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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 53485.EFQ87449 |
| Preferred name | NOP14 |
| PFAMs | Nop14 |
| Max annot lvl | 4751|Fungi |
| KEGG ko | ko:K14766 |
| GOs | GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0030688,GO:0030689,GO:0030692,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904 |
| Evalue | 4.2e-21 |
| EggNOG OGs | KOG2147@1|root,KOG2147@2759|Eukaryota,38BJG@33154|Opisthokonta,3NX37@4751|Fungi,3QP8I@4890|Ascomycota,1ZXXZ@147541|Dothideomycetes,4KDTB@92860|Pleosporales |
| Description | Nop14-like family |
| COG category | J |
| BRITE | ko00000,ko03009 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi780.t1 ID=Gvermi780.t1|Name=Gvermi780.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=779bp MPSKGKRPLLHSRAKECQPSNLFDEQWNKIHRTTQRKKLQRKNTHSSNQI LDKRIGERNPNLDEQSRYLFRLQRERAKRVKKHVLFTLNDEDQSDDEVER SPFLERTDGPVPSEAEEGSELSGSVEDAEKPFFSIKEAEDGPAEQQQEAE SDLRSKKEVMQEVIEKSKMFKTLRQHIKHKTDEETLKLDEKLPQIMQLLA KSNAETPSKISKLNLKSTVKNVSIFGDEERLMNRNKSFSYEDVYRQLALE KRAAPSERLLTEEESAQRQKEQLMRLEKLRNSRMRNIADDDDVRSKSKTS GDDNNDDFEDILSHTEESSDESEYESHIENGDGMNGDQRITDLSVESFLA VESGGLKNIPFVYKKMPFSEADLQRLFEGTTVQQRSIIMDRLGKCFASSL NPGKNRPKLVRLSELALQRVLSLCRITKRFSTVVAEVDMLIGQVHKLGFE QVANAWGRRQILQSYTRLREGQGGLSERWGVFDVMVLRAVGALFPASDAR HVVSTPLQILLSEALSMEYMKSIGDVGLGVFVGNVLLELLVEAERFSPLL AAFSVEILRACGRNGRLCSVLNYTHDPLSGSLTLSEVASIMMGSAYDEKT ITVKIVNAAICFAEELTFSGRLPHADLVFSQIPLKQLPHDLATRMEALFT RCRKGRLPLQLYTKNNDKQSFKLRNPRFSSENGVYRKRPKSTFDSELNGD VSASAKRIRRALKKEERGLARDVRREAELHAADEAATERINREDRDARDK TVRAFFETQQATWRAAEKRQKKLSGKKW* back to topspliced messenger RNA >Gvermi780.t1 ID=Gvermi780.t1|Name=Gvermi780.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2337bp|location=Sequence derived from alignment at ScGOVlb_2952:235934..238270+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCCTTCGAAAGGTAAGCGCCCTTTGCTTCATTCAAGAGCGAAGGAATG TCAACCTTCAAATCTTTTCGACGAGCAATGGAACAAGATCCATCGCACCA CGCAGCGAAAGAAACTTCAGCGAAAAAATACGCACTCGTCGAATCAAATA TTGGACAAAAGAATTGGTGAAAGAAACCCGAATCTGGATGAACAATCTCG TTATTTATTCCGCTTGCAACGCGAGCGGGCAAAGCGAGTTAAGAAACATG