Gvermi766.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi766.t1
Unique Name	Gvermi766.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	625

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_2952	contig	ScGOVlb_2952:16879..18753 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX50556
Preferred name	GSTCD
PFAMs	Methyltransf_31,Methyltransf_32
Max annot lvl	2759\|Eukaryota
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013
Evalue	2.27e-37
EggNOG OGs	COG0500@1\|root,2QUFE@2759\|Eukaryota
Description	Methyltransferase domain
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi766	Gvermi766	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_2952 16879..18753 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi766.t1.start1	Gvermi766.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_2952 16879..16881 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi766.t1.CDS1	Gvermi766.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_2952 16879..18753 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi766.t1.exon1	Gvermi766.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_2952 16879..18753 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi766.t1.stop1	Gvermi766.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_2952 18751..18753 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi766.t1	Gvermi766.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_2952 16879..18753 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_2952:16879..18753+
coding sequence from alignment at ScGOVlb_2952:16879..18753+

mRNA sequence

>Gvermi766.t1 ID=Gvermi766.t1|Name=Gvermi766.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=625bp
MEHNYATAQPSVKPMDRRIVQLPHRVNGLDLKTAEQVTRRVLLDDSARPV
YNLLPPTPSHRPELSSFLQYSGFSSLPPSVDPASRAPSEGPVPRYGVPPA
RADNKRAQIRYLISVLSVIVDAHPVKNPTIVDLCGGCGHLALVIAVLFPH
SLVHIVDENKTALSIAAVRAKKADLTNVRTHHVSVQNLSLSFDIALALHA
CAGASDAAISAAVRSEAALLIVPCCVGALVTSRGSTTGAAIARLQPVMDF
CGRSEIEWHIPRSKMFKGLVKEGEYDYLAKAADFSEHGVDDWRKVSKALL
EWDRLHWLQAEHYKTKLMKLRPVTCTPKNDVLVAWPEKKAYHFRDWPLDE
ITNGFVRDVVEGSVLNGLGIIEVREVERILRSLVCDENSDGIYRSAIGAG
KRRRKVFHAVAESMGLWHQSDGRGTQRTVVVSRSPHWPFFYDSYVGLGGP
MVESICAEFVNKVPVKLVERRVLVRGQPHHMTIVSPVEVKEIGSRYRENR
DACLKFISQRLMDTSMLVLGLGRVQCASMQHSLVAWDEPRVEMTKEHPQF
TFSDQTAYYVVIQWPAAQQVRRELGLPQKDLHITLGFNDKDIHNRRKDAN
TLVCRKEREYTLGSQGVRHLKSCE*

