Gvermi877.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi877.t1
Unique Name	Gvermi877.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	650

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_2952	contig	ScGOVlb_2952:777910..779859 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	313596.RB2501_13599
PFAMs	Collagen_bind_2,DUF5060
Max annot lvl	976\|Bacteroidetes
Evalue	9e-131
EggNOG OGs	COG5492@1\|root,COG5492@2\|Bacteria,4NEAB@976\|Bacteroidetes,1HZEP@117743\|Flavobacteriia
Description	Domain of unknown function (DUF5060)
COG category	N

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi877	Gvermi877	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_2952 777910..779859 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi877.t1.start1	Gvermi877.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_2952 777910..777912 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi877.t1.CDS1	Gvermi877.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_2952 777910..779859 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi877.t1.exon1	Gvermi877.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_2952 777910..779859 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi877.t1.stop1	Gvermi877.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_2952 779857..779859 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi877.t1	Gvermi877.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_2952 777910..779859 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_2952:777910..779859+
coding sequence from alignment at ScGOVlb_2952:777910..779859+

mRNA sequence

>Gvermi877.t1 ID=Gvermi877.t1|Name=Gvermi877.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=650bp
MWFSAFFVFFFIAFVKAAEVSPVEPARWELVSIDFEGPQTSEAATPNPFT
DYRLDVTFTHPASGVRHVVPGFYAADGNAAHTSAESGNIWRVRFTPERTG
TWSYVASFRKGDYIAVRDIDGVPESIDGDGGSFVVSARDFQAPDLRAKGR
LQYVGQRYYRYANGEYKLKLGTNTPENVLAYEEFDGEQTPLTFKSHRKDW
NSGDPTWGDDGRGKGMIGAVNYLSSMGVNSLFAITMTVKGDSKGQVHPWR
SRADRIRYDVSKLEQWEIVFDHAERKGISLNLAFCETENEALFEHEAGIS
TSNGFALSRKVYYRELIARFSHHLGFATIIGEENGWSEKEHNGGGFPWGV
ANTDQQRKKFSRFIRNTDPYKSPIGVHTYPPLKDEVYTPMLGPHSGFRHE
SASLQMGRKWSTYHETKHWVDQSIVHGMPWVVAADEIGADSPGMPGGIPP
ASMGTPNISFRAVFCWGNIMAGGAGVEVFSGAVDQSLSNFREFDSVWAEF
SRPIRLFEQHNIPYWAMHADPGVVTPKKMLNDDQWLYGFAKRDDVYVVYQ
SGEIEPLLNLSGVGGKFHVRWFNPRPSSSTSLELGSVLTVVGGADKVELG
KPPFARHRDWAIVVSRTFPLSNIATKVSSVSPHDLIPDSLTFGTNASHW*

