Gvermi799.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi799.t1
Unique NameGvermi799.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length413
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:376440..377803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi799Gvermi799Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 376440..377803 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi799.t1Gvermi799.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 376440..377803 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi799.t1.start1Gvermi799.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 376440..376442 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi799.t1.CDS1Gvermi799.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 376440..377494 +
Gvermi799.t1.CDS2Gvermi799.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 377620..377803 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi799.t1.exon1Gvermi799.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 376440..377494 +
Gvermi799.t1.exon2Gvermi799.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 377620..377803 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi799.t1.intron1Gvermi799.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2952 377495..377619 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi799.t1.stop1Gvermi799.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 377801..377803 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi799.t1 ID=Gvermi799.t1|Name=Gvermi799.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=413bp
MLSPDVLSFHYPLVDAPAPAVQDAVSRLVPEHYRHLAHDPPFVPPELVPA
ALRLARDRHRSIAALTAQSDRLLRAAVLDTSHWGYVVARARPFFDSYNAG
RAARLIAVHAMQRLCLHVSGSAKPPALDDAHVARLCHSVFSPTPTGHMRP
LPKGRTAAGVVLRPATGRFAKRLRADADHMIMLTREPDHESAHLTSTRLR
GNYTCAPLAPGRLEYWDNRFVIGAAPVSALQPHDHVPLLHPRRVFEAALQ
PAANHAQRITDCTLYVRQLRRADWDLITSVSSRARNFQTPFECIRALPAV
FQKPAATCEPGELVASPHLGLSARPDLCFVAVRLPRFRCLPADLDPGFTL
LHAVNMDTLAIRMSHICPTPKDKVTQMKLLKYDQAFHMCTRTTFVAVIML
LGNLIEIAFARI*
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spliced messenger RNA

>Gvermi799.t1 ID=Gvermi799.t1|Name=Gvermi799.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1239bp|location=Sequence derived from alignment at ScGOVlb_2952:376440..377803+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTCCCCCGACGTGCTGTCCTTCCACTACCCGCTCGTCGACGCCCC
CGCGCCCGCCGTGCAGGACGCTGTCTCCCGCCTCGTCCCGGAGCACTATC
GCCAcctcgcccacgacccccccttcgtaccgcccgagctcgtgcccgca
gccctgcgtctggcccgcgaccgccaccgctccatcgccGCCCTCACCGC
