Gvermi779.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi779.t1
Unique Name	Gvermi779.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	609

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_2952	contig	ScGOVlb_2952:190349..192175 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3067.XP_002951402.1
PFAMs	PWWP,SET
Max annot lvl	3041\|Chlorophyta
Evalue	6.03e-61
EggNOG OGs	COG2940@1\|root,KOG1083@2759\|Eukaryota,388N2@33090\|Viridiplantae,34PB4@3041\|Chlorophyta
Description	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
COG category	B

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi779	Gvermi779	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_2952 190349..192175 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi779.t1.start1	Gvermi779.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_2952 190349..190351 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi779.t1.CDS1	Gvermi779.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_2952 190349..192175 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi779.t1.exon1	Gvermi779.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_2952 190349..192175 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi779.t1.stop1	Gvermi779.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_2952 192173..192175 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi779.t1	Gvermi779.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_2952 190349..192175 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_2952:190349..192175+
coding sequence from alignment at ScGOVlb_2952:190349..192175+

mRNA sequence

>Gvermi779.t1 ID=Gvermi779.t1|Name=Gvermi779.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=609bp
MGANNDLSTSALLKISPAASKLHIVWTKIKGHPYWPAQKIRMSPELESQH
RFQCAAKFRRRVDDTCVMYFGTCEVAYVNVSKSCISWQEGIQRNMHLSLK
GRADFQRALSEVKAFCHRVQRFPRGWWCEPKVMALYNQFYDQCLSSKLHV
LLREYIQRAEAELIFWAKGRRHPHWPVQVLPRNMAAERYPHLKLTPDSSS
MSSSMPCMFFGTGEVAMIQEKNFTPFGAGLARGYVTSNDRQDFIVALGEL
WGYLQEPRIWPSGYLSKRSWWNYEDMIAAPNPNDSSDFHVPHLPHYEHIK
KSVWCEGIEPPPKPRRSDMSCCDCEPDGEATCADAGCLNFASRFLCNPLT
CKAGPKCGNSSFHRRKLPKLRPFFTADQRGWGLKAEEPISKGSFVVEYIG
EIIDRDTLEKRLKEAQRLKSHEYYIMDLTNDLFVDAKHKGNLSRFINSSC
DPNCATQKWTDSASGQTHVGIFAKQDIPAGTELTYNYCFEDFGLLGKSQK
RSFMCQCGTSSCCMLDPEEKKQMKLLIGKRLEVRWDDGWYPGVVESYSLK
KKKFRVQYDDGDCEDLTLGLKTAVDDNVKFRLMEAPSDAESGKSTKSSKS
SKKAKDEE*

