messenger RNA

>Gvermi801.t1 ID=Gvermi801.t1|Name=Gvermi801.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1584bp|location=Sequence derived from alignment at ScGOVlb_2952:402888..404471+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTTCCCATGCGATGATGATCCCTTTTGCACGGCTGCAGACAATGA
TGATCTCATTTGCATGGCTGCCGACAATGATGCGTTGAAAGCTTGTTCTC
AAAACCCTTCGAAAAGCACATACCTTAAGACATATCGTATTGCTTCAAGC
CTCAACCTTCGGAAGCTGTGCTACGTTTCTGCATTTGTCAGTCCTCCCGT
CGTATTTCCCATCTCGATTACCTTGCTTCTGCCCCATAACAGACGTGGCT
TCGCCCTTCCAAGTAGGATGCCGTCAACAACGCTGTACATGCCGTTCGAA
GTGGGAAACCTTCTCACTTGGCTTTGGCTAGAGGTCTTTGCCTTGGGTGC
TCTCATTCTATGGACCACAGATGTGGCGCACATAGCAATGTACGCTCGAC
TCAAAAGGTCCCGTGCCATTCGCATTCGAGCAAAGCGCAGTGCAGTTGAT
CTACTTCCGATGAACGGAGATCTTCGTGTGTTACCCAACGCGCCCAAACT
GTGTATCACCCTAATTCGCGCCGTCATTTCTATTTTGGTGGCGGTTAGCG
CCATGGGAATAGAGCAAGGTGTTGTGTACACTCGGTTTGAACCAACAACA
CACACTATATCTGCAACGGATGCCAACTTTTCCGGGCGCGGTTACGACGC
CACACTTCGAAACTCGAGACAGGACTTTGCGGTGGCAGCGTGCGAAGACG
TGAACGAAATATCTTTGGTCAAATTCAAGAGCTTCGTATCTCCAAAGCGT
TTCAGTTGCGAAGCTTCCGCTCACGTTGGTGAGAGGATCAAGGAAATTGA
GGTCATTTGGGACCATAATATAGTGGCTAACATATCCGGCGGTGAAGTTT
TGCCTGTGAATATTGTCCTCGGTGAACGTTCTGCGATGTCAAAGGAGCTT
TCAAATGATACGTTTGTTCTGCTGGAGGATTCCAATGGGGCGCCTGTCCA
CCTGAACGTTGTTCGGAGACGAATGAGCAAGCCAATCGTAGGCGTTTGTA
CTGGAGACCGTACCGATAAGCAAAGCGGATTTCAAAGTGGGGAATATCTT
GTGTTTTCAAATGATATAGATAATGTTGGCGAGATTGGGGACGAGCTTGT
CAGTGTGGCGTACGCAATTTGCCACAAATCGTCACCAGTTCCTCTTCGAA
GCACAGATGATATGATTGTTCTTCCGTTCAACAACGCACAGCAGCAAATG
ATTCTTGCGCGGCAAGTGGCGAACAGCCTGATATCTATTGTACCAGACGT
GACACAACGATTACATTTTGAAAGAACTACTCGGGTGACACTGGTGAAGA
ATAAGTTTAATTATCTGGTTCTCGGATTGGCGATTTTCAACATAGTACTG
GTGGTTATATGCAAAATTGGGAAGAATTACATCAAGCAAGGAGTCCACGT
AGATCCGTTTTCTCCGTTTTCAATGTTTTGGCTCGGACGCCACTCTGCGG
TGGGAAGAAGCAGCCACGATAGTAATGCCACGAAAGAATTTTTTATACAC
GGCAACAACAATAAGAGGTACGTAGAGGTTTTTGCGGTTGTTTCTGACAT
TTCTCTTGAAACAATAAGCATCGAAAAAACATGA
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protein sequence of Gvermi801.t1

>Gvermi801.t1 ID=Gvermi801.t1|Name=Gvermi801.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=528bp
MSFPCDDDPFCTAADNDDLICMAADNDALKACSQNPSKSTYLKTYRIASS
LNLRKLCYVSAFVSPPVVFPISITLLLPHNRRGFALPSRMPSTTLYMPFE
VGNLLTWLWLEVFALGALILWTTDVAHIAMYARLKRSRAIRIRAKRSAVD