CCAGTCGGACCGTCTGCTGCGCGCCGCCGTCCTGGACACCAGTCACTGGG
GCTACGTCGTCGCCCGAGCGCGCCCTTTCTTCGACAGCTACAACGCCGGC
CGTGCCGCCCGACTCATCGCCGTCCACGCCATGCAGCGCCTGTGCCTGCA
TGTGTCCGGCTCGGCTAAGCCGCCCGCCCTGGACGACGCCCACGTAGCCC
GCCTGTGCCACTCCGTCTTCTCGCCCACGCCCACCGGCCACATGCGCCCG
CTGCCCAAGGGGCGCACCGCCGCCGGCGTCGTCTTGCGCCCGGCCACCGG
CCGCTTCGCCAAGCGCCTGCGCGCCGACGCCGACCACATGATCATGCTCA
CGCGCGAGCCGGATCACGAGAGCGCCCACCTCACGTCCACGCGCCTGCGC
GGCAACTACACCTGCGCCCCGCTCGCCCCCGGCCGCCTCGAGTACTGGGA
CAACCGCTTCGTCATCGGCGCCGCCCCCGTGTCCGCCCTGCAGCCGCACG
ACCACGTGCCGCTGCTGCACCCGCGCCGCGTCTTCGAGGCTGCGCTGCAG
CCCGCCGCCAACCACGCGCAGCGCATCACCGACTGCACGCTGTACGTGCG
CCAGCTGCGCCGCGCCGACTGGGACCTCATCACGTCCGTGTCCAGCCGCG
CGCGCAACTTCCAGACGCCCTTTGAGTGCATCCGCGCGCTGCCCGCCGTC
TTCCAGAAGCCGGCCGCAACGTGCGAGCCCGGCGAGCTCGTCGCCTCCCC
GCACCTGGGGCTCAGCGCGCGCCCGGACCTGTGCTTTGTCGCCGTTCGTC
TGCCGCGCTTCCGCTGCCTGCCTGCCGACCTCGACCCAGGGTTCACCCTC
CTCCACGCTGTCAACATGGACACTCTGGCAATTAGAATGAGCCACATCTG
TCCCACACCAAAAGACAAAGTGACACAGATGAAGCTCTTAAAGTACGATC
AAGCGTTCCACATGTGTACTCGAACAACATTCGTCGCAGTAATCATGCTC
TTGGGTAATTTGATAGAGATAGCTTTCGCGCGAATCTGA
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protein sequence of Gvermi799.t1

>Gvermi799.t1 ID=Gvermi799.t1|Name=Gvermi799.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=413bp
MLSPDVLSFHYPLVDAPAPAVQDAVSRLVPEHYRHLAHDPPFVPPELVPA
ALRLARDRHRSIAALTAQSDRLLRAAVLDTSHWGYVVARARPFFDSYNAG
RAARLIAVHAMQRLCLHVSGSAKPPALDDAHVARLCHSVFSPTPTGHMRP
LPKGRTAAGVVLRPATGRFAKRLRADADHMIMLTREPDHESAHLTSTRLR
GNYTCAPLAPGRLEYWDNRFVIGAAPVSALQPHDHVPLLHPRRVFEAALQ
PAANHAQRITDCTLYVRQLRRADWDLITSVSSRARNFQTPFECIRALPAV
FQKPAATCEPGELVASPHLGLSARPDLCFVAVRLPRFRCLPADLDPGFTL
LHAVNMDTLAIRMSHICPTPKDKVTQMKLLKYDQAFHMCTRTTFVAVIML
LGNLIEIAFARI*
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mRNA from alignment at ScGOVlb_2952:376440..377803+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi799.t1 ID=Gvermi799.t1|Name=Gvermi799.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1364bp|location=Sequence derived from alignment at ScGOVlb_2952:376440..377803+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGTCCCCCGACGTGCTGTCCTTCCACTACCCGCTCGTCGACGCCCC
CGCGCCCGCCGTGCAGGACGCTGTCTCCCGCCTCGTCCCGGAGCACTATC
GCCAcctcgcccacgacccccccttcgtaccgcccgagctcgtgcccgca
gccctgcgtctggcccgcgaccgccaccgctccatcgccGCCCTCACCGC
CCAGTCGGACCGTCTGCTGCGCGCCGCCGTCCTGGACACCAGTCACTGGG
GCTACGTCGTCGCCCGAGCGCGCCCTTTCTTCGACAGCTACAACGCCGGC
CGTGCCGCCCGACTCATCGCCGTCCACGCCATGCAGCGCCTGTGCCTGCA
TGTGTCCGGCTCGGCTAAGCCGCCCGCCCTGGACGACGCCCACGTAGCCC
GCCTGTGCCACTCCGTCTTCTCGCCCACGCCCACCGGCCACATGCGCCCG
