Gvermi793.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi793.t1
Unique NameGvermi793.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length391
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:295088..296326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7955.ENSDARP00000094034
Preferred nameALG2
PFAMsGlyco_transf_4,Glycos_transf_1
Max annot lvl33208|Metazoa
KEGG koko:K03843
KEGG ReactionR05973,R06238
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
KEGG ModuleM00055
GOsGO:0000030,GO:0000033,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005856,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010035,GO:0010038,GO:0012505,GO:0015629,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0031984,GO:0033577,GO:0034645,GO:0036211,GO:0042175,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046982,GO:0046983,GO:0047485,GO:0048306,GO:0048471,GO:0050896,GO:0051592,GO:0070085,GO:0071704,GO:0097502,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue2.2e-96
EggNOG OGsCOG0438@1|root,KOG0853@2759|Eukaryota,38TSM@33154|Opisthokonta,3BCV6@33208|Metazoa,3CUT2@33213|Bilateria,489EW@7711|Chordata,495SZ@7742|Vertebrata,49SHQ@7898|Actinopterygii
EC2.4.1.132,2.4.1.257
DescriptionAsparagine-linked glycosylation 2 homolog (S. cerevisiae, alpha-1,3-mannosyltransferase)
COG categoryM
CAZyGT4
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi793Gvermi793Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 295088..296326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi793.t1Gvermi793.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 295088..296326 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi793.t1.start1Gvermi793.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 295088..295090 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi793.t1.CDS1Gvermi793.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 295088..295309 +
Gvermi793.t1.CDS2Gvermi793.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 295376..296326 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi793.t1.exon1Gvermi793.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 295088..295309 +
Gvermi793.t1.exon2Gvermi793.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 295376..296326 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi793.t1.intron1Gvermi793.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2952 295310..295375 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi793.t1.stop1Gvermi793.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 296324..296326 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi793.t1 ID=Gvermi793.t1|Name=Gvermi793.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=391bp
MRVVFVHPDLGIGGAERFIVDAALSLQNHGHQTIIVTPYFDPTRCFKEVA
LPSPCVQVMHVRPFIPRSIFRRFQAILASLRCAIVTLYICFFYRFDVAVV