TTCTTTTTACGCTGAACGATGAGGATCAAAGTGACGACGAAGTTGAGCGG TCTCCTTTTCTGGAACGAACTGATGGCCCTGTGCCTTCAGAAGCTGAGGA GGGCTCTGAATTGAGCGGGTCCGTTGAAGATGCTGAAAAGCCTTTCTTTT CAATAAAAGAAGCTGAGGATGGACCTGCCGAGCAGCAGCAGGAGGCAGAA TCAGATCTTCGTTCGAAGAAAGAGGTTATGCAAGAAGTTATTGAAAAGAG CAAAATGTTCAAAACTCTTCGGCAACACATCAAGCATAAAACGGACGAGG AGACACTGAAACTAGATGAGAAGCTACCTCAAATTATGCAACTCTTGGCC AAATCAAACGCAGAAACTCCCTCAAAGATTTCAAAGCTGAACCTTAAGAG TACTGTGAAAAACGTATCCATTTTTGGAGATGAAGAGCGGTTAATGAACC GAAACAAGTCATTCAGTTACGAAGATGTGTACAGACAGCTTGCACTTGAA AAGCGAGCGGCACCATCCGAACGCCTACTCACTGAGGAGGAGTCGGCACA GCGTCAAAAGGAACAACTTATGCGACTTGAAAAGCTTCGAAACTCTCGCA TGAGAAACATTGCTGATGACGATGATGTAAGATCGAAGTCAAAAACCAGT GGTGATGATAACAACGATGATTTTGAAGATATTCTGTCACACACTGAAGA ATCGAGTGATGAAAGTGAGTATGAGTCCCATATTGAAAACGGTGACGGAA TGAATGGAGATCAAAGGATTACGGATCTATCCGTCGAAAGTTTCCTGGCC GTGGAAAGCGGTGGTCTGAAGAATATACCGTTCGTATACAAGAAGATGCC CTTCAGCGAGGCTGATCTTCAGCGCTTGTTCGAGGGTACAACCGTTCAAC AGCGCTCCATAATAATGGACAGGCTTGGCAAGTGTTTTGCATCGTCACTT AACCCTGGAAAGAATCGTCCGAAGTTAGTCCGACTTTCAGAACTTGCCTT ACAAAGAGTGTTGTCTCTTTGCAGAATTACCAAACGTTTTTCTACTGTCG TGGCTGAGGTCGATATGCTAATAGGTCAAGTGCACAAGCTCGGCTTCGAG CAGGTTGCGAATGCATGGGGCCGTCGGCAGATCCTGCAGTCGTATACGAG GCTGCGTGAAGGTCAAGGTGGTCTCAGCGAACGGTGGGGGGTATTCGATG TAATGGTTCTCCGTGCTGTTGGTGCCCTTTTTCCGGCGTCCGATGCCAGA CATGTCGTTTCAACGCCTCTACAAATTCTTTTATCCGAAGCGCTTTCCAT GGAGTACATGAAGTCCATCGGAGACGTTGGCCTGGGAGTTTTTGTCGGGA ATGTTCTACTTGAGCTACTCGTTGAAGCAGAGCGCTTTTCTCCATTGTTG GCTGCGTTTAGTGTTGAAATTCTTCGCGCCTGTGGAAGAAATGGGCGTCT GTGCTCAGTGCTCAATTATACCCATGACCCGTTGAGTGGCAGTTTGACCT TATCAGAAGTCGCATCTATCATGATGGGCTCTGCATATGACGAAAAGACA ATCACCGTCAAGATAGTCAACGCCGCAATATGTTTCGCCGAAGAGCTCAC ATTTTCTGGACGATTGCCTCACGCAGATCTAGTATTCTCGCAAATCCCAC TCAAGCAGCTTCCACACGATTTGGCAACTCGCATGGAGGCTTTGTTCACC AGATGTAGAAAAGGCAGACTTCCTCTGCAACTCTATACAAAGAACAATGA CAAACAGTCTTTCAAACTTCGCAACCCCCGATTTTCAAGTGAGAATGGCG TGTACCGCAAGCGACCAAAGAGCACGTTTGATTCCGAGTTGAATGGTGAT GTTTCTGCTTCCGCAAAGCGGATTCGCAGAGCTCTAAAGAAGGAAGAACG CGGGTTGGCTCGGGATGTCAGAAGGGAAGCGGAGCTACATGCCGCTGATG AAGCTGCAACGGAAAGGATTAATAGGGAGGATCGCGATGCAAGAGATAAG ACTGTGAGAGCTTTCTTTGAAACGCAACAGGCAACATGGAGAGCAGCCGA GAAGCGGCAGAAGAAGCTTAGCGGGAAGAAATGGTGA back to topprotein sequence of Gvermi780.t1 >Gvermi780.t1 ID=Gvermi780.t1|Name=Gvermi780.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=779bp