LLPMNGDLRVLPNAPKLCITLIRAVISILVAVSAMGIEQGVVYTRFEPTT
HTISATDANFSGRGYDATLRNSRQDFAVAACEDVNEISLVKFKSFVSPKR
FSCEASAHVGERIKEIEVIWDHNIVANISGGEVLPVNIVLGERSAMSKEL
SNDTFVLLEDSNGAPVHLNVVRRRMSKPIVGVCTGDRTDKQSGFQSGEYL
VFSNDIDNVGEIGDELVSVAYAICHKSSPVPLRSTDDMIVLPFNNAQQQM
ILARQVANSLISIVPDVTQRLHFERTTRVTLVKNKFNYLVLGLAIFNIVL
VVICKIGKNYIKQGVHVDPFSPFSMFWLGRHSAVGRSSHDSNATKEFFIH
GNNNKRYVEVFAVVSDISLETISIEKT*
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mRNA from alignment at ScGOVlb_2952:402888..404471+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi801.t1 ID=Gvermi801.t1|Name=Gvermi801.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1584bp|location=Sequence derived from alignment at ScGOVlb_2952:402888..404471+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCTTCCCATGCGATGATGATCCCTTTTGCACGGCTGCAGACAATGA
TGATCTCATTTGCATGGCTGCCGACAATGATGCGTTGAAAGCTTGTTCTC
AAAACCCTTCGAAAAGCACATACCTTAAGACATATCGTATTGCTTCAAGC
CTCAACCTTCGGAAGCTGTGCTACGTTTCTGCATTTGTCAGTCCTCCCGT
CGTATTTCCCATCTCGATTACCTTGCTTCTGCCCCATAACAGACGTGGCT
TCGCCCTTCCAAGTAGGATGCCGTCAACAACGCTGTACATGCCGTTCGAA
GTGGGAAACCTTCTCACTTGGCTTTGGCTAGAGGTCTTTGCCTTGGGTGC
TCTCATTCTATGGACCACAGATGTGGCGCACATAGCAATGTACGCTCGAC
TCAAAAGGTCCCGTGCCATTCGCATTCGAGCAAAGCGCAGTGCAGTTGAT
CTACTTCCGATGAACGGAGATCTTCGTGTGTTACCCAACGCGCCCAAACT
GTGTATCACCCTAATTCGCGCCGTCATTTCTATTTTGGTGGCGGTTAGCG
CCATGGGAATAGAGCAAGGTGTTGTGTACACTCGGTTTGAACCAACAACA
CACACTATATCTGCAACGGATGCCAACTTTTCCGGGCGCGGTTACGACGC
CACACTTCGAAACTCGAGACAGGACTTTGCGGTGGCAGCGTGCGAAGACG
TGAACGAAATATCTTTGGTCAAATTCAAGAGCTTCGTATCTCCAAAGCGT
TTCAGTTGCGAAGCTTCCGCTCACGTTGGTGAGAGGATCAAGGAAATTGA
GGTCATTTGGGACCATAATATAGTGGCTAACATATCCGGCGGTGAAGTTT
TGCCTGTGAATATTGTCCTCGGTGAACGTTCTGCGATGTCAAAGGAGCTT
TCAAATGATACGTTTGTTCTGCTGGAGGATTCCAATGGGGCGCCTGTCCA
CCTGAACGTTGTTCGGAGACGAATGAGCAAGCCAATCGTAGGCGTTTGTA
CTGGAGACCGTACCGATAAGCAAAGCGGATTTCAAAGTGGGGAATATCTT
GTGTTTTCAAATGATATAGATAATGTTGGCGAGATTGGGGACGAGCTTGT
CAGTGTGGCGTACGCAATTTGCCACAAATCGTCACCAGTTCCTCTTCGAA
GCACAGATGATATGATTGTTCTTCCGTTCAACAACGCACAGCAGCAAATG
ATTCTTGCGCGGCAAGTGGCGAACAGCCTGATATCTATTGTACCAGACGT
GACACAACGATTACATTTTGAAAGAACTACTCGGGTGACACTGGTGAAGA
ATAAGTTTAATTATCTGGTTCTCGGATTGGCGATTTTCAACATAGTACTG