spliced messenger RNA

>Gvermi766.t1 ID=Gvermi766.t1|Name=Gvermi766.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1875bp|location=Sequence derived from alignment at ScGOVlb_2952:16879..18753+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCACAATTATGCAACTGCGCAGCCCTCCGTGAAGCCAATGGACAG
GCGCATAGTTCAGCTTCCACATCGTGTTAACGGCCTTGACTTAAAGACAG
CTGAGCAAGTTACCCGACGCGTGCTCCTGGACGATTCCGCTCGCCCTGTT
TACAACCTTTTACCTCCCACACCATCCCATCGCCCTGAATTGTCTTCTTT
TTTGCAATACTCTGGGTTTTCCTCCTTACCTCCATCAGTAGATCCTGCAT
CACGAGCCCCTTCGGAAGGACCGGTCCCAAGGTATGGAGTTCCACCGGCA
CGTGCAGATAACAAACGTGCACAGATTCGATATCTTATATCCGTTCTTTC
AGTCATTGTCGATGCTCATCCCGTAAAAAACCCCACGATTGTTGATCTTT
GTGGCGGTTGCGGTCACCTTGCGCTAGTTATTGCTGTGCTCTTCCCACAC
TCTTTGGTACACATTGTCGACGAAAACAAAACTGCACTTTCCATCGCCGC
AGTCCGCGCCAAGAAAGCGGACTTGACAAATGTGCGAACACATCATGTTT
CCGTCCAAAACCTATCTCTCTCGTTTGACATTGCTCTGGCTTTGCACGCT
TGCGCTGGCGCCTCGGACGCCGCTATATCCGCCGCTGTTCGCTCAGAAGC
TGCTCTTTTGATCGTTCCATGTTGCGTCGGTGCGTTGGTCACATCTCGCG
GTTCCACGACTGGAGCCGCCATTGCCCGCCTACAGCCTGTGATGGACTTT
TGTGGTCGTTCTGAGATAGAATGGCATATACCGCGAAGCAAAATGTTCAA
GGGACTGGTGAAAGAGGGCGAGTACGACTATCTCGCAAAAGCGGCGGACT
TCAGCGAACACGGGGTAGACGATTGGCGAAAGGTTTCTAAGGCTTTGCTT
GAATGGGACCGCCTACACTGGCTTCAAGCGGAGCACTACAAGACAAAGTT
AATGAAGTTGAGACCTGTGACATGCACTCCGAAGAACGACGTTTTGGTTG
CGTGGCCCGAAAAGAAAGCTTATCATTTCCGAGATTGGCCACTTGATGAG
ATTACAAATGGGTTCGTCCGCGACGTTGTAGAAGGAAGTGTGCTTAATGG
ACTAGGGATTATTGAGGTAAGGGAAGTGGAACGAATACTGAGATCATTAG
TCTGTGATGAAAACTCTGACGGAATATACAGATCAGCGATTGGTGCAGGT
AAGAGAAGAAGAAAGGTGTTTCATGCTGTTGCGGAATCTATGGGCCTATG
GCATCAGAGCGATGGGCGAGGAACACAACGCACTGTAGTTGTATCAAGAA
GTCCGCATTGGCCTTTTTTCTATGACTCCTACGTTGGACTCGGAGGTCCT
ATGGTAGAATCAATTTGTGCCGAATTTGTGAACAAAGTGCCCGTGAAACT
AGTAGAGCGTCGGGTTCTTGTTCGAGGCCAACCTCATCATATGACTATAG
TTTCACCCGTTGAGGTCAAAGAGATTGGTTCAAGATACAGGGAAAATCGA
GATGCATGCCTCAAATTCATTTCTCAACGTTTGATGGACACCTCAATGCT
AGTACTTGGGCTTGGACGTGTTCAGTGCGCTTCGATGCAACACAGTTTGG
TAGCATGGGATGAACCTCGCGTAGAAATGACCAAAGAACACCCCCAGTTT
ACCTTTTCCGATCAAACAGCATATTATGTTGTAATTCAGTGGCCTGCTGC
CCAACAGGTAAGAAGGGAACTGGGCTTGCCTCAGAAGGATCTTCACATTA
CATTAGGTTTCAATGACAAAGACATTCATAACCGCCGAAAAGATGCCAAC
ACTTTAGTGTGTCGAAAAGAACGAGAATATACTCTGGGTTCACAAGGTGT
CCGACACCTGAAATCTTGTGAATAA

protein sequence of Gvermi766.t1

>Gvermi766.t1 ID=Gvermi766.t1|Name=Gvermi766.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=625bp
MEHNYATAQPSVKPMDRRIVQLPHRVNGLDLKTAEQVTRRVLLDDSARPV
YNLLPPTPSHRPELSSFLQYSGFSSLPPSVDPASRAPSEGPVPRYGVPPA
RADNKRAQIRYLISVLSVIVDAHPVKNPTIVDLCGGCGHLALVIAVLFPH
SLVHIVDENKTALSIAAVRAKKADLTNVRTHHVSVQNLSLSFDIALALHA
CAGASDAAISAAVRSEAALLIVPCCVGALVTSRGSTTGAAIARLQPVMDF
CGRSEIEWHIPRSKMFKGLVKEGEYDYLAKAADFSEHGVDDWRKVSKALL
EWDRLHWLQAEHYKTKLMKLRPVTCTPKNDVLVAWPEKKAYHFRDWPLDE
ITNGFVRDVVEGSVLNGLGIIEVREVERILRSLVCDENSDGIYRSAIGAG
KRRRKVFHAVAESMGLWHQSDGRGTQRTVVVSRSPHWPFFYDSYVGLGGP
MVESICAEFVNKVPVKLVERRVLVRGQPHHMTIVSPVEVKEIGSRYRENR
DACLKFISQRLMDTSMLVLGLGRVQCASMQHSLVAWDEPRVEMTKEHPQF
TFSDQTAYYVVIQWPAAQQVRRELGLPQKDLHITLGFNDKDIHNRRKDAN
TLVCRKEREYTLGSQGVRHLKSCE*