MPSKGKRPLLHSRAKECQPSNLFDEQWNKIHRTTQRKKLQRKNTHSSNQI LDKRIGERNPNLDEQSRYLFRLQRERAKRVKKHVLFTLNDEDQSDDEVER SPFLERTDGPVPSEAEEGSELSGSVEDAEKPFFSIKEAEDGPAEQQQEAE SDLRSKKEVMQEVIEKSKMFKTLRQHIKHKTDEETLKLDEKLPQIMQLLA KSNAETPSKISKLNLKSTVKNVSIFGDEERLMNRNKSFSYEDVYRQLALE KRAAPSERLLTEEESAQRQKEQLMRLEKLRNSRMRNIADDDDVRSKSKTS GDDNNDDFEDILSHTEESSDESEYESHIENGDGMNGDQRITDLSVESFLA VESGGLKNIPFVYKKMPFSEADLQRLFEGTTVQQRSIIMDRLGKCFASSL NPGKNRPKLVRLSELALQRVLSLCRITKRFSTVVAEVDMLIGQVHKLGFE QVANAWGRRQILQSYTRLREGQGGLSERWGVFDVMVLRAVGALFPASDAR HVVSTPLQILLSEALSMEYMKSIGDVGLGVFVGNVLLELLVEAERFSPLL AAFSVEILRACGRNGRLCSVLNYTHDPLSGSLTLSEVASIMMGSAYDEKT ITVKIVNAAICFAEELTFSGRLPHADLVFSQIPLKQLPHDLATRMEALFT RCRKGRLPLQLYTKNNDKQSFKLRNPRFSSENGVYRKRPKSTFDSELNGD VSASAKRIRRALKKEERGLARDVRREAELHAADEAATERINREDRDARDK TVRAFFETQQATWRAAEKRQKKLSGKKW* back to topmRNA from alignment at ScGOVlb_2952:235934..238270+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi780.t1 ID=Gvermi780.t1|Name=Gvermi780.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2337bp|location=Sequence derived from alignment at ScGOVlb_2952:235934..238270+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGCCTTCGAAAGGTAAGCGCCCTTTGCTTCATTCAAGAGCGAAGGAATG
TCAACCTTCAAATCTTTTCGACGAGCAATGGAACAAGATCCATCGCACCA
CGCAGCGAAAGAAACTTCAGCGAAAAAATACGCACTCGTCGAATCAAATA
TTGGACAAAAGAATTGGTGAAAGAAACCCGAATCTGGATGAACAATCTCG
TTATTTATTCCGCTTGCAACGCGAGCGGGCAAAGCGAGTTAAGAAACATG
TTCTTTTTACGCTGAACGATGAGGATCAAAGTGACGACGAAGTTGAGCGG
TCTCCTTTTCTGGAACGAACTGATGGCCCTGTGCCTTCAGAAGCTGAGGA
GGGCTCTGAATTGAGCGGGTCCGTTGAAGATGCTGAAAAGCCTTTCTTTT
CAATAAAAGAAGCTGAGGATGGACCTGCCGAGCAGCAGCAGGAGGCAGAA
TCAGATCTTCGTTCGAAGAAAGAGGTTATGCAAGAAGTTATTGAAAAGAG
CAAAATGTTCAAAACTCTTCGGCAACACATCAAGCATAAAACGGACGAGG
AGACACTGAAACTAGATGAGAAGCTACCTCAAATTATGCAACTCTTGGCC
AAATCAAACGCAGAAACTCCCTCAAAGATTTCAAAGCTGAACCTTAAGAG
TACTGTGAAAAACGTATCCATTTTTGGAGATGAAGAGCGGTTAATGAACC
GAAACAAGTCATTCAGTTACGAAGATGTGTACAGACAGCTTGCACTTGAA
AAGCGAGCGGCACCATCCGAACGCCTACTCACTGAGGAGGAGTCGGCACA
GCGTCAAAAGGAACAACTTATGCGACTTGAAAAGCTTCGAAACTCTCGCA