spliced messenger RNA

>Gvermi779.t1 ID=Gvermi779.t1|Name=Gvermi779.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1827bp|location=Sequence derived from alignment at ScGOVlb_2952:190349..192175+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGCCAATAACGACCTAAGCACCAGTGCGCTGCTCAAGATTTCGCC
GGCCGCCAGCAAGCTGCACATCGTATGGACAAAGATCAAGGGCCACCCGT
ACTGGCCCGCACAAAAGATTCGCATGTCCCCGGAACTTGAGAGCCAGCAT
CGCTTCCAATGCGCCGCCAAGTTCCGACGCAGAGTTGATGATACTTGCGT
CATGTACTTTGGCACTTGCGAAGTCGCCTACGTCAACGTCTCCAAGTCAT
GCATCTCATGGCAGGAAGGCATCCAACGCAACATGCATCTCTCACTCAAA
GGTCGAGCCGACTTCCAGAGAGCGCTCAGCGAAGTGAAGGCGTTCTGTCA
TCGAGTGCAACGCTTTCCACGCGGATGGTGGTGCGAGCCCAAGGTCATGG
CGCTTTACAATCAGTTCTACGACCAGTGCCTCTCGTCCAAGCTGCACGTG
CTCTTGCGGGAATACATTCAGCGAGCCGAGGCTGAGCTCATCTTTTGGGC
AAAAGGGCGTCGACACCCCCACTGGCCGGTACAAGTGTTGCCGCGAAATA
TGGCTGCGGAGCGATATCCGCATCTTAAGCTCACGCCCGATAGCAGTTCT
ATGTCCAGTTCCATGCCGTGCATGTTTTTCGGTACTGGAGAGGTGGCTAT
GATCCAAGAAAAGAATTTCACACCATTCGGAGCGGGTCTTGCTCGCGGTT
ACGTTACAAGCAACGATCGTCAGGATTTTATTGTTGCGCTCGGCGAATTG
TGGGGATATCTTCAAGAACCTCGGATTTGGCCTTCCGGATATCTCAGCAA
ACGCTCGTGGTGGAATTACGAGGACATGATAGCTGCTCCAAATCCAAACG
ATTCTAGCGATTTTCACGTGCCCCATCTTCCGCACTATGAACATATCAAA
AAGTCTGTGTGGTGTGAGGGGATTGAACCGCCGCCAAAACCGCGACGTTC
GGACATGTCGTGCTGTGATTGTGAGCCTGATGGGGAGGCTACTTGTGCGG
ATGCGGGCTGCCTCAATTTTGCATCCCGCTTCTTGTGCAATCCACTCACA
TGTAAGGCCGGACCCAAGTGTGGTAATTCAAGCTTTCATCGACGAAAGCT
GCCGAAACTGAGGCCCTTCTTCACAGCTGATCAGCGGGGATGGGGTCTAA
AGGCGGAGGAGCCTATCTCAAAAGGTTCGTTCGTCGTGGAGTACATTGGG
GAAATTATCGATCGCGATACGCTTGAGAAAAGACTCAAGGAGGCTCAAAG
GCTCAAGAGCCACGAGTACTACATCATGGATCTCACCAATGATCTGTTTG
TAGATGCAAAGCACAAGGGCAACCTATCTCGTTTTATCAACTCCAGTTGT
GATCCTAATTGCGCCACCCAGAAGTGGACGGACTCTGCCAGTGGTCAGAC
TCATGTCGGAATTTTCGCCAAGCAGGATATTCCTGCTGGCACGGAACTAA
CGTATAACTATTGCTTCGAAGACTTTGGGTTACTTGGAAAGAGTCAGAAG
CGCTCCTTTATGTGTCAATGCGGCACAAGTTCTTGCTGTATGCTAGACCC
AGAAGAGAAGAAACAAATGAAGCTGCTGATTGGGAAGAGACTAGAGGTTC
GATGGGATGACGGTTGGTATCCTGGAGTCGTAGAATCCTACAGTTTGAAG
AAGAAAAAGTTCCGAGTGCAGTATGATGATGGAGACTGTGAGGATCTTAC
GCTCGGATTGAAAACGGCTGTGGACGATAATGTCAAATTTAGGCTGATGG
AGGCTCCTTCGGATGCGGAGAGTGGCAAAAGTACTAAGAGCAGCAAGAGC
AGCAAGAAGGCGAAGGACGAAGAGTAA

protein sequence of Gvermi779.t1

>Gvermi779.t1 ID=Gvermi779.t1|Name=Gvermi779.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=609bp
MGANNDLSTSALLKISPAASKLHIVWTKIKGHPYWPAQKIRMSPELESQH
RFQCAAKFRRRVDDTCVMYFGTCEVAYVNVSKSCISWQEGIQRNMHLSLK
GRADFQRALSEVKAFCHRVQRFPRGWWCEPKVMALYNQFYDQCLSSKLHV
LLREYIQRAEAELIFWAKGRRHPHWPVQVLPRNMAAERYPHLKLTPDSSS
MSSSMPCMFFGTGEVAMIQEKNFTPFGAGLARGYVTSNDRQDFIVALGEL
WGYLQEPRIWPSGYLSKRSWWNYEDMIAAPNPNDSSDFHVPHLPHYEHIK
KSVWCEGIEPPPKPRRSDMSCCDCEPDGEATCADAGCLNFASRFLCNPLT
CKAGPKCGNSSFHRRKLPKLRPFFTADQRGWGLKAEEPISKGSFVVEYIG
EIIDRDTLEKRLKEAQRLKSHEYYIMDLTNDLFVDAKHKGNLSRFINSSC
DPNCATQKWTDSASGQTHVGIFAKQDIPAGTELTYNYCFEDFGLLGKSQK
RSFMCQCGTSSCCMLDPEEKKQMKLLIGKRLEVRWDDGWYPGVVESYSLK
KKKFRVQYDDGDCEDLTLGLKTAVDDNVKFRLMEAPSDAESGKSTKSSKS
SKKAKDEE*