spliced messenger RNA

>Gvermi877.t1 ID=Gvermi877.t1|Name=Gvermi877.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1950bp|location=Sequence derived from alignment at ScGOVlb_2952:777910..779859+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGTTTTCGGCATTTTTCGTTTTCTTCTTCATTGCATTTGTAAAGGC
TGCTGAGGTCTCTCCGGTGGAACCTGCGCGATGGGAGCTCGTTTCGATAG
ACTTTGAAGGGCCGCAAACCAGCGAAGCGGCTACGCCCAACCCTTTCACT
GATTATCGCCTGGATGTCACTTTCACTCACCCCGCTTCTGGCGTGAGACA
TGTTGTGCCGGGCTTCTATGCTGCGGATGGAAATGCCGCTCATACTTCGG
CTGAAAGCGGGAATATCTGGCGTGTGCGTTTTACTCCGGAACGGACTGGC
ACTTGGTCTTATGTCGCTTCTTTTCGGAAAGGTGACTACATAGCCGTCAG
GGATATTGATGGGGTGCCGGAATCTATTGACGGAGACGGTGGAAGTTTTG
TGGTAAGCGCGCGCGACTTTCAAGCACCAGACTTGCGAGCGAAGGGGAGA
CTTCAGTACGTCGGCCAGAGATACTATCGCTACGCCAACGGGGAATACAA
ATTGAAACTTGGCACGAACACGCCTGAAAATGTGCTCGCTTACGAGGAGT
TCGATGGAGAGCAGACACCACTCACGTTTAAATCGCATCGGAAGGATTGG
AACAGTGGGGACCCCACATGGGGTGATGATGGCCGTGGCAAGGGAATGAT
TGGCGCTGTCAACTACCTTTCCAGCATGGGCGTCAATTCTCTGTTTGCTA
TTACAATGACTGTAAAGGGCGACAGCAAGGGGCAGGTTCATCCGTGGCGT
TCTCGGGCCGACCGGATTCGATACGACGTTAGCAAGCTAGAGCAATGGGA
AATTGTCTTTGACCATGCTGAACGAAAGGGAATCTCTCTCAACCTGGCTT
TTTGTGAAACAGAAAACGAGGCCCTTTTCGAACATGAGGCTGGAATTTCA
ACGTCAAACGGATTCGCCTTATCGAGAAAAGTGTACTACAGAGAGCTCAT
AGCCCGTTTCTCGCACCATCTTGGGTTTGCTACAATAATCGGCGAGGAGA
ACGGGTGGTCAGAGAAGGAGCACAATGGTGGAGGTTTCCCCTGGGGAGTG
GCCAACACTGACCAGCAGCGAAAGAAATTCTCTCGGTTTATCAGAAATAC
TGATCCATACAAGTCCCCTATTGGAGTGCATACTTATCCACCTCTCAAGG
ATGAAGTGTACACTCCAATGCTCGGACCTCATAGCGGATTTCGACATGAA
TCAGCTTCGTTGCAGATGGGTCGAAAATGGTCGACTTATCATGAAACAAA
GCATTGGGTTGACCAATCGATTGTACATGGGATGCCATGGGTCGTTGCTG
CCGATGAGATTGGAGCGGATTCGCCGGGCATGCCGGGCGGTATTCCGCCT
GCCAGCATGGGCACGCCAAATATCAGCTTCCGTGCTGTGTTTTGCTGGGG
TAACATTATGGCCGGCGGTGCTGGGGTTGAAGTTTTTTCCGGCGCGGTTG
ACCAATCTCTCTCTAACTTCAGAGAATTTGACTCTGTCTGGGCAGAATTT
TCGCGCCCTATTCGGCTGTTTGAGCAGCACAATATTCCGTACTGGGCTAT
GCATGCAGACCCTGGCGTTGTCACGCCCAAGAAAATGCTGAACGACGATC
AATGGCTGTACGGGTTTGCCAAACGAGATGACGTATACGTGGTATACCAA
AGTGGTGAAATTGAACCTTTGCTCAATCTTTCGGGAGTTGGCGGCAAATT
CCACGTCAGATGGTTTAATCCTCGTCCGAGCTCCTCTACAAGTCTTGAGC
TCGGCAGTGTGTTGACAGTTGTTGGAGGCGCTGATAAGGTGGAATTAGGC
AAACCACCATTCGCAAGGCATCGCGATTGGGCTATTGTAGTGTCCCGGAC
CTTCCCTCTGAGCAATATTGCCACAAAGGTGAGCTCTGTATCGCCACACG
ACCTTATACCGGATAGTTTAACGTTCGGTACCAACGCGTCGCATTGGTGA

protein sequence of Gvermi877.t1

>Gvermi877.t1 ID=Gvermi877.t1|Name=Gvermi877.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=650bp
MWFSAFFVFFFIAFVKAAEVSPVEPARWELVSIDFEGPQTSEAATPNPFT
DYRLDVTFTHPASGVRHVVPGFYAADGNAAHTSAESGNIWRVRFTPERTG
TWSYVASFRKGDYIAVRDIDGVPESIDGDGGSFVVSARDFQAPDLRAKGR
LQYVGQRYYRYANGEYKLKLGTNTPENVLAYEEFDGEQTPLTFKSHRKDW
NSGDPTWGDDGRGKGMIGAVNYLSSMGVNSLFAITMTVKGDSKGQVHPWR
SRADRIRYDVSKLEQWEIVFDHAERKGISLNLAFCETENEALFEHEAGIS
TSNGFALSRKVYYRELIARFSHHLGFATIIGEENGWSEKEHNGGGFPWGV
ANTDQQRKKFSRFIRNTDPYKSPIGVHTYPPLKDEVYTPMLGPHSGFRHE
SASLQMGRKWSTYHETKHWVDQSIVHGMPWVVAADEIGADSPGMPGGIPP
ASMGTPNISFRAVFCWGNIMAGGAGVEVFSGAVDQSLSNFREFDSVWAEF
SRPIRLFEQHNIPYWAMHADPGVVTPKKMLNDDQWLYGFAKRDDVYVVYQ
SGEIEPLLNLSGVGGKFHVRWFNPRPSSSTSLELGSVLTVVGGADKVELG
KPPFARHRDWAIVVSRTFPLSNIATKVSSVSPHDLIPDSLTFGTNASHW*

