Gvermi874.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi874.t1
Unique NameGvermi874.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length322
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:761862..762827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMS430CT
Preferred namePPP2R2C
PFAMsWD40
Max annot lvl2759|Eukaryota
KEGG koko:K04354
KEGG Pathwayko03015,ko04071,ko04111,ko04151,ko04152,ko04261,ko04390,ko04391,ko04530,ko04728,ko05142,ko05160,ko05165,map03015,map04071,map04111,map04151,map04152,map04261,map04390,map04391,map04530,map04728,map05142,map05160,map05165
GOsGO:0000003,GO:0000075,GO:0000086,GO:0000159,GO:0000184,GO:0000226,GO:0000266,GO:0000278,GO:0000280,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000910,GO:0000956,GO:0001100,GO:0001700,GO:0002119,GO:0002164,GO:0003002,GO:0003006,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005773,GO:0005774,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005933,GO:0005934,GO:0005935,GO:0005937,GO:0006139,GO:0006355,GO:0006401,GO:0006402,GO:0006464,GO:0006470,GO:0006605,GO:0006626,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006915,GO:0006996,GO:0007005,GO:0007010,GO:0007017,GO:0007049,GO:0007059,GO:0007088,GO:0007091,GO:0007093,GO:0007096,GO:0007098,GO:0007099,GO:0007127,GO:0007163,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007346,GO:0007389,GO:0007399,GO:0007405,GO:0007406,GO:0007417,GO:0007420,GO:0007423,GO:0007444,GO:0007447,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008195,GO:0008219,GO:0008283,GO:0008285,GO:0008287,GO:0008356,GO:0008637,GO:0009056,GO:0009057,GO:0009410,GO:0009790,GO:0009791,GO:0009792,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010389,GO:0010458,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0010646,GO:0010647,GO:0010648,GO:0010721,GO:0010921,GO:0010941,GO:0010942,GO:0010948,GO:0010965,GO:0010971,GO:0010972,GO:0010974,GO:0012501,GO:0014070,GO:0014072,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017145,GO:0019208,GO:0019219,GO:0019220,GO:0019222,GO:0019439,GO:0019538,GO:0019867,GO:0019888,GO:0019899,GO:0019902,GO:0019903,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023056,GO:0023057,GO:0030011,GO:0030029,GO:0030036,GO:0030071,GO:0030111,GO:0030154,GO:0030177,GO:0030182,GO:0030234,GO:0030427,GO:0031023,GO:0031029,GO:0031030,GO:0031033,GO:0031034,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031647,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031991,GO:0032268,GO:0032270,GO:0032465,GO:0032466,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032879,GO:0032880,GO:0032954,GO:0032955,GO:0032956,GO:0032970,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033365,GO:0034260,GO:0034613,GO:0034622,GO:0034641,GO:0034655,GO:0035295,GO:0035303