mRNA from alignment at ScGOVlb_2952:16879..18753+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi766.t1 ID=Gvermi766.t1|Name=Gvermi766.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1875bp|location=Sequence derived from alignment at ScGOVlb_2952:16879..18753+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGCACAATTATGCAACTGCGCAGCCCTCCGTGAAGCCAATGGACAG
GCGCATAGTTCAGCTTCCACATCGTGTTAACGGCCTTGACTTAAAGACAG
CTGAGCAAGTTACCCGACGCGTGCTCCTGGACGATTCCGCTCGCCCTGTT
TACAACCTTTTACCTCCCACACCATCCCATCGCCCTGAATTGTCTTCTTT
TTTGCAATACTCTGGGTTTTCCTCCTTACCTCCATCAGTAGATCCTGCAT
CACGAGCCCCTTCGGAAGGACCGGTCCCAAGGTATGGAGTTCCACCGGCA
CGTGCAGATAACAAACGTGCACAGATTCGATATCTTATATCCGTTCTTTC
AGTCATTGTCGATGCTCATCCCGTAAAAAACCCCACGATTGTTGATCTTT
GTGGCGGTTGCGGTCACCTTGCGCTAGTTATTGCTGTGCTCTTCCCACAC
TCTTTGGTACACATTGTCGACGAAAACAAAACTGCACTTTCCATCGCCGC
AGTCCGCGCCAAGAAAGCGGACTTGACAAATGTGCGAACACATCATGTTT
CCGTCCAAAACCTATCTCTCTCGTTTGACATTGCTCTGGCTTTGCACGCT
TGCGCTGGCGCCTCGGACGCCGCTATATCCGCCGCTGTTCGCTCAGAAGC
TGCTCTTTTGATCGTTCCATGTTGCGTCGGTGCGTTGGTCACATCTCGCG
GTTCCACGACTGGAGCCGCCATTGCCCGCCTACAGCCTGTGATGGACTTT
TGTGGTCGTTCTGAGATAGAATGGCATATACCGCGAAGCAAAATGTTCAA
GGGACTGGTGAAAGAGGGCGAGTACGACTATCTCGCAAAAGCGGCGGACT
TCAGCGAACACGGGGTAGACGATTGGCGAAAGGTTTCTAAGGCTTTGCTT
GAATGGGACCGCCTACACTGGCTTCAAGCGGAGCACTACAAGACAAAGTT
AATGAAGTTGAGACCTGTGACATGCACTCCGAAGAACGACGTTTTGGTTG
CGTGGCCCGAAAAGAAAGCTTATCATTTCCGAGATTGGCCACTTGATGAG
ATTACAAATGGGTTCGTCCGCGACGTTGTAGAAGGAAGTGTGCTTAATGG
ACTAGGGATTATTGAGGTAAGGGAAGTGGAACGAATACTGAGATCATTAG
TCTGTGATGAAAACTCTGACGGAATATACAGATCAGCGATTGGTGCAGGT
AAGAGAAGAAGAAAGGTGTTTCATGCTGTTGCGGAATCTATGGGCCTATG
GCATCAGAGCGATGGGCGAGGAACACAACGCACTGTAGTTGTATCAAGAA
GTCCGCATTGGCCTTTTTTCTATGACTCCTACGTTGGACTCGGAGGTCCT
ATGGTAGAATCAATTTGTGCCGAATTTGTGAACAAAGTGCCCGTGAAACT
AGTAGAGCGTCGGGTTCTTGTTCGAGGCCAACCTCATCATATGACTATAG
TTTCACCCGTTGAGGTCAAAGAGATTGGTTCAAGATACAGGGAAAATCGA
GATGCATGCCTCAAATTCATTTCTCAACGTTTGATGGACACCTCAATGCT
AGTACTTGGGCTTGGACGTGTTCAGTGCGCTTCGATGCAACACAGTTTGG
TAGCATGGGATGAACCTCGCGTAGAAATGACCAAAGAACACCCCCAGTTT
ACCTTTTCCGATCAAACAGCATATTATGTTGTAATTCAGTGGCCTGCTGC
CCAACAGGTAAGAAGGGAACTGGGCTTGCCTCAGAAGGATCTTCACATTA
CATTAGGTTTCAATGACAAAGACATTCATAACCGCCGAAAAGATGCCAAC
ACTTTAGTGTGTCGAAAAGAACGAGAATATACTCTGGGTTCACAAGGTGT
CCGACACCTGAAATCTTGTGAATAA