mRNA from alignment at ScGOVlb_2952:777910..779859+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi877.t1 ID=Gvermi877.t1|Name=Gvermi877.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1950bp|location=Sequence derived from alignment at ScGOVlb_2952:777910..779859+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGTTTTCGGCATTTTTCGTTTTCTTCTTCATTGCATTTGTAAAGGC
TGCTGAGGTCTCTCCGGTGGAACCTGCGCGATGGGAGCTCGTTTCGATAG
ACTTTGAAGGGCCGCAAACCAGCGAAGCGGCTACGCCCAACCCTTTCACT
GATTATCGCCTGGATGTCACTTTCACTCACCCCGCTTCTGGCGTGAGACA
TGTTGTGCCGGGCTTCTATGCTGCGGATGGAAATGCCGCTCATACTTCGG
CTGAAAGCGGGAATATCTGGCGTGTGCGTTTTACTCCGGAACGGACTGGC
ACTTGGTCTTATGTCGCTTCTTTTCGGAAAGGTGACTACATAGCCGTCAG
GGATATTGATGGGGTGCCGGAATCTATTGACGGAGACGGTGGAAGTTTTG
TGGTAAGCGCGCGCGACTTTCAAGCACCAGACTTGCGAGCGAAGGGGAGA
CTTCAGTACGTCGGCCAGAGATACTATCGCTACGCCAACGGGGAATACAA
ATTGAAACTTGGCACGAACACGCCTGAAAATGTGCTCGCTTACGAGGAGT
TCGATGGAGAGCAGACACCACTCACGTTTAAATCGCATCGGAAGGATTGG
AACAGTGGGGACCCCACATGGGGTGATGATGGCCGTGGCAAGGGAATGAT
TGGCGCTGTCAACTACCTTTCCAGCATGGGCGTCAATTCTCTGTTTGCTA
TTACAATGACTGTAAAGGGCGACAGCAAGGGGCAGGTTCATCCGTGGCGT
TCTCGGGCCGACCGGATTCGATACGACGTTAGCAAGCTAGAGCAATGGGA
AATTGTCTTTGACCATGCTGAACGAAAGGGAATCTCTCTCAACCTGGCTT
TTTGTGAAACAGAAAACGAGGCCCTTTTCGAACATGAGGCTGGAATTTCA
ACGTCAAACGGATTCGCCTTATCGAGAAAAGTGTACTACAGAGAGCTCAT
AGCCCGTTTCTCGCACCATCTTGGGTTTGCTACAATAATCGGCGAGGAGA
ACGGGTGGTCAGAGAAGGAGCACAATGGTGGAGGTTTCCCCTGGGGAGTG
GCCAACACTGACCAGCAGCGAAAGAAATTCTCTCGGTTTATCAGAAATAC
TGATCCATACAAGTCCCCTATTGGAGTGCATACTTATCCACCTCTCAAGG
ATGAAGTGTACACTCCAATGCTCGGACCTCATAGCGGATTTCGACATGAA
TCAGCTTCGTTGCAGATGGGTCGAAAATGGTCGACTTATCATGAAACAAA
GCATTGGGTTGACCAATCGATTGTACATGGGATGCCATGGGTCGTTGCTG
CCGATGAGATTGGAGCGGATTCGCCGGGCATGCCGGGCGGTATTCCGCCT
GCCAGCATGGGCACGCCAAATATCAGCTTCCGTGCTGTGTTTTGCTGGGG
TAACATTATGGCCGGCGGTGCTGGGGTTGAAGTTTTTTCCGGCGCGGTTG
ACCAATCTCTCTCTAACTTCAGAGAATTTGACTCTGTCTGGGCAGAATTT
TCGCGCCCTATTCGGCTGTTTGAGCAGCACAATATTCCGTACTGGGCTAT
GCATGCAGACCCTGGCGTTGTCACGCCCAAGAAAATGCTGAACGACGATC
AATGGCTGTACGGGTTTGCCAAACGAGATGACGTATACGTGGTATACCAA
AGTGGTGAAATTGAACCTTTGCTCAATCTTTCGGGAGTTGGCGGCAAATT
CCACGTCAGATGGTTTAATCCTCGTCCGAGCTCCTCTACAAGTCTTGAGC
TCGGCAGTGTGTTGACAGTTGTTGGAGGCGCTGATAAGGTGGAATTAGGC
AAACCACCATTCGCAAGGCATCGCGATTGGGCTATTGTAGTGTCCCGGAC
CTTCCCTCTGAGCAATATTGCCACAAAGGTGAGCTCTGTATCGCCACACG
ACCTTATACCGGATAGTTTAACGTTCGGTACCAACGCGTCGCATTGGTGA