GTGGTTATATGCAAAATTGGGAAGAATTACATCAAGCAAGGAGTCCACGT
AGATCCGTTTTCTCCGTTTTCAATGTTTTGGCTCGGACGCCACTCTGCGG
TGGGAAGAAGCAGCCACGATAGTAATGCCACGAAAGAATTTTTTATACAC
GGCAACAACAATAAGAGGTACGTAGAGGTTTTTGCGGTTGTTTCTGACAT
TTCTCTTGAAACAATAAGCATCGAAAAAACATGA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:402888..404471+

>Gvermi801.t1 ID=Gvermi801.t1|Name=Gvermi801.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1584bp|location=Sequence derived from alignment at ScGOVlb_2952:402888..404471+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCTTCCCATGCGATGATGATCCCTTTTGCACGGCTGCAGACAATGA
TGATCTCATTTGCATGGCTGCCGACAATGATGCGTTGAAAGCTTGTTCTC
AAAACCCTTCGAAAAGCACATACCTTAAGACATATCGTATTGCTTCAAGC
CTCAACCTTCGGAAGCTGTGCTACGTTTCTGCATTTGTCAGTCCTCCCGT
CGTATTTCCCATCTCGATTACCTTGCTTCTGCCCCATAACAGACGTGGCT
TCGCCCTTCCAAGTAGGATGCCGTCAACAACGCTGTACATGCCGTTCGAA
GTGGGAAACCTTCTCACTTGGCTTTGGCTAGAGGTCTTTGCCTTGGGTGC
TCTCATTCTATGGACCACAGATGTGGCGCACATAGCAATGTACGCTCGAC
TCAAAAGGTCCCGTGCCATTCGCATTCGAGCAAAGCGCAGTGCAGTTGAT
CTACTTCCGATGAACGGAGATCTTCGTGTGTTACCCAACGCGCCCAAACT
GTGTATCACCCTAATTCGCGCCGTCATTTCTATTTTGGTGGCGGTTAGCG
CCATGGGAATAGAGCAAGGTGTTGTGTACACTCGGTTTGAACCAACAACA
CACACTATATCTGCAACGGATGCCAACTTTTCCGGGCGCGGTTACGACGC
CACACTTCGAAACTCGAGACAGGACTTTGCGGTGGCAGCGTGCGAAGACG
TGAACGAAATATCTTTGGTCAAATTCAAGAGCTTCGTATCTCCAAAGCGT
TTCAGTTGCGAAGCTTCCGCTCACGTTGGTGAGAGGATCAAGGAAATTGA
GGTCATTTGGGACCATAATATAGTGGCTAACATATCCGGCGGTGAAGTTT
TGCCTGTGAATATTGTCCTCGGTGAACGTTCTGCGATGTCAAAGGAGCTT
TCAAATGATACGTTTGTTCTGCTGGAGGATTCCAATGGGGCGCCTGTCCA
CCTGAACGTTGTTCGGAGACGAATGAGCAAGCCAATCGTAGGCGTTTGTA
CTGGAGACCGTACCGATAAGCAAAGCGGATTTCAAAGTGGGGAATATCTT
GTGTTTTCAAATGATATAGATAATGTTGGCGAGATTGGGGACGAGCTTGT
CAGTGTGGCGTACGCAATTTGCCACAAATCGTCACCAGTTCCTCTTCGAA
GCACAGATGATATGATTGTTCTTCCGTTCAACAACGCACAGCAGCAAATG
ATTCTTGCGCGGCAAGTGGCGAACAGCCTGATATCTATTGTACCAGACGT
GACACAACGATTACATTTTGAAAGAACTACTCGGGTGACACTGGTGAAGA
ATAAGTTTAATTATCTGGTTCTCGGATTGGCGATTTTCAACATAGTACTG
GTGGTTATATGCAAAATTGGGAAGAATTACATCAAGCAAGGAGTCCACGT
AGATCCGTTTTCTCCGTTTTCAATGTTTTGGCTCGGACGCCACTCTGCGG
TGGGAAGAAGCAGCCACGATAGTAATGCCACGAAAGAATTTTTTATACAC
GGCAACAACAATAAGAGGTACGTAGAGGTTTTTGCGGTTGTTTCTGACAT
TTCTCTTGAAACAATAAGCATCGAAAAAACATGA
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