DIVSLPLLIFYLFRVKTLFYCHYPDKLLAQTLNPNSQPSVFKRLYRTVVD
SIEAFSLRHATRIACNSHFTTQAFIQTFPNLPKPIVIYPCVKLSDTINSS
PSNILLSLNRYERKKNISLAIETLAYLRSEQNADVQLVVAGGYDSRLVEN
VECYTQLERLVSAHGLGDRVRMLKNVSDGERRSLLRNALAVLYTPANEHF
GIVPLEAMSEAVPVIAVNSGGPLETVDHLQSGFLCESSADQFGKATMELL
NDRQKRSQMGENGRQRVQQYFSNDVLGRVLDQFLRNLSST*
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spliced messenger RNA

>Gvermi793.t1 ID=Gvermi793.t1|Name=Gvermi793.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1173bp|location=Sequence derived from alignment at ScGOVlb_2952:295088..296326+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGTTGTGTTCGTCCATCCTGACTTAGGAATCGGTGGTGCTGAACG
TTTCATCGTCGATGCCGCTCTTTCATTACAGAATCACGGCCACCAGACAA
TTATCGTCACCCCCTATTTTGATCCCACTCGATGTTTCAAAGAGGTCGCA
TTACCGTCGCCCTGCGTCCAAGTGATGCATGTTCGTCCCTTCATTCCACG
CTCTATCTTTCGTCGATTTCAAGCTATTCTTGCGTCGCTGCGATGTGCCA
TAGTCACTCTTTATATCTGCTTCTTCTACCGCTTTGACGTTGCGGTTGTT
GATATAGTATCTTTACCCCTTTTGATTTTTTACTTATTTCGCGTCAAGAC
TCTTTTCTATTGCCATTACCCAGACAAACTTCTAGCCCAGACTCTGAACC
CCAACTCACAACCATCTGTTTTCAAACGCCTATATCGAACCGTCGTCGAT
TCAATCGAAGCATTTTCTCTTCGGCATGCCACCCGAATCGCGTGTAACTC
GCATTTTACTACTCAAGCCTTCATTCAAACGTTTCCCAACTTGCCGAAAC
CGATCGTCATCTATCCATGTGTGAAATTGTCTGATACTATCAACTCATCT
CCTTCAAACATCTTACTGTCCCTTAATCGGTATGAACGAAAGAAGAACAT
TTCTCTCGCGATTGAGACTCTTGCGTATCTGAGGTCGGAGCAAAATGCTG
ATGTACAGCTCGTTGTTGCCGGCGGATATGATTCTAGACTTGTCGAGAAC
GTGGAATGTTACACTCAACTCGAGCGATTGGTGAGTGCCCATGGTCTCGG
AGATCGCGTGCGCATGCTCAAAAATGTGTCTGATGGGGAGAGGCGTTCTC
TCCTGCGGAATGCTCTTGCGGTACTCTACACACCTGCCAACGAGCATTTC
GGAATTGTTCCGCTCGAGGCTATGAGTGAAGCGGTGCCAGTCATAGCCGT
CAATTCAGGAGGCCCTTTAGAAACCGTTGATCATCTTCAAAGTGGTTTTC
TCTGTGAAAGTTCTGCCGATCAGTTTGGCAAAGCTACCATGGAGTTGTTG
AACGATCGTCAGAAAAGAAGTCAGATGGGTGAAAACGGTCGGCAAAGGGT
ACAGCAATACTTCTCTAATGACGTCTTGGGTAGAGTACTAGATCAGTTTC
TCAGGAATCTCTCCAGCACATAG
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protein sequence of Gvermi793.t1

>Gvermi793.t1 ID=Gvermi793.t1|Name=Gvermi793.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=391bp
MRVVFVHPDLGIGGAERFIVDAALSLQNHGHQTIIVTPYFDPTRCFKEVA
LPSPCVQVMHVRPFIPRSIFRRFQAILASLRCAIVTLYICFFYRFDVAVV
DIVSLPLLIFYLFRVKTLFYCHYPDKLLAQTLNPNSQPSVFKRLYRTVVD
SIEAFSLRHATRIACNSHFTTQAFIQTFPNLPKPIVIYPCVKLSDTINSS
PSNILLSLNRYERKKNISLAIETLAYLRSEQNADVQLVVAGGYDSRLVEN
VECYTQLERLVSAHGLGDRVRMLKNVSDGERRSLLRNALAVLYTPANEHF
GIVPLEAMSEAVPVIAVNSGGPLETVDHLQSGFLCESSADQFGKATMELL
NDRQKRSQMGENGRQRVQQYFSNDVLGRVLDQFLRNLSST*
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mRNA from alignment at ScGOVlb_2952:295088..296326+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi793.t1 ID=Gvermi793.t1|Name=Gvermi793.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1239bp|location=Sequence derived from alignment at ScGOVlb_2952:295088..296326+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGTTGTGTTCGTCCATCCTGACTTAGGAATCGGTGGTGCTGAACG