,GO:0035304,GO:0035306,GO:0035307,GO:0036211,GO:0036445,GO:0040026,GO:0040028,GO:0042127,GO:0042221,GO:0042493,GO:0042578,GO:0042886,GO:0042981,GO:0042995,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043087,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043278,GO:0043279,GO:0043332,GO:0043412,GO:0043523,GO:0043525,GO:0043653,GO:0043666,GO:0043933,GO:0044085,GO:0044087,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044430,GO:0044437,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044784,GO:0044818,GO:0044839,GO:0044877,GO:0045132,GO:0045143,GO:0045165,GO:0045184,GO:0045196,GO:0045201,GO:0045595,GO:0045596,GO:0045786,GO:0045787,GO:0045839,GO:0045893,GO:0045930,GO:0045931,GO:0045935,GO:0045937,GO:0046483,GO:0046578,GO:0046580,GO:0046700,GO:0046907,GO:0048103,GO:0048156,GO:0048232,GO:0048285,GO:0048468,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048585,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050821,GO:0050896,GO:0051056,GO:0051058,GO:0051093,GO:0051094,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051286,GO:0051298,GO:0051301,GO:0051302,GO:0051321,GO:0051336,GO:0051346,GO:0051493,GO:0051641,GO:0051649,GO:0051704,GO:0051721,GO:0051726,GO:0051782,GO:0051783,GO:0051784,GO:0051960,GO:0051961,GO:0051983,GO:0055057,GO:0055059,GO:0060255,GO:0060284,GO:0060322,GO:0060341,GO:0060359,GO:0060429,GO:0060828,GO:0061062,GO:0061063,GO:0061351,GO:0061586,GO:0061982,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070262,GO:0070585,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072089,GO:0072091,GO:0072347,GO:0072594,GO:0072655,GO:0072686,GO:0080090,GO:0090068,GO:0090231,GO:0090263,GO:0090266,GO:0090304,GO:0098534,GO:0098588,GO:0098722,GO:0098772,GO:0098805,GO:0098813,GO:0098852,GO:0110020,GO:0120025,GO:0120038,GO:0140013,GO:0140014,GO:0140096,GO:1900180,GO:1900182,GO:1901214,GO:1901216,GO:1901360,GO:1901361,GO:1901564,GO:1901575,GO:1901698,GO:1901891,GO:1901892,GO:1901976,GO:1901987,GO:1901988,GO:1901989,GO:1901990,GO:1901991,GO:1901992,GO:1902099,GO:1902412,GO:1902413,GO:1902494,GO:1902531,GO:1902532,GO:1902680,GO:1902692,GO:1902749,GO:1902750,GO:1902751,GO:1903046,GO:1903047,GO:1903293,GO:1903436,GO:1903437,GO:1903504,GO:1903506,GO:1903508,GO:1903827,GO:1903829,GO:1905818,GO:2000026,GO:2000112,GO:2000177,GO:2000178,GO:2000647,GO:2001141
Evalue8.25e-93
EggNOG OGsCOG5170@1|root,KOG1354@2759|Eukaryota
Descriptionpeptidyl-serine dephosphorylation
COG categoryT