mRNA from alignment at ScGOVlb_2952:190349..192175+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi779.t1 ID=Gvermi779.t1|Name=Gvermi779.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1827bp|location=Sequence derived from alignment at ScGOVlb_2952:190349..192175+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTGCCAATAACGACCTAAGCACCAGTGCGCTGCTCAAGATTTCGCC
GGCCGCCAGCAAGCTGCACATCGTATGGACAAAGATCAAGGGCCACCCGT
ACTGGCCCGCACAAAAGATTCGCATGTCCCCGGAACTTGAGAGCCAGCAT
CGCTTCCAATGCGCCGCCAAGTTCCGACGCAGAGTTGATGATACTTGCGT
CATGTACTTTGGCACTTGCGAAGTCGCCTACGTCAACGTCTCCAAGTCAT
GCATCTCATGGCAGGAAGGCATCCAACGCAACATGCATCTCTCACTCAAA
GGTCGAGCCGACTTCCAGAGAGCGCTCAGCGAAGTGAAGGCGTTCTGTCA
TCGAGTGCAACGCTTTCCACGCGGATGGTGGTGCGAGCCCAAGGTCATGG
CGCTTTACAATCAGTTCTACGACCAGTGCCTCTCGTCCAAGCTGCACGTG
CTCTTGCGGGAATACATTCAGCGAGCCGAGGCTGAGCTCATCTTTTGGGC
AAAAGGGCGTCGACACCCCCACTGGCCGGTACAAGTGTTGCCGCGAAATA
TGGCTGCGGAGCGATATCCGCATCTTAAGCTCACGCCCGATAGCAGTTCT
ATGTCCAGTTCCATGCCGTGCATGTTTTTCGGTACTGGAGAGGTGGCTAT
GATCCAAGAAAAGAATTTCACACCATTCGGAGCGGGTCTTGCTCGCGGTT
ACGTTACAAGCAACGATCGTCAGGATTTTATTGTTGCGCTCGGCGAATTG
TGGGGATATCTTCAAGAACCTCGGATTTGGCCTTCCGGATATCTCAGCAA
ACGCTCGTGGTGGAATTACGAGGACATGATAGCTGCTCCAAATCCAAACG
ATTCTAGCGATTTTCACGTGCCCCATCTTCCGCACTATGAACATATCAAA
AAGTCTGTGTGGTGTGAGGGGATTGAACCGCCGCCAAAACCGCGACGTTC
GGACATGTCGTGCTGTGATTGTGAGCCTGATGGGGAGGCTACTTGTGCGG
ATGCGGGCTGCCTCAATTTTGCATCCCGCTTCTTGTGCAATCCACTCACA
TGTAAGGCCGGACCCAAGTGTGGTAATTCAAGCTTTCATCGACGAAAGCT
GCCGAAACTGAGGCCCTTCTTCACAGCTGATCAGCGGGGATGGGGTCTAA
AGGCGGAGGAGCCTATCTCAAAAGGTTCGTTCGTCGTGGAGTACATTGGG
GAAATTATCGATCGCGATACGCTTGAGAAAAGACTCAAGGAGGCTCAAAG
GCTCAAGAGCCACGAGTACTACATCATGGATCTCACCAATGATCTGTTTG
TAGATGCAAAGCACAAGGGCAACCTATCTCGTTTTATCAACTCCAGTTGT
GATCCTAATTGCGCCACCCAGAAGTGGACGGACTCTGCCAGTGGTCAGAC
TCATGTCGGAATTTTCGCCAAGCAGGATATTCCTGCTGGCACGGAACTAA
CGTATAACTATTGCTTCGAAGACTTTGGGTTACTTGGAAAGAGTCAGAAG
CGCTCCTTTATGTGTCAATGCGGCACAAGTTCTTGCTGTATGCTAGACCC
AGAAGAGAAGAAACAAATGAAGCTGCTGATTGGGAAGAGACTAGAGGTTC
GATGGGATGACGGTTGGTATCCTGGAGTCGTAGAATCCTACAGTTTGAAG
AAGAAAAAGTTCCGAGTGCAGTATGATGATGGAGACTGTGAGGATCTTAC
GCTCGGATTGAAAACGGCTGTGGACGATAATGTCAAATTTAGGCTGATGG
AGGCTCCTTCGGATGCGGAGAGTGGCAAAAGTACTAAGAGCAGCAAGAGC
AGCAAGAAGGCGAAGGACGAAGAGTAA