Coding sequence (CDS) from alignment at ScGOVlb_2952:777910..779859+

>Gvermi877.t1 ID=Gvermi877.t1|Name=Gvermi877.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1950bp|location=Sequence derived from alignment at ScGOVlb_2952:777910..779859+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGTTTTCGGCATTTTTCGTTTTCTTCTTCATTGCATTTGTAAAGGC
TGCTGAGGTCTCTCCGGTGGAACCTGCGCGATGGGAGCTCGTTTCGATAG
ACTTTGAAGGGCCGCAAACCAGCGAAGCGGCTACGCCCAACCCTTTCACT
GATTATCGCCTGGATGTCACTTTCACTCACCCCGCTTCTGGCGTGAGACA
TGTTGTGCCGGGCTTCTATGCTGCGGATGGAAATGCCGCTCATACTTCGG
CTGAAAGCGGGAATATCTGGCGTGTGCGTTTTACTCCGGAACGGACTGGC
ACTTGGTCTTATGTCGCTTCTTTTCGGAAAGGTGACTACATAGCCGTCAG
GGATATTGATGGGGTGCCGGAATCTATTGACGGAGACGGTGGAAGTTTTG
TGGTAAGCGCGCGCGACTTTCAAGCACCAGACTTGCGAGCGAAGGGGAGA
CTTCAGTACGTCGGCCAGAGATACTATCGCTACGCCAACGGGGAATACAA
ATTGAAACTTGGCACGAACACGCCTGAAAATGTGCTCGCTTACGAGGAGT
TCGATGGAGAGCAGACACCACTCACGTTTAAATCGCATCGGAAGGATTGG
AACAGTGGGGACCCCACATGGGGTGATGATGGCCGTGGCAAGGGAATGAT
TGGCGCTGTCAACTACCTTTCCAGCATGGGCGTCAATTCTCTGTTTGCTA
TTACAATGACTGTAAAGGGCGACAGCAAGGGGCAGGTTCATCCGTGGCGT
TCTCGGGCCGACCGGATTCGATACGACGTTAGCAAGCTAGAGCAATGGGA
AATTGTCTTTGACCATGCTGAACGAAAGGGAATCTCTCTCAACCTGGCTT
TTTGTGAAACAGAAAACGAGGCCCTTTTCGAACATGAGGCTGGAATTTCA
ACGTCAAACGGATTCGCCTTATCGAGAAAAGTGTACTACAGAGAGCTCAT
AGCCCGTTTCTCGCACCATCTTGGGTTTGCTACAATAATCGGCGAGGAGA
ACGGGTGGTCAGAGAAGGAGCACAATGGTGGAGGTTTCCCCTGGGGAGTG
GCCAACACTGACCAGCAGCGAAAGAAATTCTCTCGGTTTATCAGAAATAC
TGATCCATACAAGTCCCCTATTGGAGTGCATACTTATCCACCTCTCAAGG
ATGAAGTGTACACTCCAATGCTCGGACCTCATAGCGGATTTCGACATGAA
TCAGCTTCGTTGCAGATGGGTCGAAAATGGTCGACTTATCATGAAACAAA
GCATTGGGTTGACCAATCGATTGTACATGGGATGCCATGGGTCGTTGCTG
CCGATGAGATTGGAGCGGATTCGCCGGGCATGCCGGGCGGTATTCCGCCT
GCCAGCATGGGCACGCCAAATATCAGCTTCCGTGCTGTGTTTTGCTGGGG
TAACATTATGGCCGGCGGTGCTGGGGTTGAAGTTTTTTCCGGCGCGGTTG
ACCAATCTCTCTCTAACTTCAGAGAATTTGACTCTGTCTGGGCAGAATTT
TCGCGCCCTATTCGGCTGTTTGAGCAGCACAATATTCCGTACTGGGCTAT
GCATGCAGACCCTGGCGTTGTCACGCCCAAGAAAATGCTGAACGACGATC
AATGGCTGTACGGGTTTGCCAAACGAGATGACGTATACGTGGTATACCAA
AGTGGTGAAATTGAACCTTTGCTCAATCTTTCGGGAGTTGGCGGCAAATT
CCACGTCAGATGGTTTAATCCTCGTCCGAGCTCCTCTACAAGTCTTGAGC
TCGGCAGTGTGTTGACAGTTGTTGGAGGCGCTGATAAGGTGGAATTAGGC
AAACCACCATTCGCAAGGCATCGCGATTGGGCTATTGTAGTGTCCCGGAC
CTTCCCTCTGAGCAATATTGCCACAAAGGTGAGCTCTGTATCGCCACACG
ACCTTATACCGGATAGTTTAACGTTCGGTACCAACGCGTCGCATTGGTGA