BRITEko00000,ko00001,ko01009,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi874Gvermi874Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 761862..762827 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi874.t1.start1Gvermi874.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 761862..761864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi874.t1.CDS1Gvermi874.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 761862..762827 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi874.t1.exon1Gvermi874.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 761862..762827 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi874.t1.stop1Gvermi874.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 762825..762827 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi874.t1Gvermi874.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 761862..762827 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi874.t1 ID=Gvermi874.t1|Name=Gvermi874.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=322bp
MRAMQAECMAKFVTDPATLTMPRLQHQGRFITAIPRRSFSSHNSYHINSI
SLNSDEQTFLSADDLRVNVWNLERQAQGFNVLDVKPSNVEDLTEVVTCAV
FHPRQCQLFAHSTSRGVVRLCDLRSSALCDCAYAQTFAQAGDSTRRNSFF
SEIIASISDVKFSPDGRYFVTRDYMNLRLWDMNMERAPVLVVPVHEQLRS
RFCDLYESDCIFDKFQCAFSHDGGSLLTGSYNSLFHAFSAYDGSSTAAEA
SVEFVSGICSRHRYTAEGLSVDRLRHASAAELVEPARRVLNLHASSTEAL
AAVAAGPAVYLFYGVGGGAAA*
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spliced messenger RNA

>Gvermi874.t1 ID=Gvermi874.t1|Name=Gvermi874.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=966bp|location=Sequence derived from alignment at ScGOVlb_2952:761862..762827+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCCATGCAGGCCGAGTGCATGGCCAAGTTCGTGACGGACCCGGC
GACGCTGACGATGCCGCGGCTGCAGCACCAGGGGCGGTTCATCACGGCGA
TCCCGCGGCGGTCGTTCAGCTCGCACAACTCGTACCACATTAACTCGATC
TCGCTCAACTCGGACGAGCAGACGTTCCTGTCGGCGGACGACCTGCGCGT
GAACGTGTGGAACCTGGAGCGGCAGGCGCAGGGCTTCAACGTGCTGGACG
TGAAGCCGAGCAACGTGGAGGACCTGACGGAGGTGGTGACGTGCGCGGTG
TTCCACCCGCGGCAGTGCCAGCTGTTTGCGCACTCGACGTCGCGCGGGGT
GGTGCGACTGTGCGACCTGCGCAGCTCGGCGCTGTGCGACTGCGCGTACG
CGCAGACGTTTGCGCAGGCGGGCGACAGCACGCGGCGCAACTCGTTCTTC
TCGGAGATCATTGCGTCGATCTCGGACGTGAAGTTCTCGCCGGACGGGCG
GTACTTTGTGACGCGCGACTACATGAACCTGCGGCTGTGGGACATGAACA
TGGAGCGGGCGCCGGTGCTGGTGGTGCCGGTGCACGAGCAGCTGCGCTCG
CGCTTCTGCGACCTGTACGAGAGCGACTGCATCTTTGACAAGTTCCAGTG
CGCGTTCTCGCACGACGGCGGGTCGCTGCTGACCGGCAGCTACAACTCGC
TGTTCCACGCGTTCTCTGCGTACGACGGGTCGAGCACGGCGGCGGAGGCG
AGCGTGGAGTTTGTGTCGGGCATCTGCTCGCGCCACCGGTACACGGCCGA
GGGGCTGTCGGTGGACCGGCTGCGGCACGCGAGCGCGGCGGAGCTGGTGG
AGCCGGCGCGGCGCGTGCTCAACCTGCACGCGTCGTCGACGGAGGCGCTG
GCGGCCGTGGCGGCGGGGCCGGCCGTGTACCTGTTTTACGGCGTGGGGGG
GGGCGCGGCCGCCTGA
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protein sequence of Gvermi874.t1

>Gvermi874.t1 ID=Gvermi874.t1|Name=Gvermi874.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=322bp
MRAMQAECMAKFVTDPATLTMPRLQHQGRFITAIPRRSFSSHNSYHINSI
SLNSDEQTFLSADDLRVNVWNLERQAQGFNVLDVKPSNVEDLTEVVTCAV
FHPRQCQLFAHSTSRGVVRLCDLRSSALCDCAYAQTFAQAGDSTRRNSFF
SEIIASISDVKFSPDGRYFVTRDYMNLRLWDMNMERAPVLVVPVHEQLRS
RFCDLYESDCIFDKFQCAFSHDGGSLLTGSYNSLFHAFSAYDGSSTAAEA