Coding sequence (CDS) from alignment at ScGOVlb_2952:190349..192175+

>Gvermi779.t1 ID=Gvermi779.t1|Name=Gvermi779.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1827bp|location=Sequence derived from alignment at ScGOVlb_2952:190349..192175+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTGCCAATAACGACCTAAGCACCAGTGCGCTGCTCAAGATTTCGCC
GGCCGCCAGCAAGCTGCACATCGTATGGACAAAGATCAAGGGCCACCCGT
ACTGGCCCGCACAAAAGATTCGCATGTCCCCGGAACTTGAGAGCCAGCAT
CGCTTCCAATGCGCCGCCAAGTTCCGACGCAGAGTTGATGATACTTGCGT
CATGTACTTTGGCACTTGCGAAGTCGCCTACGTCAACGTCTCCAAGTCAT
GCATCTCATGGCAGGAAGGCATCCAACGCAACATGCATCTCTCACTCAAA
GGTCGAGCCGACTTCCAGAGAGCGCTCAGCGAAGTGAAGGCGTTCTGTCA
TCGAGTGCAACGCTTTCCACGCGGATGGTGGTGCGAGCCCAAGGTCATGG
CGCTTTACAATCAGTTCTACGACCAGTGCCTCTCGTCCAAGCTGCACGTG
CTCTTGCGGGAATACATTCAGCGAGCCGAGGCTGAGCTCATCTTTTGGGC
AAAAGGGCGTCGACACCCCCACTGGCCGGTACAAGTGTTGCCGCGAAATA
TGGCTGCGGAGCGATATCCGCATCTTAAGCTCACGCCCGATAGCAGTTCT
ATGTCCAGTTCCATGCCGTGCATGTTTTTCGGTACTGGAGAGGTGGCTAT
GATCCAAGAAAAGAATTTCACACCATTCGGAGCGGGTCTTGCTCGCGGTT
ACGTTACAAGCAACGATCGTCAGGATTTTATTGTTGCGCTCGGCGAATTG
TGGGGATATCTTCAAGAACCTCGGATTTGGCCTTCCGGATATCTCAGCAA
ACGCTCGTGGTGGAATTACGAGGACATGATAGCTGCTCCAAATCCAAACG
ATTCTAGCGATTTTCACGTGCCCCATCTTCCGCACTATGAACATATCAAA
AAGTCTGTGTGGTGTGAGGGGATTGAACCGCCGCCAAAACCGCGACGTTC
GGACATGTCGTGCTGTGATTGTGAGCCTGATGGGGAGGCTACTTGTGCGG
ATGCGGGCTGCCTCAATTTTGCATCCCGCTTCTTGTGCAATCCACTCACA
TGTAAGGCCGGACCCAAGTGTGGTAATTCAAGCTTTCATCGACGAAAGCT
GCCGAAACTGAGGCCCTTCTTCACAGCTGATCAGCGGGGATGGGGTCTAA
AGGCGGAGGAGCCTATCTCAAAAGGTTCGTTCGTCGTGGAGTACATTGGG
GAAATTATCGATCGCGATACGCTTGAGAAAAGACTCAAGGAGGCTCAAAG
GCTCAAGAGCCACGAGTACTACATCATGGATCTCACCAATGATCTGTTTG
TAGATGCAAAGCACAAGGGCAACCTATCTCGTTTTATCAACTCCAGTTGT
GATCCTAATTGCGCCACCCAGAAGTGGACGGACTCTGCCAGTGGTCAGAC
TCATGTCGGAATTTTCGCCAAGCAGGATATTCCTGCTGGCACGGAACTAA
CGTATAACTATTGCTTCGAAGACTTTGGGTTACTTGGAAAGAGTCAGAAG
CGCTCCTTTATGTGTCAATGCGGCACAAGTTCTTGCTGTATGCTAGACCC
AGAAGAGAAGAAACAAATGAAGCTGCTGATTGGGAAGAGACTAGAGGTTC
GATGGGATGACGGTTGGTATCCTGGAGTCGTAGAATCCTACAGTTTGAAG
AAGAAAAAGTTCCGAGTGCAGTATGATGATGGAGACTGTGAGGATCTTAC
GCTCGGATTGAAAACGGCTGTGGACGATAATGTCAAATTTAGGCTGATGG
AGGCTCCTTCGGATGCGGAGAGTGGCAAAAGTACTAAGAGCAGCAAGAGC
AGCAAGAAGGCGAAGGACGAAGAGTAA