Coding sequence (CDS) from alignment at ScGOVlb_2952:16879..18753+

>Gvermi766.t1 ID=Gvermi766.t1|Name=Gvermi766.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1875bp|location=Sequence derived from alignment at ScGOVlb_2952:16879..18753+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGCACAATTATGCAACTGCGCAGCCCTCCGTGAAGCCAATGGACAG
GCGCATAGTTCAGCTTCCACATCGTGTTAACGGCCTTGACTTAAAGACAG
CTGAGCAAGTTACCCGACGCGTGCTCCTGGACGATTCCGCTCGCCCTGTT
TACAACCTTTTACCTCCCACACCATCCCATCGCCCTGAATTGTCTTCTTT
TTTGCAATACTCTGGGTTTTCCTCCTTACCTCCATCAGTAGATCCTGCAT
CACGAGCCCCTTCGGAAGGACCGGTCCCAAGGTATGGAGTTCCACCGGCA
CGTGCAGATAACAAACGTGCACAGATTCGATATCTTATATCCGTTCTTTC
AGTCATTGTCGATGCTCATCCCGTAAAAAACCCCACGATTGTTGATCTTT
GTGGCGGTTGCGGTCACCTTGCGCTAGTTATTGCTGTGCTCTTCCCACAC
TCTTTGGTACACATTGTCGACGAAAACAAAACTGCACTTTCCATCGCCGC
AGTCCGCGCCAAGAAAGCGGACTTGACAAATGTGCGAACACATCATGTTT
CCGTCCAAAACCTATCTCTCTCGTTTGACATTGCTCTGGCTTTGCACGCT
TGCGCTGGCGCCTCGGACGCCGCTATATCCGCCGCTGTTCGCTCAGAAGC
TGCTCTTTTGATCGTTCCATGTTGCGTCGGTGCGTTGGTCACATCTCGCG
GTTCCACGACTGGAGCCGCCATTGCCCGCCTACAGCCTGTGATGGACTTT
TGTGGTCGTTCTGAGATAGAATGGCATATACCGCGAAGCAAAATGTTCAA
GGGACTGGTGAAAGAGGGCGAGTACGACTATCTCGCAAAAGCGGCGGACT
TCAGCGAACACGGGGTAGACGATTGGCGAAAGGTTTCTAAGGCTTTGCTT
GAATGGGACCGCCTACACTGGCTTCAAGCGGAGCACTACAAGACAAAGTT
AATGAAGTTGAGACCTGTGACATGCACTCCGAAGAACGACGTTTTGGTTG
CGTGGCCCGAAAAGAAAGCTTATCATTTCCGAGATTGGCCACTTGATGAG
ATTACAAATGGGTTCGTCCGCGACGTTGTAGAAGGAAGTGTGCTTAATGG
ACTAGGGATTATTGAGGTAAGGGAAGTGGAACGAATACTGAGATCATTAG
TCTGTGATGAAAACTCTGACGGAATATACAGATCAGCGATTGGTGCAGGT
AAGAGAAGAAGAAAGGTGTTTCATGCTGTTGCGGAATCTATGGGCCTATG
GCATCAGAGCGATGGGCGAGGAACACAACGCACTGTAGTTGTATCAAGAA
GTCCGCATTGGCCTTTTTTCTATGACTCCTACGTTGGACTCGGAGGTCCT
ATGGTAGAATCAATTTGTGCCGAATTTGTGAACAAAGTGCCCGTGAAACT
AGTAGAGCGTCGGGTTCTTGTTCGAGGCCAACCTCATCATATGACTATAG
TTTCACCCGTTGAGGTCAAAGAGATTGGTTCAAGATACAGGGAAAATCGA
GATGCATGCCTCAAATTCATTTCTCAACGTTTGATGGACACCTCAATGCT
AGTACTTGGGCTTGGACGTGTTCAGTGCGCTTCGATGCAACACAGTTTGG
TAGCATGGGATGAACCTCGCGTAGAAATGACCAAAGAACACCCCCAGTTT
ACCTTTTCCGATCAAACAGCATATTATGTTGTAATTCAGTGGCCTGCTGC
CCAACAGGTAAGAAGGGAACTGGGCTTGCCTCAGAAGGATCTTCACATTA
CATTAGGTTTCAATGACAAAGACATTCATAACCGCCGAAAAGATGCCAAC
ACTTTAGTGTGTCGAAAAGAACGAGAATATACTCTGGGTTCACAAGGTGT
CCGACACCTGAAATCTTGTGAATAA