TGAGAAACATTGCTGATGACGATGATGTAAGATCGAAGTCAAAAACCAGT
GGTGATGATAACAACGATGATTTTGAAGATATTCTGTCACACACTGAAGA
ATCGAGTGATGAAAGTGAGTATGAGTCCCATATTGAAAACGGTGACGGAA
TGAATGGAGATCAAAGGATTACGGATCTATCCGTCGAAAGTTTCCTGGCC
GTGGAAAGCGGTGGTCTGAAGAATATACCGTTCGTATACAAGAAGATGCC
CTTCAGCGAGGCTGATCTTCAGCGCTTGTTCGAGGGTACAACCGTTCAAC
AGCGCTCCATAATAATGGACAGGCTTGGCAAGTGTTTTGCATCGTCACTT
AACCCTGGAAAGAATCGTCCGAAGTTAGTCCGACTTTCAGAACTTGCCTT
ACAAAGAGTGTTGTCTCTTTGCAGAATTACCAAACGTTTTTCTACTGTCG
TGGCTGAGGTCGATATGCTAATAGGTCAAGTGCACAAGCTCGGCTTCGAG
CAGGTTGCGAATGCATGGGGCCGTCGGCAGATCCTGCAGTCGTATACGAG
GCTGCGTGAAGGTCAAGGTGGTCTCAGCGAACGGTGGGGGGTATTCGATG
TAATGGTTCTCCGTGCTGTTGGTGCCCTTTTTCCGGCGTCCGATGCCAGA
CATGTCGTTTCAACGCCTCTACAAATTCTTTTATCCGAAGCGCTTTCCAT
GGAGTACATGAAGTCCATCGGAGACGTTGGCCTGGGAGTTTTTGTCGGGA
ATGTTCTACTTGAGCTACTCGTTGAAGCAGAGCGCTTTTCTCCATTGTTG
GCTGCGTTTAGTGTTGAAATTCTTCGCGCCTGTGGAAGAAATGGGCGTCT
GTGCTCAGTGCTCAATTATACCCATGACCCGTTGAGTGGCAGTTTGACCT
TATCAGAAGTCGCATCTATCATGATGGGCTCTGCATATGACGAAAAGACA
ATCACCGTCAAGATAGTCAACGCCGCAATATGTTTCGCCGAAGAGCTCAC
ATTTTCTGGACGATTGCCTCACGCAGATCTAGTATTCTCGCAAATCCCAC
TCAAGCAGCTTCCACACGATTTGGCAACTCGCATGGAGGCTTTGTTCACC
AGATGTAGAAAAGGCAGACTTCCTCTGCAACTCTATACAAAGAACAATGA
CAAACAGTCTTTCAAACTTCGCAACCCCCGATTTTCAAGTGAGAATGGCG
TGTACCGCAAGCGACCAAAGAGCACGTTTGATTCCGAGTTGAATGGTGAT
GTTTCTGCTTCCGCAAAGCGGATTCGCAGAGCTCTAAAGAAGGAAGAACG
CGGGTTGGCTCGGGATGTCAGAAGGGAAGCGGAGCTACATGCCGCTGATG
AAGCTGCAACGGAAAGGATTAATAGGGAGGATCGCGATGCAAGAGATAAG
ACTGTGAGAGCTTTCTTTGAAACGCAACAGGCAACATGGAGAGCAGCCGA
GAAGCGGCAGAAGAAGCTTAGCGGGAAGAAATGGTGA back to topCoding sequence (CDS) from alignment at ScGOVlb_2952:235934..238270+ >Gvermi780.t1 ID=Gvermi780.t1|Name=Gvermi780.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2337bp|location=Sequence derived from alignment at ScGOVlb_2952:235934..238270+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGCCTTCGAAAGGTAAGCGCCCTTTGCTTCATTCAAGAGCGAAGGAATG TCAACCTTCAAATCTTTTCGACGAGCAATGGAACAAGATCCATCGCACCA CGCAGCGAAAGAAACTTCAGCGAAAAAATACGCACTCGTCGAATCAAATA TTGGACAAAAGAATTGGTGAAAGAAACCCGAATCTGGATGAACAATCTCG TTATTTATTCCGCTTGCAACGCGAGCGGGCAAAGCGAGTTAAGAAACATG TTCTTTTTACGCTGAACGATGAGGATCAAAGTGACGACGAAGTTGAGCGG