CTGCCCAAGGGGCGCACCGCCGCCGGCGTCGTCTTGCGCCCGGCCACCGG
CCGCTTCGCCAAGCGCCTGCGCGCCGACGCCGACCACATGATCATGCTCA
CGCGCGAGCCGGATCACGAGAGCGCCCACCTCACGTCCACGCGCCTGCGC
GGCAACTACACCTGCGCCCCGCTCGCCCCCGGCCGCCTCGAGTACTGGGA
CAACCGCTTCGTCATCGGCGCCGCCCCCGTGTCCGCCCTGCAGCCGCACG
ACCACGTGCCGCTGCTGCACCCGCGCCGCGTCTTCGAGGCTGCGCTGCAG
CCCGCCGCCAACCACGCGCAGCGCATCACCGACTGCACGCTGTACGTGCG
CCAGCTGCGCCGCGCCGACTGGGACCTCATCACGTCCGTGTCCAGCCGCG
CGCGCAACTTCCAGACGCCCTTTGAGTGCATCCGCGCGCTGCCCGCCGTC
TTCCAGAAGCCGGCCGCAACGTGCGAGCCCGGCGAGCTCGTCGCCTCCCC
GCACCTGGGGCTCAGCGCGCGCCCGGACCTGTGCTTTGTCGCCGTTCGTC
TGCCGCGCTTCCGCTGCCTGCCTGCCGACCTCGACCCAGGGTTCACCCTC
CTCCAGTACGAAAAATGGCGCGCTGAGTCCCATCCGACTCACCCTCGCCA
CTCCAAGCGTTCAGCGCAGCGCGTCCTCACCTGATATTTTTTGTAACTTC
GTATCATTGCCTTGGCTTGCTCTGCGACAGCGCTGTCAACATGGACACTC
TGGCAATTAGAATGAGCCACATCTGTCCCACACCAAAAGACAAAGTGACA
CAGATGAAGCTCTTAAAGTACGATCAAGCGTTCCACATGTGTACTCGAAC
AACATTCGTCGCAGTAATCATGCTCTTGGGTAATTTGATAGAGATAGCTT
TCGCGCGAATCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:376440..377803+

>Gvermi799.t1 ID=Gvermi799.t1|Name=Gvermi799.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1239bp|location=Sequence derived from alignment at ScGOVlb_2952:376440..377803+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGTCCCCCGACGTGCTGTCCTTCCACTACCCGCTCGTCGACGCCCC
CGCGCCCGCCGTGCAGGACGCTGTCTCCCGCCTCGTCCCGGAGCACTATC
GCCAcctcgcccacgacccccccttcgtaccgcccgagctcgtgcccgca
gccctgcgtctggcccgcgaccgccaccgctccatcgccGCCCTCACCGC
CCAGTCGGACCGTCTGCTGCGCGCCGCCGTCCTGGACACCAGTCACTGGG
GCTACGTCGTCGCCCGAGCGCGCCCTTTCTTCGACAGCTACAACGCCGGC
CGTGCCGCCCGACTCATCGCCGTCCACGCCATGCAGCGCCTGTGCCTGCA
TGTGTCCGGCTCGGCTAAGCCGCCCGCCCTGGACGACGCCCACGTAGCCC
GCCTGTGCCACTCCGTCTTCTCGCCCACGCCCACCGGCCACATGCGCCCG
CTGCCCAAGGGGCGCACCGCCGCCGGCGTCGTCTTGCGCCCGGCCACCGG
CCGCTTCGCCAAGCGCCTGCGCGCCGACGCCGACCACATGATCATGCTCA
CGCGCGAGCCGGATCACGAGAGCGCCCACCTCACGTCCACGCGCCTGCGC
GGCAACTACACCTGCGCCCCGCTCGCCCCCGGCCGCCTCGAGTACTGGGA
CAACCGCTTCGTCATCGGCGCCGCCCCCGTGTCCGCCCTGCAGCCGCACG
ACCACGTGCCGCTGCTGCACCCGCGCCGCGTCTTCGAGGCTGCGCTGCAG
CCCGCCGCCAACCACGCGCAGCGCATCACCGACTGCACGCTGTACGTGCG
CCAGCTGCGCCGCGCCGACTGGGACCTCATCACGTCCGTGTCCAGCCGCG
CGCGCAACTTCCAGACGCCCTTTGAGTGCATCCGCGCGCTGCCCGCCGTC
TTCCAGAAGCCGGCCGCAACGTGCGAGCCCGGCGAGCTCGTCGCCTCCCC
GCACCTGGGGCTCAGCGCGCGCCCGGACCTGTGCTTTGTCGCCGTTCGTC
TGCCGCGCTTCCGCTGCCTGCCTGCCGACCTCGACCCAGGGTTCACCCTC
CTCCACGCTGTCAACATGGACACTCTGGCAATTAGAATGAGCCACATCTG
TCCCACACCAAAAGACAAAGTGACACAGATGAAGCTCTTAAAGTACGATC
AAGCGTTCCACATGTGTACTCGAACAACATTCGTCGCAGTAATCATGCTC
TTGGGTAATTTGATAGAGATAGCTTTCGCGCGAATCTGA
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