SVEFVSGICSRHRYTAEGLSVDRLRHASAAELVEPARRVLNLHASSTEAL
AAVAAGPAVYLFYGVGGGAAA*
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mRNA from alignment at ScGOVlb_2952:761862..762827+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi874.t1 ID=Gvermi874.t1|Name=Gvermi874.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=966bp|location=Sequence derived from alignment at ScGOVlb_2952:761862..762827+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGCCATGCAGGCCGAGTGCATGGCCAAGTTCGTGACGGACCCGGC
GACGCTGACGATGCCGCGGCTGCAGCACCAGGGGCGGTTCATCACGGCGA
TCCCGCGGCGGTCGTTCAGCTCGCACAACTCGTACCACATTAACTCGATC
TCGCTCAACTCGGACGAGCAGACGTTCCTGTCGGCGGACGACCTGCGCGT
GAACGTGTGGAACCTGGAGCGGCAGGCGCAGGGCTTCAACGTGCTGGACG
TGAAGCCGAGCAACGTGGAGGACCTGACGGAGGTGGTGACGTGCGCGGTG
TTCCACCCGCGGCAGTGCCAGCTGTTTGCGCACTCGACGTCGCGCGGGGT
GGTGCGACTGTGCGACCTGCGCAGCTCGGCGCTGTGCGACTGCGCGTACG
CGCAGACGTTTGCGCAGGCGGGCGACAGCACGCGGCGCAACTCGTTCTTC
TCGGAGATCATTGCGTCGATCTCGGACGTGAAGTTCTCGCCGGACGGGCG
GTACTTTGTGACGCGCGACTACATGAACCTGCGGCTGTGGGACATGAACA
TGGAGCGGGCGCCGGTGCTGGTGGTGCCGGTGCACGAGCAGCTGCGCTCG
CGCTTCTGCGACCTGTACGAGAGCGACTGCATCTTTGACAAGTTCCAGTG
CGCGTTCTCGCACGACGGCGGGTCGCTGCTGACCGGCAGCTACAACTCGC
TGTTCCACGCGTTCTCTGCGTACGACGGGTCGAGCACGGCGGCGGAGGCG
AGCGTGGAGTTTGTGTCGGGCATCTGCTCGCGCCACCGGTACACGGCCGA
GGGGCTGTCGGTGGACCGGCTGCGGCACGCGAGCGCGGCGGAGCTGGTGG
AGCCGGCGCGGCGCGTGCTCAACCTGCACGCGTCGTCGACGGAGGCGCTG
GCGGCCGTGGCGGCGGGGCCGGCCGTGTACCTGTTTTACGGCGTGGGGGG
GGGCGCGGCCGCCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:761862..762827+

>Gvermi874.t1 ID=Gvermi874.t1|Name=Gvermi874.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=966bp|location=Sequence derived from alignment at ScGOVlb_2952:761862..762827+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGCCATGCAGGCCGAGTGCATGGCCAAGTTCGTGACGGACCCGGC
GACGCTGACGATGCCGCGGCTGCAGCACCAGGGGCGGTTCATCACGGCGA
TCCCGCGGCGGTCGTTCAGCTCGCACAACTCGTACCACATTAACTCGATC
TCGCTCAACTCGGACGAGCAGACGTTCCTGTCGGCGGACGACCTGCGCGT
GAACGTGTGGAACCTGGAGCGGCAGGCGCAGGGCTTCAACGTGCTGGACG
TGAAGCCGAGCAACGTGGAGGACCTGACGGAGGTGGTGACGTGCGCGGTG
TTCCACCCGCGGCAGTGCCAGCTGTTTGCGCACTCGACGTCGCGCGGGGT
GGTGCGACTGTGCGACCTGCGCAGCTCGGCGCTGTGCGACTGCGCGTACG
CGCAGACGTTTGCGCAGGCGGGCGACAGCACGCGGCGCAACTCGTTCTTC
TCGGAGATCATTGCGTCGATCTCGGACGTGAAGTTCTCGCCGGACGGGCG
GTACTTTGTGACGCGCGACTACATGAACCTGCGGCTGTGGGACATGAACA
TGGAGCGGGCGCCGGTGCTGGTGGTGCCGGTGCACGAGCAGCTGCGCTCG
CGCTTCTGCGACCTGTACGAGAGCGACTGCATCTTTGACAAGTTCCAGTG
CGCGTTCTCGCACGACGGCGGGTCGCTGCTGACCGGCAGCTACAACTCGC
TGTTCCACGCGTTCTCTGCGTACGACGGGTCGAGCACGGCGGCGGAGGCG
AGCGTGGAGTTTGTGTCGGGCATCTGCTCGCGCCACCGGTACACGGCCGA
GGGGCTGTCGGTGGACCGGCTGCGGCACGCGAGCGCGGCGGAGCTGGTGG
AGCCGGCGCGGCGCGTGCTCAACCTGCACGCGTCGTCGACGGAGGCGCTG
GCGGCCGTGGCGGCGGGGCCGGCCGTGTACCTGTTTTACGGCGTGGGGGG
GGGCGCGGCCGCCTGA
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