TCTCCTTTTCTGGAACGAACTGATGGCCCTGTGCCTTCAGAAGCTGAGGA GGGCTCTGAATTGAGCGGGTCCGTTGAAGATGCTGAAAAGCCTTTCTTTT CAATAAAAGAAGCTGAGGATGGACCTGCCGAGCAGCAGCAGGAGGCAGAA TCAGATCTTCGTTCGAAGAAAGAGGTTATGCAAGAAGTTATTGAAAAGAG CAAAATGTTCAAAACTCTTCGGCAACACATCAAGCATAAAACGGACGAGG AGACACTGAAACTAGATGAGAAGCTACCTCAAATTATGCAACTCTTGGCC AAATCAAACGCAGAAACTCCCTCAAAGATTTCAAAGCTGAACCTTAAGAG TACTGTGAAAAACGTATCCATTTTTGGAGATGAAGAGCGGTTAATGAACC GAAACAAGTCATTCAGTTACGAAGATGTGTACAGACAGCTTGCACTTGAA AAGCGAGCGGCACCATCCGAACGCCTACTCACTGAGGAGGAGTCGGCACA GCGTCAAAAGGAACAACTTATGCGACTTGAAAAGCTTCGAAACTCTCGCA TGAGAAACATTGCTGATGACGATGATGTAAGATCGAAGTCAAAAACCAGT GGTGATGATAACAACGATGATTTTGAAGATATTCTGTCACACACTGAAGA ATCGAGTGATGAAAGTGAGTATGAGTCCCATATTGAAAACGGTGACGGAA TGAATGGAGATCAAAGGATTACGGATCTATCCGTCGAAAGTTTCCTGGCC GTGGAAAGCGGTGGTCTGAAGAATATACCGTTCGTATACAAGAAGATGCC CTTCAGCGAGGCTGATCTTCAGCGCTTGTTCGAGGGTACAACCGTTCAAC AGCGCTCCATAATAATGGACAGGCTTGGCAAGTGTTTTGCATCGTCACTT AACCCTGGAAAGAATCGTCCGAAGTTAGTCCGACTTTCAGAACTTGCCTT ACAAAGAGTGTTGTCTCTTTGCAGAATTACCAAACGTTTTTCTACTGTCG TGGCTGAGGTCGATATGCTAATAGGTCAAGTGCACAAGCTCGGCTTCGAG CAGGTTGCGAATGCATGGGGCCGTCGGCAGATCCTGCAGTCGTATACGAG GCTGCGTGAAGGTCAAGGTGGTCTCAGCGAACGGTGGGGGGTATTCGATG TAATGGTTCTCCGTGCTGTTGGTGCCCTTTTTCCGGCGTCCGATGCCAGA CATGTCGTTTCAACGCCTCTACAAATTCTTTTATCCGAAGCGCTTTCCAT GGAGTACATGAAGTCCATCGGAGACGTTGGCCTGGGAGTTTTTGTCGGGA ATGTTCTACTTGAGCTACTCGTTGAAGCAGAGCGCTTTTCTCCATTGTTG GCTGCGTTTAGTGTTGAAATTCTTCGCGCCTGTGGAAGAAATGGGCGTCT GTGCTCAGTGCTCAATTATACCCATGACCCGTTGAGTGGCAGTTTGACCT TATCAGAAGTCGCATCTATCATGATGGGCTCTGCATATGACGAAAAGACA ATCACCGTCAAGATAGTCAACGCCGCAATATGTTTCGCCGAAGAGCTCAC ATTTTCTGGACGATTGCCTCACGCAGATCTAGTATTCTCGCAAATCCCAC TCAAGCAGCTTCCACACGATTTGGCAACTCGCATGGAGGCTTTGTTCACC AGATGTAGAAAAGGCAGACTTCCTCTGCAACTCTATACAAAGAACAATGA CAAACAGTCTTTCAAACTTCGCAACCCCCGATTTTCAAGTGAGAATGGCG TGTACCGCAAGCGACCAAAGAGCACGTTTGATTCCGAGTTGAATGGTGAT GTTTCTGCTTCCGCAAAGCGGATTCGCAGAGCTCTAAAGAAGGAAGAACG CGGGTTGGCTCGGGATGTCAGAAGGGAAGCGGAGCTACATGCCGCTGATG AAGCTGCAACGGAAAGGATTAATAGGGAGGATCGCGATGCAAGAGATAAG ACTGTGAGAGCTTTCTTTGAAACGCAACAGGCAACATGGAGAGCAGCCGA GAAGCGGCAGAAGAAGCTTAGCGGGAAGAAATGGTGA back to top
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