TTTCATCGTCGATGCCGCTCTTTCATTACAGAATCACGGCCACCAGACAA
TTATCGTCACCCCCTATTTTGATCCCACTCGATGTTTCAAAGAGGTCGCA
TTACCGTCGCCCTGCGTCCAAGTGATGCATGTTCGTCCCTTCATTCCACG
CTCTATCTTTCGTCGATTTCAAGTACGTCAATGAACGATGTATCCCAACG
GCTGTTTTTTCATACATCACTAACAGGCACTTTCAAAGGCTATTCTTGCG
TCGCTGCGATGTGCCATAGTCACTCTTTATATCTGCTTCTTCTACCGCTT
TGACGTTGCGGTTGTTGATATAGTATCTTTACCCCTTTTGATTTTTTACT
TATTTCGCGTCAAGACTCTTTTCTATTGCCATTACCCAGACAAACTTCTA
GCCCAGACTCTGAACCCCAACTCACAACCATCTGTTTTCAAACGCCTATA
TCGAACCGTCGTCGATTCAATCGAAGCATTTTCTCTTCGGCATGCCACCC
GAATCGCGTGTAACTCGCATTTTACTACTCAAGCCTTCATTCAAACGTTT
CCCAACTTGCCGAAACCGATCGTCATCTATCCATGTGTGAAATTGTCTGA
TACTATCAACTCATCTCCTTCAAACATCTTACTGTCCCTTAATCGGTATG
AACGAAAGAAGAACATTTCTCTCGCGATTGAGACTCTTGCGTATCTGAGG
TCGGAGCAAAATGCTGATGTACAGCTCGTTGTTGCCGGCGGATATGATTC
TAGACTTGTCGAGAACGTGGAATGTTACACTCAACTCGAGCGATTGGTGA
GTGCCCATGGTCTCGGAGATCGCGTGCGCATGCTCAAAAATGTGTCTGAT
GGGGAGAGGCGTTCTCTCCTGCGGAATGCTCTTGCGGTACTCTACACACC
TGCCAACGAGCATTTCGGAATTGTTCCGCTCGAGGCTATGAGTGAAGCGG
TGCCAGTCATAGCCGTCAATTCAGGAGGCCCTTTAGAAACCGTTGATCAT
CTTCAAAGTGGTTTTCTCTGTGAAAGTTCTGCCGATCAGTTTGGCAAAGC
TACCATGGAGTTGTTGAACGATCGTCAGAAAAGAAGTCAGATGGGTGAAA
ACGGTCGGCAAAGGGTACAGCAATACTTCTCTAATGACGTCTTGGGTAGA
GTACTAGATCAGTTTCTCAGGAATCTCTCCAGCACATAG
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Coding sequence (CDS) from alignment at ScGOVlb_2952:295088..296326+

>Gvermi793.t1 ID=Gvermi793.t1|Name=Gvermi793.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1173bp|location=Sequence derived from alignment at ScGOVlb_2952:295088..296326+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGTTGTGTTCGTCCATCCTGACTTAGGAATCGGTGGTGCTGAACG
TTTCATCGTCGATGCCGCTCTTTCATTACAGAATCACGGCCACCAGACAA
TTATCGTCACCCCCTATTTTGATCCCACTCGATGTTTCAAAGAGGTCGCA
TTACCGTCGCCCTGCGTCCAAGTGATGCATGTTCGTCCCTTCATTCCACG
CTCTATCTTTCGTCGATTTCAAGCTATTCTTGCGTCGCTGCGATGTGCCA
TAGTCACTCTTTATATCTGCTTCTTCTACCGCTTTGACGTTGCGGTTGTT
GATATAGTATCTTTACCCCTTTTGATTTTTTACTTATTTCGCGTCAAGAC
TCTTTTCTATTGCCATTACCCAGACAAACTTCTAGCCCAGACTCTGAACC
CCAACTCACAACCATCTGTTTTCAAACGCCTATATCGAACCGTCGTCGAT
TCAATCGAAGCATTTTCTCTTCGGCATGCCACCCGAATCGCGTGTAACTC
GCATTTTACTACTCAAGCCTTCATTCAAACGTTTCCCAACTTGCCGAAAC
CGATCGTCATCTATCCATGTGTGAAATTGTCTGATACTATCAACTCATCT
CCTTCAAACATCTTACTGTCCCTTAATCGGTATGAACGAAAGAAGAACAT
TTCTCTCGCGATTGAGACTCTTGCGTATCTGAGGTCGGAGCAAAATGCTG
ATGTACAGCTCGTTGTTGCCGGCGGATATGATTCTAGACTTGTCGAGAAC
GTGGAATGTTACACTCAACTCGAGCGATTGGTGAGTGCCCATGGTCTCGG
AGATCGCGTGCGCATGCTCAAAAATGTGTCTGATGGGGAGAGGCGTTCTC
TCCTGCGGAATGCTCTTGCGGTACTCTACACACCTGCCAACGAGCATTTC
GGAATTGTTCCGCTCGAGGCTATGAGTGAAGCGGTGCCAGTCATAGCCGT
CAATTCAGGAGGCCCTTTAGAAACCGTTGATCATCTTCAAAGTGGTTTTC
TCTGTGAAAGTTCTGCCGATCAGTTTGGCAAAGCTACCATGGAGTTGTTG
AACGATCGTCAGAAAAGAAGTCAGATGGGTGAAAACGGTCGGCAAAGGGT
ACAGCAATACTTCTCTAATGACGTCTTGGGTAGAGTACTAGATCAGTTTC
TCAGGAATCTCTCCAGCACATAG
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